mRNA_P-littoralis_Contig63.104.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig63.104.1
Unique NamemRNA_P-littoralis_Contig63.104.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig63.104.1 vs. uniprot
Match: D7FI22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI22_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 7.350e-23
Identity = 59/102 (57.84%), Postives = 73/102 (71.57%), Query Frame = 1 
Query:   64 SSLSNEEVEAVVAYVGMDEFGGVHAEEFRHVISAAKKGNIPDAHVADCVRRIDGMLRLRRLSIRDVFRKLNSDGSGKLSREELAQRVRELSGHDRARVIQRR 369
            SSL+ EEVEAV+ YV  D+ G V A +F+  ISAAK+G IPD  +A  +RRI+ MLRL  L IRDVF  ++SDGSGKLS  ELAQ +  L  HDR +VI+RR
Sbjct:  206 SSLTLEEVEAVIVYVDKDQSGEVDARDFQAAISAAKQGKIPDQGLAGSIRRINDMLRLHNLRIRDVFHVMDSDGSGKLSHRELAQGLSLLYEHDRDKVIERR 307
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BLAST of mRNA_P-littoralis_Contig63.104.1 vs. uniprot
Match: A0A6H5JFH1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFH1_9PHAE)

HSP 1 Score: 52.0 bits (123), Expect = 1.570e-6
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  196 VADCVRRIDGMLRLRRLSIRDVF------RKLNSDGSGKLSREELAQRVRELSGHDR 348
            +A C+RRI+ MLRL  L IRDVF      R  +SDGSGKLS  EL Q + +L  HDR
Sbjct:    1 MAGCIRRINDMLRLHNLRIRDVFHVMVRGRMPDSDGSGKLSHRELTQGLSQLYEHDR 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig63.104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI22_ECTSI7.350e-2357.84Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JFH1_9PHAE1.570e-654.39Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig63contigP-littoralis_Contig63:482113..484549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size396
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-10_003220.1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791315.0025537-CDS-P-littoralis_Contig63:482112..4822531680791315.0025537-CDS-P-littoralis_Contig63:482112..482253Pylaiella littoralis U1_48CDSP-littoralis_Contig63 482113..482253 +
1680791315.0132518-CDS-P-littoralis_Contig63:482829..4829611680791315.0132518-CDS-P-littoralis_Contig63:482829..482961Pylaiella littoralis U1_48CDSP-littoralis_Contig63 482830..482961 +
1680791315.0261831-CDS-P-littoralis_Contig63:483375..4834491680791315.0261831-CDS-P-littoralis_Contig63:483375..483449Pylaiella littoralis U1_48CDSP-littoralis_Contig63 483376..483449 +
1680791315.0356886-CDS-P-littoralis_Contig63:484500..4845491680791315.0356886-CDS-P-littoralis_Contig63:484500..484549Pylaiella littoralis U1_48CDSP-littoralis_Contig63 484501..484549 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig63.104.1prot_P-littoralis_Contig63.104.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig63 482113..484549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig63.104.1

>prot_P-littoralis_Contig63.104.1 ID=prot_P-littoralis_Contig63.104.1|Name=mRNA_P-littoralis_Contig63.104.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=132bp
GRGREAAAGASGGRRESDVAPSSLSNEEVEAVVAYVGMDEFGGVHAEEFR
HVISAAKKGNIPDAHVADCVRRIDGMLRLRRLSIRDVFRKLNSDGSGKLS
REELAQRVRELSGHDRARVIQRRKDERGRRRA
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mRNA from alignment at P-littoralis_Contig63:482113..484549+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig63.104.1 ID=mRNA_P-littoralis_Contig63.104.1|Name=mRNA_P-littoralis_Contig63.104.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2437bp|location=Sequence derived from alignment at P-littoralis_Contig63:482113..484549+ (Pylaiella littoralis U1_48)
GGAAGGGGAAGAGAAGCAGCCGCAGGGGCAAGCGGAGGACGCAGGGAGAG
TGACGTGGCGCCGTCTTCGCTCAGCAATGAGGAGGTTGAGGCAGTGGTCG
CGTACGTCGGCATGGATGAGTTCGGAGGGGTACACGCTGAGGTGGGCTTG
GGTTCGGGCTGAGCTTGGGTTTGGATGGTGTGGATGGGTTTCGATGGGTT
GCTGGGTTGTTGTTCGGAAAGATCGAGCTGTTTTGGGTCAGGCGGCGTGG
GGTTTAGGTGGGAGTGGGCTGGAGTTGGTGTTTTGTTTGTATGGGCTAGA
AAGGATACATAAATACATACATACATATATTCGAAACGGCCGGATGATCA
CTTGTTTGAAAAGTACTGAAGAAACCGAAAAAGCCAAGTCGTTCTTGGTG
CTGGTTGAGTACACACCAGTCCTCGCCCGCACGAGGCTTTGTGGGATCGA
GCTCGGTAAATACCGAGGACACAACCCGGTGATGTTGTCTCTTGTACGTA
CGCCACAGGGTAGTTTTGAAGCTTTCTGGAAAGGAAGCTTCGTTCCGGAG
GTTAAAATGACGCAGAGGCTTTGCGTTGTCCTCGGCCTCCTGGTAGACGT
TTATCCCGGTCCCTCCCGCCCGCCCGTCATTTCCATCTATCGGAGTTGGC
CGCCGCCGCCGTCGTCGCCGTCGCCGTCGTCTTTGTTGTCGTTGTTGTTG
TTCTTTCTTACGCGCAGGAGTTTCGGCATGTGATCAGTGCGGCAAAGAAG
GGAAACATCCCCGACGCCCACGTGGCCGACTGCGTACGAAGAATAGACGG
CATGTTGCGCCTGCGGCGCCTTAGCATCCGCGACGTCTTCCGCAAGCTGG
TGAGGAGGACAGTAACAACAACGAGAACAACACAACAACAACAATAACAG
CAACCAACACCGACAACAACAACGAAAAGGCCCTCACTCCCTTTAAAACT
GGATCCACATTCCAGCTAAACATCAATGCTTGAAAAGAGGCCCTCCTCAC
CCGTGAGCCGATTTTTTGGAGCTCGACGCCCTCCACAGCTCTTTTTTGGG
TACATTTTCTTTTTTTCTGCTTCTTTATTTCGTTTTCGTTTCCGCCCGGG
AGTTGTACTACCGTATTGCTTTTACTATTGTTCATAGGGTGTGCTGGTAT
GGTAGCTGGTACCGGGTACCAGGTATGTTTTTTGTAGGAGTTCACGACAT
CGTGCCAAAACGCACCCCACCCACCCACCCAACCACCCAACCACCCACCG
CCCCCTCGCGCAGAACTCCGACGGAAGCGGGAAGCTGTCTCGCGAAGAGC
TGGCCCAGAGGGTACGCGAGCTCTCCGGACATGACAGGTGTGGCATGGAA
GCGTCGTGTCCATCGTGTATGACAACAACATAGTTCGAAGTACGAAGTAT
TGTGTGTGAGAATCGTTCTACGCGAACAAAGTAAAAACTGGTTTGTGAAA
GGCATGAAAGTTCTGTATACTCGAAGACAAGTTTATTGCAAGCTCATGGG
ATTCACCACCTCATCACGCCAATGCCACACAAGACTAGTAATATAAAACG
ATTGTGGGTTACACTGCAGAAAACGGTTGCGGGAGCTCGGGAAGAGGGAG
GTATTTTCTGTGTGGTCACAGCCCTGCAGCGGAGCTACCGTGCCGTCCTA
GATCATTTCCTTCAGGGCTTTCACGCATGCGAAATATATATAAACATTTG
TGCTATGATACTTGCATATCATTTGTTTGGGGATGGTGGGGCCGTTTTTT
TTTTTCGATTCCTTATCTTGTTCGCTGGGTCGATGAGAATTGCAACCTCT
CGACTACGAGCTCGGCACTTAGCCCCTGACTCTTACTTTCATTTGATTTT
TGGTTGGACTACGAATGGGCACTTTTCCTTTGTTTCATCTTGGGGGGGGG
GGTCTGTTTCATTTTGTCGTAATTTCCACACGTAGTTAGGATTCCCCCGC
TTAAAGAATGCAGATGCCCTCTTTAGGTGGTAGCCTGTGACCGCGGAGAT
CGTCCGCTATCGGATGAGTGAGCAGCACGAACAATAGAAGGTACTGAGTA
GAGATCGGAATGGATAGACAGCACACACACCGTTACAGAGTACTTCGTGC
CCATCGATGATGGAAAGTGAACGTGTTTCCCGATCACACCCACCCACCCA
CCCACACACCCCTACCAACCAACAAACACCAACCAACCAACCTCTCATCC
AACCCACGCACACACTACACGACTACCGGTACATCATTCACAAAACGATA
TTCATAAACGATGCGATCCTGCTTGGACAATTACACCTCTTGCAGAGAAA
GAGCTTGTCAAAAATAATAGCAAAAAACACCACACCACCAGCAACATTGG
GACGAGCCGACAACGATGGACAATGATATCCCTGCCAGGGCGAGGGTCAT
CCAGCGGCGGAAGGACGAGAGGGGCAGGAGGAGGGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig63:482113..484549+

>mRNA_P-littoralis_Contig63.104.1 ID=mRNA_P-littoralis_Contig63.104.1|Name=mRNA_P-littoralis_Contig63.104.1|organism=Pylaiella littoralis U1_48|type=CDS|length=396bp|location=Sequence derived from alignment at P-littoralis_Contig63:482113..484549+ (Pylaiella littoralis U1_48)
GGAAGGGGAAGAGAAGCAGCCGCAGGGGCAAGCGGAGGACGCAGGGAGAG
TGACGTGGCGCCGTCTTCGCTCAGCAATGAGGAGGTTGAGGCAGTGGTCG
CGTACGTCGGCATGGATGAGTTCGGAGGGGTACACGCTGAGGAGTTTCGG
CATGTGATCAGTGCGGCAAAGAAGGGAAACATCCCCGACGCCCACGTGGC
CGACTGCGTACGAAGAATAGACGGCATGTTGCGCCTGCGGCGCCTTAGCA
TCCGCGACGTCTTCCGCAAGCTGAACTCCGACGGAAGCGGGAAGCTGTCT
CGCGAAGAGCTGGCCCAGAGGGTACGCGAGCTCTCCGGACATGACAGGGC
GAGGGTCATCCAGCGGCGGAAGGACGAGAGGGGCAGGAGGAGGGCC
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