prot_P-littoralis_Contig634.1.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig634.1.1
Unique Nameprot_P-littoralis_Contig634.1.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length226
Homology
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: D7FT81_ECTSI (RPOL4c domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT81_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 9.300e-81
Identity = 122/151 (80.79%), Postives = 139/151 (92.05%), Query Frame = 0
Query:   76 MEGVDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS-GGAANNSATHELRETLQEFEVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSRIYS 225
            MEGVDDEENANLLQFGPEHAK+ MSCLSNAEV+++LEKQR NYEEKDINVTP+F+KTM+YVKRFG  GG+   +AT ELRE LQ+FE FH+GE+IRLHQFEIMQVANLMQADSEVEEVLALIPS+GARLTEED++N+L IVRKHQ SR+YS
Sbjct:    1 MEGVDDEENANLLQFGPEHAKDDMSCLSNAEVSVVLEKQRINYEEKDINVTPAFSKTMSYVKRFGGLGGSVKMTATSELREALQQFETFHEGESIRLHQFEIMQVANLMQADSEVEEVLALIPSLGARLTEEDLENILAIVRKHQHSRLYS 151          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A835YSR6_9STRA (HRDC-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR6_9STRA)

HSP 1 Score: 104 bits (260), Expect = 6.240e-25
Identity = 58/140 (41.43%), Postives = 85/140 (60.71%), Query Frame = 0
Query:   83 ENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGSGGAANNSATHELRETLQEFEVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSR 222
            EN N L+FGP    E++ CL++ EV  IL       +  D+  T ++ KT+ +VKRFG+     ++ T ELR+ L+ FE   D     LH +EI+ + NLMQADS V+E +ALIPS+  +  EEDI+ +L I+RK   +R
Sbjct:   10 ENVNTLKFGP--GFEEIQCLTHTEVYQIL-----TSKTHDVQRTQAYTKTIEHVKRFGTADDEKHAITTELRQALETFERDTDQGTETLHSYEIVSLCNLMQADSTVDEAIALIPSLSRKFKEEDIEALLDIIRKANAAR 142          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A3M6VV57_9STRA (RPOL4c domain-containing protein n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A3M6VV57_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 2.130e-22
Identity = 64/145 (44.14%), Postives = 89/145 (61.38%), Query Frame = 0
Query:   79 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEAI--RLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 217
            V D E+A  L  G +   E  +CLSNAEVA+ILEKQ+ +YE ++  +T  F KT +YV+RF       AN ++  ELRE L    F+   DGE +  RL +FEI  ++NL     EVEE +ALIPS+  R  E++I+ +LGIV +
Sbjct:    8 VVDTEDAAELNLGGDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEDGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: H3GHD4_PHYRM (RPOL4c domain-containing protein n=23 Tax=Oomycota TaxID=4762 RepID=H3GHD4_PHYRM)

HSP 1 Score: 97.4 bits (241), Expect = 5.930e-22
Identity = 63/145 (43.45%), Postives = 89/145 (61.38%), Query Frame = 0
Query:   79 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEAI--RLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 217
            V D E+A  L  G +   E  +CLSNAEVA+ILEKQ+ +YE ++  +T  F KT +YV+RF       AN ++  ELRE L    F+   +GE +  RL +FEI  ++NL     EVEE +ALIPS+  R  E++I+ +LGIV +
Sbjct:    8 VVDTEDAAELNLGDDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGETVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A8K1FR52_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FR52_PYTOL)

HSP 1 Score: 95.5 bits (236), Expect = 3.260e-21
Identity = 61/145 (42.07%), Postives = 89/145 (61.38%), Query Frame = 0
Query:   79 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEA--IRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 217
            V D E+A  L  G +   E  +CLSNAEVA+ILEKQ+ +YE ++  +T  F KT +YV+RF       +N ++  ELRE L    F+   DG+   +RL +FEI  ++NL     EVEE +AL+PS+  R  E++I+ +LGIV +
Sbjct:    8 VIDTEDAAELNLGDDFRHE--TCLSNAEVAVILEKQKSDYENQEKQLTGVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLAFQREEDGQVTEVRLEEFEIACLSNLNP--EEVEESVALVPSLQKRFAEDEIEEILGIVSR 148          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A024TL56_9STRA (RPOL4c domain-containing protein n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TL56_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 5.360e-21
Identity = 62/154 (40.26%), Postives = 90/154 (58.44%), Query Frame = 0
Query:   81 DEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQEFEVFHDGE-------AIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSRIYS 225
            D E+A  L  G +  +E  +CLSNAEVA+ILEKQ+ +YE  +  +T  F KT +YV+RF       AN ++  ELRE L  +E   +          +RL +FEI  ++NL     E EE +ALIPS+  + TEEDID +L I+ +   +R+Y+
Sbjct:   13 DTEDAAELNLGEDFQQE--TCLSNAEVAVILEKQKSDYESSEKPLTSVFQKTYSYVQRFSGTKDPVANQASVTELREALITYEFTRESPDDPSQAIEVRLEEFEIACLSNLNP--EEPEEAMALIPSLNKKFTEEDIDEILQIIAR-TTARMYA 161          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: F0W0U0_9STRA (Uncharacterized protein AlNc14C5G725 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W0U0_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 9.070e-21
Identity = 63/152 (41.45%), Postives = 91/152 (59.87%), Query Frame = 0
Query:   79 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQEF----EVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRKHQQSRIY 224
            V D E+A  L  G +   E  +CLSNAEVA+ILEKQ+ +YE ++  +T  F KT +YV+RF       +N ++  ELRE L       E+      IRL +FEI  ++NL     EVEE ++LIPS+  R  EE+I+ +LGIV + + +R+Y
Sbjct:    8 VVDTEDAAELNLGEDFRDE--TCLSNAEVAVILEKQKQDYENQEKQLTNVFQKTYSYVQRFSGTKDPVSNQASVTELREALMSLVFNREIDERVVEIRLEEFEISCLSNLNP--EEVEEAVSLIPSLSKRYAEEEIEEILGIVSR-KAARMY 154          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A3F2S3S1_9STRA (Helicase C-terminal domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S1_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 7.720e-20
Identity = 63/143 (44.06%), Postives = 88/143 (61.54%), Query Frame = 0
Query:   79 VDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEAI--RLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIV 215
            V D E+A  L  G +   E  +CLSNAEVA+ILEKQ+ +YE ++  +T  F KT +YV+RF       AN ++  ELRE L    F+   +GE +  RL +FEI  ++NL     EVEE +ALIPS+  R  E++I+ +LGIV
Sbjct:    8 VVDTEDAAELNLGDDFRNE--TCLSNAEVAVILEKQKSDYETQEKQLTNVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFQREEEGEKVEYRLEEFEIACLSNLNP--EEVEEAVALIPSLHKRFAEDEIEEILGIV 146          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A8J5JCD5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JCD5_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 1.010e-19
Identity = 52/120 (43.33%), Postives = 73/120 (60.83%), Query Frame = 0
Query:  100 SCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQEFEVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 217
            +CLSNAEVA+IL+KQ+ NY E+    T  F KT +YV RF       AN +A  ELR+ LQ     HD E  +L +FEI  ++NL     EVEE +ALIPS+    T+ +I+ +L ++ +
Sbjct:   19 TCLSNAEVAIILDKQKVNYIEQKKMFTSMFKKTQSYVTRFTGTKDPVANQAAVIELRDALQSLSFEHDDEVHQLEEFEIASLSNLYP--EEVEEAVALIPSLPKHFTDHEIEEMLSLISR 136          
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Match: A0A2D4BKN8_PYTIN (DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BKN8_PYTIN)

HSP 1 Score: 97.1 bits (240), Expect = 1.600e-19
Identity = 67/163 (41.10%), Postives = 93/163 (57.06%), Query Frame = 0
Query:   61 LRRSRRTTAARGPVAMEGVDDEENANLLQFGPEHAKEQMSCLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGS--GGAANNSATHELRETLQE--FEVFHDGEA--IRLHQFEIMQVANLMQADSEVEEVLALIPSMGARLTEEDIDNVLGIVRK 217
            + R  RT    G      V D E+A  L  G +   E  +CLSNAEVA+ILEKQ+ +YE ++  +T  F KT +YV+RF       AN ++  ELRE L    F    DG+   +RL +FEI  ++NL     EVEE +ALIPS+  R  E++I+ +LGIV +
Sbjct:  387 VHRCGRTGRQGGGSRGHHVVDTEDAAELNLGDDFRHE--TCLSNAEVAVILEKQKSDYETQEKQLTGVFQKTYSYVQRFSGTKDPVANQASVTELREALMSLAFPREEDGQKTEVRLEEFEIACLSNLNP--EEVEEAVALIPSLQKRFAEDEIEEILGIVSR 545          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig634.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT81_ECTSI9.300e-8180.79RPOL4c domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835YSR6_9STRA6.240e-2541.43HRDC-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
A0A3M6VV57_9STRA2.130e-2244.14RPOL4c domain-containing protein n=3 Tax=Peronospo... [more]
H3GHD4_PHYRM5.930e-2243.45RPOL4c domain-containing protein n=23 Tax=Oomycota... [more]
A0A8K1FR52_PYTOL3.260e-2142.07Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A024TL56_9STRA5.360e-2140.26RPOL4c domain-containing protein n=7 Tax=Aphanomyc... [more]
F0W0U0_9STRA9.070e-2141.45Uncharacterized protein AlNc14C5G725 n=1 Tax=Albug... [more]
A0A3F2S3S1_9STRA7.720e-2044.06Helicase C-terminal domain-containing protein n=1 ... [more]
A0A8J5JCD5_9STRA1.010e-1943.33Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
A0A2D4BKN8_PYTIN1.600e-1941.10DEAD/DEAH box RNA helicase, putative n=1 Tax=Pythi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006590RNA polymerase Rpb4/RPC9, coreSMARTSM00657rpol4neu2coord: 92..222
e-value: 2.0E-5
score: 30.8
IPR038324Rpb4/RPC9 superfamilyGENE3D1.20.1250.40coord: 78..221
e-value: 1.6E-28
score: 101.1
IPR005574RNA polymerase subunit Rpb4/RPC9PFAMPF03874RNA_pol_Rpb4coord: 101..218
e-value: 3.9E-10
score: 40.1
NoneNo IPR availablePANTHERPTHR21297:SF0DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4coord: 78..219
IPR045222DNA-directed RNA polymerase II subunit Rpb4-likePANTHERPTHR21297DNA-DIRECTED RNA POLYMERASE IIcoord: 78..219
IPR010997HRDC-like superfamilySUPERFAMILY47819HRDC-likecoord: 80..218

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig634contigP-littoralis_Contig634:5768..8254 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig634.1.1mRNA_P-littoralis_Contig634.1.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig634 5768..8254 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig634.1.1 ID=prot_P-littoralis_Contig634.1.1|Name=mRNA_P-littoralis_Contig634.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=226bp
LPSLGVGCGSTIAHAHLQQSGACPLFVLARLCCDTAVLQLRKIPSCEYRG
IPIEPQTTTLLRRSRRTTAARGPVAMEGVDDEENANLLQFGPEHAKEQMS
CLSNAEVAMILEKQRGNYEEKDINVTPSFAKTMTYVKRFGSGGAANNSAT
HELRETLQEFEVFHDGEAIRLHQFEIMQVANLMQADSEVEEVLALIPSMG
ARLTEEDIDNVLGIVRKHQQSRIYS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006590RNA_pol_Rpb4/RPC9_core
IPR038324Rpb4/RPC9_sf
IPR005574Rpb4/RPC9
IPR045222Rpb4-like
IPR010997HRDC-like_sf