prot_P-littoralis_Contig636.11.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig636.11.1
Unique Nameprot_P-littoralis_Contig636.11.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length246
Homology
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BLAST of mRNA_P-littoralis_Contig636.11.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.180e-8
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 0 
Query:   33 GAGAIFNCGGNAVYYQPDL--PKVYTAGMAYACERCGRHGHNATYCAAPKRFEG 84
            G G I++CG NAVY+QP+   P        + C RCGRHGH+A  CAAP+RFEG
Sbjct:  233 GVGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig636.11.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV09_9PHAE1.180e-853.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 85..101
e-value: 0.12
score: 17.0
coord: 62..78
e-value: 2.1
score: 9.3
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 86..99
score: 9.026372
NoneNo IPR availableGENE3D4.10.60.10coord: 59..107
e-value: 2.1E-7
score: 32.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 136..226
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 163..178
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILY57756Retrovirus zinc finger-like domainscoord: 60..101

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig636contigP-littoralis_Contig636:26369..27106 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig636.11.1mRNA_P-littoralis_Contig636.11.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig636 26369..27106 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig636.11.1 ID=prot_P-littoralis_Contig636.11.1|Name=mRNA_P-littoralis_Contig636.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
FPQNQRQRCQQQQQQPTPRACSQQSPQVKSQVGAGAIFNCGGNAVYYQPD
LPKVYTAGMAYACERCGRHGHNATYCAAPKRFEGHCWTCGEYGHTSRFCA
VKRGHGVLLSRRVTAVHGARNTDDDGREYVAAVSTGPQSALPPAAGMTDV
YEQPVESEVDAGIGSSGEEDDDASSDDGDDGWNSCVLRQQQLLRQRGGVV
ESMDPSERGFGGLGGGDGDPNAGTFSQLMHPFDRGKSSHLRRFVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR036875Znf_CCHC_sf