mRNA_P-littoralis_Contig631.55.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig631.55.1
Unique NamemRNA_P-littoralis_Contig631.55.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5L481_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L481_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 3.300e-67
Identity = 105/176 (59.66%), Postives = 141/176 (80.11%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKQDFNPSWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLHAQTPGTVD 528
            +N+DE LPLPL Y++YVKT+  L L + +  T KQ ++ +Q+VCIVY+CLAVKRNAG++  E+K AAAA+GY EIAVPGFFRWARDNDI  P+ LT++++G ++  GAP+L+ +G KLW++FD AM  MK+  NP WDRY+KGQ G N LPSGQTGDDAI+NLLDGL+++T G+ +
Sbjct:    3 INVDEVLPLPLVYNDYVKTSINLALENKKLFTLKQQMLFIQNVCIVYSCLAVKRNAGVVGTEAKRAAAAQGYREIAVPGFFRWARDNDITFPSELTMKRIGATSTDGAPVLYTNGKKLWTKFDAAMLKMKKFCNPIWDRYVKGQPGGN-LPSGQTGDDAINNLLDGLYSKTKGSAE 177          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5JUY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUY9_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 3.660e-49
Identity = 82/142 (57.75%), Postives = 106/142 (74.65%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKQDFNPSWDRYI 423
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E MG ++L GAP+LF DG KLW RFD  MR MK+ +N  WDR +
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNGAPVLFTDGKKLWKRFDKVMREMKKTYNKVWDRCV 144          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: D7FPI6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI6_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 1.030e-44
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 1
Query:   25 LPLEYSEYVKTAAKLVLLDNED--ITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMRVMKQDFNPSWDRYIKGQLGKNTLPSGQTGDDAIDNLLDGLH 504
            LPLE++ Y +T   + L D     +T  +LL H+Q+VCIVYACL VKRNAGI+  ++K AAAAKGY++IAV GFF+W ++N          WLT E MG ++++G  +LF  G KLW RFD  MR +K+ +NP WD +++GQ G + LPSG   +DAI+ LL+G++
Sbjct:   12 LPLEFNSYAETVISM-LRDRRSSGLTDAKLLKHLQNVCIVYACLTVKRNAGIVSTQAKHAAAAKGYKDIAVLGFFKWLKENLEADQYFSQPWLTFEVMGRTSMSGDAVLFTHGKKLWKRFDNIMRALKKFYNPVWDSFVEGQPG-DQLPSGSQDEDAIEYLLNGVY 175          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5KDP2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP2_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 4.990e-32
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVEKMGCSTLTG 321
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E MG ++L G
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5JZP4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZP4_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 3.890e-31
Identity = 62/108 (57.41%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLP-AWLTVEKMGCSTLTG 321
            M LD   PLPLE++ YV+   +L LL  + ++Q +LL H+Q+VCIVYACLAVKRNAGI+  E+K  AAAKGY++IAVPGFF+W ++N IV+  AWLT E MG ++L G
Sbjct:    4 MKLDNVQPLPLEFNGYVEGTLEL-LLGGKGLSQIKLLKHLQNVCIVYACLAVKRNAGIVSTEAKYKAAAKGYKDIAVPGFFKWLKENGIVIKQAWLTFEVMGRTSLNG 110          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5JPS0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS0_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 1.690e-29
Identity = 61/131 (46.56%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMR 381
            M LD    LPLE++ Y +T   ++   +  +T  +LL H+Q+  IVYACLAVKRNAGI+  ++K AAAA+GY++IAVP FF+W ++N    D  L  WLT E MG +++ G  +LF +G K+W RFD  +R
Sbjct:  400 MKLDGVQSLPLEFNSYAETVVSMLRDRSSGLTDAKLLKHLQNGRIVYACLAVKRNAGIVSTQAKHAAAAQGYKDIAVPSFFKWLQENLDKEDSFLQPWLTFEVMGKTSMKGGAVLFTNGEKMWKRFDKILR 530          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5K5X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5X3_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.540e-29
Identity = 61/131 (46.56%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTGAPILFKDGAKLWSRFDTAMR 381
            M LD    LPL+++ Y +    ++   +  +T  +LL H+Q+ CIVYACLAVKRNAGI+  +++ AAAA+GY++IAVPGF +  ++N    D  L  WLT E MG S++ G  +LF DG KLW RFD  +R
Sbjct:  228 MKLDGVQSLPLKFNSYAEAVISMLRDRSSGLTDAKLLKHLQNGCIVYACLAVKRNAGIVSTQARHAAAAQGYKDIAVPGFIKRLQENLDKEDFFLQPWLTCEVMGKSSMKGGAVLFTDGEKLWKRFDKILR 358          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5JXZ8_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ8_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 2.450e-27
Identity = 54/111 (48.65%), Postives = 76/111 (68.47%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTG 321
            M LD    LPLE++ Y +T   ++   +  +T  +LL H+Q+VCIVYACLAVKRNAGI+  ++K AAA +GY++IAVPGFF+W ++N    D  L  WLT E MG +++ G
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISMLRDRSSGLTDAKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAAPQGYKDIAVPGFFKWLQENLDKEDFFLQLWLTFEVMGKTSMKG 114          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5JJR6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR6_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 6.920e-25
Identity = 55/113 (48.67%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNED--ITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTG 321
            M LD    LPLE++ Y +T   + L D     +T  +LL H+Q+VCIVYACLAVKRNAGI+  ++K AA AKGY++IAVPGFF+W ++N          WLT E MG ++++G
Sbjct:    4 MKLDGVQSLPLEFNSYAETVISM-LRDKRSSGLTDTKLLKHLQNVCIVYACLAVKRNAGIVSTQAKHAAVAKGYKDIAVPGFFKWLKENLEADQYFSQPWLTFEVMGRTSMSG 115          
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Match: A0A6H5JF32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF32_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.680e-24
Identity = 51/111 (45.95%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACLAVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDN----DIVLPAWLTVEKMGCSTLTG 321
            M LD    LPL+++ Y +T   ++   +  +T  +LL  +Q+VCIVYACLAVKRNAG++  ++K A AA+GY++IAVPGFF+W ++N    D  L  WLT E MG +++ G
Sbjct:    4 MKLDGVQSLPLKFNSYAETVISMLRDRSSGLTDAKLLKPLQNVCIVYACLAVKRNAGMVFTQAKHATAAQGYKDIAVPGFFKWLQENLDKEDFFLQPWLTFEVMGKTSMKG 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig631.55.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A6H5L481_9PHAE3.300e-6759.66Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUY9_9PHAE3.660e-4957.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI6_ECTSI1.030e-4448.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDP2_9PHAE4.990e-3257.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZP4_9PHAE3.890e-3157.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPS0_9PHAE1.690e-2946.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5X3_9PHAE2.540e-2946.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXZ8_9PHAE2.450e-2748.65Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJR6_9PHAE6.920e-2548.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF32_9PHAE1.680e-2445.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig631contigP-littoralis_Contig631:169100..170758 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size529
Hectar predicted targeting categoryother localisation
Exons3
Cds size528
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791319.0264325-CDS-P-littoralis_Contig631:169099..1692111680791319.0264325-CDS-P-littoralis_Contig631:169099..169211Pylaiella littoralis U1_48CDSP-littoralis_Contig631 169100..169211 -
1680791319.0363266-CDS-P-littoralis_Contig631:169658..1697521680791319.0363266-CDS-P-littoralis_Contig631:169658..169752Pylaiella littoralis U1_48CDSP-littoralis_Contig631 169659..169752 -
1680791319.0465019-CDS-P-littoralis_Contig631:170436..1707581680791319.0465019-CDS-P-littoralis_Contig631:170436..170758Pylaiella littoralis U1_48CDSP-littoralis_Contig631 170437..170758 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig631.55.1prot_P-littoralis_Contig631.55.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig631 169100..170758 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig631.55.1

>prot_P-littoralis_Contig631.55.1 ID=prot_P-littoralis_Contig631.55.1|Name=mRNA_P-littoralis_Contig631.55.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=176bp
MNLDETLPLPLEYSEYVKTAAKLVLLDNEDITQKQLLIHMQSVCIVYACL
AVKRNAGILDKESKLAAAAKGYEEIAVPGFFRWARDNDIVLPAWLTVEKM
GCSTLTGAPILFKDGAKLWSRFDTAMRVMKQDFNPSWDRYIKGQLGKNTL
PSGQTGDDAIDNLLDGLHAQTPGTVD
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mRNA from alignment at P-littoralis_Contig631:169100..170758-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig631.55.1 ID=mRNA_P-littoralis_Contig631.55.1|Name=mRNA_P-littoralis_Contig631.55.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1659bp|location=Sequence derived from alignment at P-littoralis_Contig631:169100..170758- (Pylaiella littoralis U1_48)
ATGAATCTCGATGAGACGCTGCCACTTCCGCTGGAGTACTCGGAGTACGT GAAGACCGCCGCGAAGCTCGTCTTATTGGACAACGAGGACATAACACAGA AGCAGCTACTGATACACATGCAGAGCGTGTGTATAGTCTACGCGTGCCTG GCAGTGAAGCGGAACGCCGGCATATTGGATAAGGAAAGCAAACTCGCTGC TGCGGCGAAAGGATATGAGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGG CACGGGACAACGATATCGTGCTTCCTGCGTGGCTGACTGTGGAGAAGATG GGGTGCAGTACCCTGACCGGAGGTGAGAATGATGAGCCAGCGAGTACGTG CTAGAGACGAGGGGAGACGAGGGGGAAAGAAAGAGAGACGTGTGTGGGCG ACCCGCCTCGCAAATCCGGTCTGCCTACTGTCGCACTGCTGTCATTCTTT TGTTGTATATGTTATGCGCGAGTGTGAAAGGCACGCTTGTTGATTTAAAT CCTCTTGACACATGAGGCAGATGAGGTTTTATCATTTTTTTTACGTGCGG CGTAAAAGTAGCAGCAGCAGTACTGTAAGTACATGAGGGGCTTTCTATGC TGCACGGCAGTACGGTAGCTATTTCGCTTGTACCACAGCGTATACGCACT CTGTAGCTCTACTGTCTTCAAAACAGAACTAGCTCTTTCGCCTGTACAGC AGTATAGTAATGCTGTCCTGCAAAACAGCACATCAGTAACTGCTGCACGA GCGCGTACGTAGCTCTTGTGGAAGTGCAACCCATATGGCAATCTTTCTCG AGGGACCTGCCGGCGCGCACCGTGGACACGCCACAAGGTATCTAAAGCAT ACGTGCAGATTGCAGATGTTACTGGATTTCATCCCGATGTGCAGATTTGC TCGCTGCAGCTCGTACTGCTGCTGCTGTCAATCGCAGCATCGAAATAGTA TCGTAGCTTACGACTCTATGTACACTGCCCTGTTGTCTCTGTCTGCTGTG TCGCAGCCCCGATTCTCTTCAAGGACGGTGCCAAGCTGTGGAGTCGTTTC GACACGGCGATGCGTGTGATGAAGCAAGACTTCAACCCAAGCTGGGACAG GTACGTTGGACGCATGCGCGTTTTCATTGTTTTACCCTCGAACACCAATT TTAATTCGCGTTGCACGGTGTTGACTACACGCATATATCCGCGTAAAGAA TTTTCGTGTGTAGTAAGGCATCAGATTCGTCGCGACAATTGCCACGAAAT CGCAATATTGGCTGTGAAATTGGAACGAAACCCATGCTAGACTAGTGCAC CAAGCAGATAATCGACGTGTGAAACACAGCAGTTGTATCTTCATTTGGCT CAGTGTCTGTTACCCTGGAGAATAGCATAACAAAAAGGGATTCGGCACGA CACTTTGAAACGGCCCCGACCTAATGCCACACATAAAAAAAATGCTACCG TATAACTCGAGTGGATGAGATTACAAGCCTCCTTCACCTCCGTAGTCCGG GTGTCGGGAATCTTACAGTGAATATTGCATGTTTATCCCCCTCCCAGATA CATCAAGGGCCAGCTGGGGAAGAACACCCTGCCGTCGGGCCAAACTGGAG ACGACGCAATCGACAACCTGCTCGACGGGCTTCACGCCCAGACCCCTGGC ACCGTAGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig631:169100..170758-

>mRNA_P-littoralis_Contig631.55.1 ID=mRNA_P-littoralis_Contig631.55.1|Name=mRNA_P-littoralis_Contig631.55.1|organism=Pylaiella littoralis U1_48|type=CDS|length=528bp|location=Sequence derived from alignment at P-littoralis_Contig631:169100..170758- (Pylaiella littoralis U1_48)
ATGAATCTCGATGAGACGCTGCCACTTCCGCTGGAGTACTCGGAGTACGT
GAAGACCGCCGCGAAGCTCGTCTTATTGGACAACGAGGACATAACACAGA
AGCAGCTACTGATACACATGCAGAGCGTGTGTATAGTCTACGCGTGCCTG
GCAGTGAAGCGGAACGCCGGCATATTGGATAAGGAAAGCAAACTCGCTGC
TGCGGCGAAAGGATATGAGGAGATCGCCGTTCCAGGCTTCTTTAGGTGGG
CACGGGACAACGATATCGTGCTTCCTGCGTGGCTGACTGTGGAGAAGATG
GGGTGCAGTACCCTGACCGGAGCCCCGATTCTCTTCAAGGACGGTGCCAA
GCTGTGGAGTCGTTTCGACACGGCGATGCGTGTGATGAAGCAAGACTTCA
ACCCAAGCTGGGACAGATACATCAAGGGCCAGCTGGGGAAGAACACCCTG
CCGTCGGGCCAAACTGGAGACGACGCAATCGACAACCTGCTCGACGGGCT
TCACGCCCAGACCCCTGGCACCGTAGAC
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