mRNA_P-littoralis_Contig634.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI) HSP 1 Score: 247 bits (630), Expect = 9.300e-81 Identity = 122/151 (80.79%), Postives = 139/151 (92.05%), Query Frame = 1
Query: 226 MEGVDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS-GGAANNSATHELRETLQEFEVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSRIYS 675
MEGVDDEENANLLQFGPEHAK+ MSCLSNAEV+++LEKQR NYEEKDINVTP+F+KTM+YVKRFG GG+ +AT ELRE LQ+FE FH+GE+IRLHQFEIMQVANLMQADSEVEEVLALIPS+GARLTEED++N+L IVRKHQ SR+YS
Sbjct: 1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A835YSR6_9STRA (HRDC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR6_9STRA) HSP 1 Score: 104 bits (260), Expect = 6.240e-25 Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 1
Query: 247 ENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGSGGAANNSATHELRETLQEFEVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSR 666
EN N L+FGP E++ CL++ EV IL + D+ T ++ KT+ +VKRFG+ ++ T ELR+ L+ FE D LH +EI+ + NLMQADS V+E +ALIPS+ + EEDI+ +L I+RK +R
Sbjct: 10 ENVNTLKFGP--GFEEIQCLTHTEVYQIL-----TSKTHDVQRTQAYTKTIEHVKRFGTADDEKHAITTELRQALETFERDTDQGTETLHSYEIVSLCNLMQADSTVDEAIALIPSLSRKFKEEDIEALLDIIRKANAAR 142
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 2.130e-22 Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 235 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEAI--RLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 651
V D E+A L G + E +CLSNAEVA+ILEKQ+ +YE ++ +T F KT +YV+RF AN ++ ELRE L F+ DGE + RL +FEI ++NL EVEE +ALIPS+ R E++I+ +LGIV +
Sbjct: 8 VVDTEDAAELNLGGDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSR 148
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM) HSP 1 Score: 97.4 bits (241), Expect = 5.930e-22 Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 235 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEAI--RLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 651
V D E+A L G + E +CLSNAEVA+ILEKQ+ +YE ++ +T F KT +YV+RF AN ++ ELRE L F+ +GE + RL +FEI ++NL EVEE +ALIPS+ R E++I+ +LGIV +
Sbjct: 8 VVDTEDAAELNLGDDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSR 148
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL) HSP 1 Score: 95.5 bits (236), Expect = 3.260e-21 Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 1
Query: 235 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEA--IRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 651
V D E+A L G + E +CLSNAEVA+ILEKQ+ +YE ++ +T F KT +YV+RF +N ++ ELRE L F+ DG+ +RL +FEI ++NL EVEE +AL+PS+ R E++I+ +LGIV +
Sbjct: 8 VIDTEDAAELNLGDDFRHE--TCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNLNP--EEVEESVALVPSLQKRFAEDEIEEILGIVSR 148
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 5.360e-21 Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 1
Query: 241 DEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQEFEVFHDGE-------AIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSRIYS 675
D E+A L G + +E +CLSNAEVA+ILEKQ+ +YE + +T F KT +YV+RF AN ++ ELRE L +E + +RL +FEI ++NL E EE +ALIPS+ + TEEDID +L I+ + +R+Y+
Sbjct: 13 DTEDAAELNLGEDFQQE--TCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNLNP--EEPEEAMALIPSLNKKFTEEDIDEILQIIAR-TTARMYA 161
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 9.070e-21 Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 1
Query: 235 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQEF----EVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSRIY 672
V D E+A L G + E +CLSNAEVA+ILEKQ+ +YE ++ +T F KT +YV+RF +N ++ ELRE L E+ IRL +FEI ++NL EVEE ++LIPS+ R EE+I+ +LGIV + + +R+Y
Sbjct: 8 VVDTEDAAELNLGEDFRDE--TCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNP--EEVEEAVSLIPSLSKRYAEEEIEEILGIVSR-KAARMY 154
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA) HSP 1 Score: 96.7 bits (239), Expect = 7.720e-20 Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 1
Query: 235 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEAI--RLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIV 645
V D E+A L G + E +CLSNAEVA+ILEKQ+ +YE ++ +T F KT +YV+RF AN ++ ELRE L F+ +GE + RL +FEI ++NL EVEE +ALIPS+ R E++I+ +LGIV
Sbjct: 8 VVDTEDAAELNLGDDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGEKVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIV 146
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A8J5JCD5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCD5_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.010e-19 Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 1
Query: 298 SCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQEFEVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 651
+CLSNAEVA+IL+KQ+ NY E+ T F KT +YV RF AN +A ELR+ LQ HD E +L +FEI ++NL EVEE +ALIPS+ T+ +I+ +L ++ +
Sbjct: 19 TCLSNAEVAIILDKQKVNYIEQKKMFTSMFKKTQSYVTRFTGTKDPVANQAAVIELRDALQSLSFEHDDEVHQLEEFEIASLSNLYP--EEVEEAVALIPSLPKHFTDHEIEEMLSLISR 136
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A2D4BKN8_PYTIN (DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKN8_PYTIN) HSP 1 Score: 97.1 bits (240), Expect = 1.600e-19 Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 1
Query: 181 LRRSRRTTAARGPVAMEGVDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEA--IRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 651
+ R RT G V D E+A L G + E +CLSNAEVA+ILEKQ+ +YE ++ +T F KT +YV+RF AN ++ ELRE L F DG+ +RL +FEI ++NL EVEE +ALIPS+ R E++I+ +LGIV +
Sbjct: 387 VHRCGRTGRQGGGSRGHHVVDTEDAAELNLGDDFRHE--TCLSNAEVAVILEKQKSDYETQEKQLTGVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFPREEDGQKTEVRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSR 545 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig634.1.1 >prot_P-littoralis_Contig634.1.1 ID=prot_P-littoralis_Contig634.1.1|Name=mRNA_P-littoralis_Contig634.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=226bp LPSLGVGCGSTIAHAHLQQSGACPLFVLARLCCDTAVLQLRKIPSCEYRGback to top mRNA from alignment at P-littoralis_Contig634:5768..8254+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig634.1.1 ID=mRNA_P-littoralis_Contig634.1.1|Name=mRNA_P-littoralis_Contig634.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2487bp|location=Sequence derived from alignment at P-littoralis_Contig634:5768..8254+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig634:5768..8254+ >mRNA_P-littoralis_Contig634.1.1 ID=mRNA_P-littoralis_Contig634.1.1|Name=mRNA_P-littoralis_Contig634.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=678bp|location=Sequence derived from alignment at P-littoralis_Contig634:5768..8254+ (Pylaiella littoralis U1_48)back to top |