mRNA_P-littoralis_Contig636.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig636.11.1
Unique NamemRNA_P-littoralis_Contig636.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig636.11.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.180e-8
Identity = 29/54 (53.70%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   97 GAGAIFNCGGNAVYYQPDL--PKVYTAGMAYACERCGRHGHNATYCAAPKRFEG 252
            G G I++CG NAVY+QP+   P        + C RCGRHGH+A  CAAP+RFEG
Sbjct:  233 GVGGIYDCGSNAVYHQPESLPPPGAPMSTVHRCCRCGRHGHHAIDCAAPRRFEG 286
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig636.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JV09_9PHAE1.180e-853.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig636contigP-littoralis_Contig636:26369..27106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size739
Hectar predicted targeting categoryother localisation
Exons1
Cds size738
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791325.6186485-CDS-P-littoralis_Contig636:26368..271061680791325.6186485-CDS-P-littoralis_Contig636:26368..27106Pylaiella littoralis U1_48CDSP-littoralis_Contig636 26369..27106 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig636.11.1prot_P-littoralis_Contig636.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig636 26369..27106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig636.11.1

>prot_P-littoralis_Contig636.11.1 ID=prot_P-littoralis_Contig636.11.1|Name=mRNA_P-littoralis_Contig636.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=246bp
FPQNQRQRCQQQQQQPTPRACSQQSPQVKSQVGAGAIFNCGGNAVYYQPD
LPKVYTAGMAYACERCGRHGHNATYCAAPKRFEGHCWTCGEYGHTSRFCA
VKRGHGVLLSRRVTAVHGARNTDDDGREYVAAVSTGPQSALPPAAGMTDV
YEQPVESEVDAGIGSSGEEDDDASSDDGDDGWNSCVLRQQQLLRQRGGVV
ESMDPSERGFGGLGGGDGDPNAGTFSQLMHPFDRGKSSHLRRFVW*
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mRNA from alignment at P-littoralis_Contig636:26369..27106+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig636.11.1 ID=mRNA_P-littoralis_Contig636.11.1|Name=mRNA_P-littoralis_Contig636.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig636:26369..27106+ (Pylaiella littoralis U1_48)
TTCCCCCAGAATCAGCGGCAGCGGTGTCAGCAGCAGCAACAGCAGCCCAC
ACCCCGCGCCTGCTCACAGCAATCCCCCCAGGTAAAGTCGCAGGTTGGGG
CCGGGGCAATTTTTAATTGCGGGGGGAATGCGGTGTACTACCAGCCGGAT
TTGCCGAAGGTGTACACAGCAGGCATGGCGTATGCGTGTGAGCGGTGCGG
CAGGCACGGGCATAACGCCACATATTGCGCTGCACCGAAACGGTTCGAGG
GGCATTGCTGGACGTGCGGTGAGTACGGCCACACGTCTCGCTTTTGTGCC
GTCAAGCGAGGGCATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGTGCA
CGGTGCGAGAAACACTGACGACGACGGGCGAGAGTACGTTGCGGCCGTCT
CGACAGGCCCTCAGAGTGCGTTACCCCCTGCGGCAGGAATGACAGATGTG
TATGAGCAACCAGTTGAGTCGGAGGTGGATGCAGGGATCGGCAGCAGTGG
CGAAGAGGATGATGATGCTAGTAGTGATGATGGCGATGACGGTTGGAACA
GCTGTGTTTTGCGGCAGCAGCAGTTACTGCGGCAACGCGGCGGCGTGGTG
GAGTCCATGGACCCATCGGAGAGAGGGTTTGGCGGTTTAGGGGGCGGCGA
CGGGGACCCCAATGCTGGGACGTTTTCGCAGCTCATGCACCCGTTTGATC
GGGGCAAGAGTTCGCATTTGCGGCGGTTTGTATGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig636:26369..27106+

>mRNA_P-littoralis_Contig636.11.1 ID=mRNA_P-littoralis_Contig636.11.1|Name=mRNA_P-littoralis_Contig636.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=738bp|location=Sequence derived from alignment at P-littoralis_Contig636:26369..27106+ (Pylaiella littoralis U1_48)
TTCCCCCAGAATCAGCGGCAGCGGTGTCAGCAGCAGCAACAGCAGCCCAC
ACCCCGCGCCTGCTCACAGCAATCCCCCCAGGTAAAGTCGCAGGTTGGGG
CCGGGGCAATTTTTAATTGCGGGGGGAATGCGGTGTACTACCAGCCGGAT
TTGCCGAAGGTGTACACAGCAGGCATGGCGTATGCGTGTGAGCGGTGCGG
CAGGCACGGGCATAACGCCACATATTGCGCTGCACCGAAACGGTTCGAGG
GGCATTGCTGGACGTGCGGTGAGTACGGCCACACGTCTCGCTTTTGTGCC
GTCAAGCGAGGGCATGGGGTTCTGCTCTCCCGCCGTGTCACTGCTGTGCA
CGGTGCGAGAAACACTGACGACGACGGGCGAGAGTACGTTGCGGCCGTCT
CGACAGGCCCTCAGAGTGCGTTACCCCCTGCGGCAGGAATGACAGATGTG
TATGAGCAACCAGTTGAGTCGGAGGTGGATGCAGGGATCGGCAGCAGTGG
CGAAGAGGATGATGATGCTAGTAGTGATGATGGCGATGACGGTTGGAACA
GCTGTGTTTTGCGGCAGCAGCAGTTACTGCGGCAACGCGGCGGCGTGGTG
GAGTCCATGGACCCATCGGAGAGAGGGTTTGGCGGTTTAGGGGGCGGCGA
CGGGGACCCCAATGCTGGGACGTTTTCGCAGCTCATGCACCCGTTTGATC
GGGGCAAGAGTTCGCATTTGCGGCGGTTTGTATGGTGA
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