mRNA_P-littoralis_Contig627.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig627.36.1
Unique NamemRNA_P-littoralis_Contig627.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: D8LBF3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBF3_ECTSI)

HSP 1 Score: 559 bits (1441), Expect = 2.170e-198
Identity = 315/366 (86.07%), Postives = 332/366 (90.71%), Query Frame = 1
Query:   13 NEAFMEDFGDLLNDGGDPYQVKNARNAAEALDTSLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLNDLAMIDEHKIKTLLDSNFKTFEEHQAVRRQEQSLADKFLGEEKAIQEQLXXXXXXXXXXXXXXXXXXEERRKAEEKG 1110
            N+AFMED+GD LND GDPY+ K  RNAAEALD SLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILD EFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEI KD RIEFWL LVKQNATPPTA+I VN +TARALAK+MWTNTSLTSLDLS NGIDDAAG YVA LLKRNTALVNVAL SNQLGVFACRAFGESLCSNSTLKCLSLESN LT  G ++SGI+AL +MF+ NSTLTSVNLWRCALGAEAG ALSRGMESNHTITFLEVGLN LAM D+HK+KT L++NFK FEE QAVRRQE S+ADK L EEKA+QEQL  XXXXXXXXXXXXXXX EERRKAEEKG
Sbjct:    4 NDAFMEDYGDSLNDAGDPYETKTTRNAAEALDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLNLVKQNATPPTARIDVNSVTARALAKSMWTNTSLTSLDLSRNGIDDAAGTYVARLLKRNTALVNVALGSNQLGVFACRAFGESLCSNSTLKCLSLESNSLTSDGANMSGIQALTDMFSKNSTLTSVNLWRCALGAEAGVALSRGMESNHTITFLEVGLNGLAMADQHKVKTALENNFKRFEECQAVRRQELSIADKILAEEKAMQEQLRAXXXXXXXXXXXXXXXAEERRKAEEKG 369          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: A0A835YIK2_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIK2_9STRA)

HSP 1 Score: 246 bits (628), Expect = 5.240e-75
Identity = 153/341 (44.87%), Postives = 195/341 (57.18%), Query Frame = 1
Query:   85 RNAAEALDTS-LQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLNDLAMIDEHKIKTLLDSNFKTFEEHQAVRRQEQSLADKFLGEEKAIQEQLXXXXXXXXXXXXXXXXXXEERRKAEE 1104
            ++  E  DTS LQAPNANDFSNARLIEELE R  R +GFRDQD++ LQK+LD EFE EKE +I+   EK+EQA K+AGLQR+R  LE+QL EE  E+ ++  +  WL+LVKQ+ TP TA+I+VN I+ARALAKAMWTNTSLTSLDL+ N +DD AGAY                                               PLT  GE  +G R + +  + N+ LTS+NLWRC LG  AG  L+ G+++N TITFLE+G N LA+ D  +I   +  N   ++  Q     +Q   D+ L EEK  Q+ L                  EERR  EE
Sbjct:   35 KSPGETFDTSQLQAPNANDFSNARLIEELEGRRMRPTGFRDQDIIALQKVLDAEFEQEKEHLIRQHNEKKEQAMKEAGLQRRRAQLEKQLTEEKQEVAQNKIVAGWLSLVKQDETPLTARIEVNSISARALAKAMWTNTSLTSLDLARNNLDDFAGAYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTNEGEKPAGFRYMVQALSKNAALTSLNLWRCGLGTPAGHDLAAGIQANRTITFLELGNNSLALSDLRQIGARVKDNRCHYDALQQQAMAKQREQDRILQEEKKAQDLLRKERELHDWLEAQRLLRAEERRAEEE 375          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: A0A6H5JI07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI07_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 6.240e-70
Identity = 120/133 (90.23%), Postives = 123/133 (92.48%), Query Frame = 1
Query:   13 NEAFMEDFGDLLNDGGDPYQVKNARNAAEALDTSLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLV 411
            N+AFMED+GD LND GDPY+ K  RNAAEALD SLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILD EFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEI KD RIEFWL LV
Sbjct:    4 NDAFMEDYGDSLNDAGDPYEPKTTRNAAEALDASLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDAEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIGKDQRIEFWLHLV 136          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: A0A7R9VZE3_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VZE3_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.450e-58
Identity = 120/293 (40.96%), Postives = 177/293 (60.41%), Query Frame = 1
Query:   16 EAFMEDFGDLLND-----GGDPYQVKNARNAAEALDTSLQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLN 879
            EA    F DLL D        P   ++ R+  E L   L A   N  +   L++ELE R  +  GF   D   LQ+  D E EL  E+  + +RE RE  AK+A  QR+R+++E ++REE  EI +D R++ WL L ++   PP ++I+VN I+AR+LAKA+ T++S+  LD+S  G+ D AGAY+   L+ N  L+ + L SN+ G   C++ G++L SN+ ++ +SLESNPLTG   DISGI A+AEM + N  L  ++LWRC  GA++G A++  M  N  +T +EVG N
Sbjct:   10 EALFSLFEDLLEDTSVSSSDQPLAGEDERDDDEPLVHKLDA---NALTLNELVQELEKRGLQARGFFADDAKVLQEKFDEEHELYVEAKRREKREAREADAKRAAEQRRRLLMETEVREEREEIGRDRRMKSWLLLTEEGMAPPHSRIEVNNISARSLAKALLTDSSILCLDVSNLGLSDLAGAYLCRALRSNRTLIKIELGSNKFGPKTCKSLGDALTSNNVVRFVSLESNPLTGEKNDISGIIAIAEMLSKNKALRYLSLWRCGTGADSGKAIADAMAFNDALTCIEVGYN 299          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: F0Y577_AURAN (F-box domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y577_AURAN)

HSP 1 Score: 168 bits (426), Expect = 1.320e-42
Identity = 114/311 (36.66%), Postives = 167/311 (53.70%), Query Frame = 1
Query:   16 EAFME---DFGDLLNDGGDPYQVKNARNAAEALDTS-LQAPNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLNDLAMIDEHKIKTLLDSNFK 936
            E F E   D GD+L D  D  +  N R   +++D + L+  +A       L+ E+E R+    GF + D   LQK  D E   E E I + +RE+R+++  +A LQ+KR+ LE+QLREE   +  D +IE WL++V+ + T P+A+I VN +TARALAKAMW N SLTSLDLS N + D AGA +  +LKR                                          T    D +G+ ALA+  ++N++LT +NLWRC LG  AGA L++ +  N +I  L+VG N + + D+ +I   +D+N K
Sbjct:    4 EDFTEEDLDAGDVLEDADDGDE--NGREREDSIDLADLKPMDAFLMKMEDLVTEMERRHLHPKGFFNDDAKELQKYFDQEHFKELEKIKEERREQRQRSXMKAQLQKKRLQLEKQLREEQDAVANDPQIEAWLSVVRSDQTRPSARIGVNSVTARALAKAMWNNKSLTSLDLSRNDLSDFAGAQIGRMLKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNESTDQTGVVALAQALSSNASLTLLNLWRCDLGTTAGAELAKALHLNSSIINLDVGNNGVLVADKRRIADKVDANKK 312          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: A0A7S3XPA2_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPA2_HETAK)

HSP 1 Score: 153 bits (387), Expect = 4.240e-39
Identity = 107/312 (34.29%), Postives = 153/312 (49.04%), Query Frame = 1
Query:   16 EAFMEDFGDLLNDGGDP-----YQVKNARNAAEALDTSLQAP-NANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGG-EDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLNDLAMIDEHKIKTLLDSN 930
            +A  ++F DLL+   DP          A    + +D     P +A   +N  L  ELE R  +  GF   D   LQK  D E E      +K + E++E+ A QAGL R++ ++E+QL+EE+  I +D R E WL LV+ +ATPP A++++  + AR LAKA+W N SL SLDLS NG+DD AGA+                                               PLT  G  + +G    A+M  +N+TLTS+NL+RC LG EAG  L  G+E N ++ FL+VG N      + +I   +  N
Sbjct:    7 DAVNKEFEDLLDHFADPDDEIDITAFGATGTTDLMDLQDSQPRDALRLTNDELNAELEMRGEKPKGFFTDDAKVLQKYFDVEHEEYLAKQMKERAEQQEKLAAQAGLIRRKRLVEKQLKEELLAIQRDRRAEHWLALVRGDATPPQARVELGSVAARCLAKALWGNGSLVSLDLSRNGLDDKAGAFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLTESGLAEKTGAPEFADMLKHNNTLTSLNLFRCHLGPEAGTELLGGLEQNASLVFLDVGGNHFLQSHDARINGKIQEN 318          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: A0A7S3ZT07_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT07_9STRA)

HSP 1 Score: 149 bits (377), Expect = 8.570e-38
Identity = 96/284 (33.80%), Postives = 147/284 (51.76%), Query Frame = 1
Query:  154 LIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLNDLAMIDEHKIKTLLDSNFKTFEEHQAVRRQEQSLADKFLGEE 1005
            L+ E E R     GF + D   LQK+LD EF    E +   +R   ++   +A LQ+KR+ LE+QLREE   I      + WL  +K N T    +I+ + I  RALAKA+W+++S+T LDLS NG+ D AGA +  +LKRN                                  ++E+NPLT    D +G+ ALA+   +N+TLT +N+WRC LG  AGAA++  + +N T+   +VG   +  +D  +I   +  N +   E +A  ++E++  D+   EE
Sbjct:   51 LVVEFERRGMHPKGFFNDDARELQKVLDKEFSENLEKLKAEKRAALQRNRMKAKLQKKRLQLEKQLREEQDAIHDSLDAKAWLNTIKNNQTRDACRIECDSIVCRALAKALWSSSSITCLDLSRNGLSDFAGAQLGRMLKRNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNMETNPLTNESTDQTGVVALAKALGSNTTLTRLNMWRCDLGTAAGAAIADALVANETLIDFDVGHGGILELDAQRIADRIAHNKR---ETKAKNKREKAYRDQLAREE 331          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: A0A8K1CCX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CCX8_PYTOL)

HSP 1 Score: 140 bits (354), Expect = 2.140e-34
Identity = 103/304 (33.88%), Postives = 156/304 (51.32%), Query Frame = 1
Query:  124 PNANDFSNARLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQAAKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLNDLAMIDEHKIKTLLDSN---FKTFEEHQ-AVRRQEQSLADKFLGEEKAIQEQ 1023
            P+A   +   +  E+ +R  +  GF + D   LQ+  + E   EKE+ +  + +   +   +  + R+RM  ER+LREE++EI +D R+E WL L K+N TP  A ++++ I  RAL K++  N SL SL LS N +DDAAG Y+A LLKRNT                                    SNPLT   +D+SGI ALA             LWR  LG + G  +++G+E N T+  ++VG N +A  D  +I T L  N   F  FE  Q AVR+ + + A++  G ++A+++Q
Sbjct:   46 PDAFALTQNEIRREMIDRGIQPKGFYNDDAARLQEEFNREHAAEKEARMTQKLQFAAKTYLKETVHRRRMERERELREEVAEIAQDPRLEVWLDLAKRNETPTHATLRLSSIGTRALGKSLVLNHSLQSLSLSRNALDDAAGKYLALLLKRNTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNPLTDDEKDMSGIAALANXXXXXXXXXXXXLWRTRLGTDGGKIIAQGVEKNTTLLCVDVGNNRIAAADGVRIDTQLKKNRRGFDAFEGKQIAVRQAQLTAAEQERGRQQALRKQ 349          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: B8C189_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C189_THAPS)

HSP 1 Score: 138 bits (347), Expect = 6.080e-34
Identity = 88/249 (35.34%), Postives = 136/249 (54.62%), Query Frame = 1
Query:  154 LIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQA-------AKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQVNPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLN 879
            ++ ELE +  +  GF   D   +Q+  D E E       ++ ++KR +A       AKQ   +RK  +LE+++ +E   I  D ++  W  L+   + P   +I +N I++RALAKA+W+N+ + SLD+S   + D AGAY++  L+ N  LV + L  N  G    R+  +SL  N TL+ LSLESNPL    +    I   +    +N+ LTS++LWRC LG EAG  LS  +  N ++  +EVG N
Sbjct:   91 ILTELERKGIQPIGFYSDDAKRVQRCFDQEHE-------EYVKDKRNEALAAKVYEAKQQAERRKAALLEQEIVDEKKAISNDLQLLSWFNLLSTQSCPRHCRIDINDISSRALAKALWSNSRIQSLDVSNMHLSDLAGAYLSRSLQNNICLVKLELGGNAFGSKTLRSLADSLFVNRTLQFLSLESNPLAKD-DTRECISLFSSALESNTRLTSLSLWRCGLGLEAGRMLSNSISKNSSLIIVEVGYN 331          
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Match: A0A7S1ZJ98_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZJ98_TRICV)

HSP 1 Score: 120 bits (301), Expect = 1.430e-29
Identity = 59/138 (42.75%), Postives = 96/138 (69.57%), Query Frame = 1
Query:  457 ITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVALSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGG-GEDISGIRALAEMFANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLE 867
            ++ARALAKA+ T++++ SLD+S  G+ D AGA++   L++N +++ + L  N+LG   CR+ G++LC+N  L+ ++LESNPLTG   +D+SGI A+A M   N TL  ++LWRC +G E G  ++  + SN+ +T +E
Sbjct:    2 VSARALAKALLTDSAMVSLDVSHAGLSDLAGAFLCRALRKNRSMIKLELGGNRLGPKTCRSLGDALCTNDALQFVNLESNPLTGEKADDMSGIVAIAHMVRQNKTLRYLSLWRCDIGPEGGEIVADAVCSNNILTCIE 139          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig627.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D8LBF3_ECTSI2.170e-19886.07Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A835YIK2_9STRA5.240e-7544.87Leucine rich repeat protein n=1 Tax=Tribonema minu... [more]
A0A6H5JI07_9PHAE6.240e-7090.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9VZE3_9STRA1.450e-5840.96Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
F0Y577_AURAN1.320e-4236.66F-box domain-containing protein n=1 Tax=Aureococcu... [more]
A0A7S3XPA2_HETAK4.240e-3934.29Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S3ZT07_9STRA8.570e-3833.80Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8K1CCX8_PYTOL2.140e-3433.88Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
B8C189_THAPS6.080e-3435.34Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S1ZJ98_TRICV1.430e-2942.75Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig627contigP-littoralis_Contig627:148477..152626 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LBF3
PFAMsLRR_6
Model size1113
Max annot lvl2759|Eukaryota
KEGG koko:K17576
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.56e-199
EggNOG OGsKOG4308@1|root,KOG4308@2759|Eukaryota
Descriptioninterleukin-8 biosynthetic process
Cds size1113
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791308.3597806-CDS-P-littoralis_Contig627:148476..1491811680791308.3597806-CDS-P-littoralis_Contig627:148476..149181Pylaiella littoralis U1_48CDSP-littoralis_Contig627 148477..149181 -
1680791308.374329-CDS-P-littoralis_Contig627:151378..1516211680791308.374329-CDS-P-littoralis_Contig627:151378..151621Pylaiella littoralis U1_48CDSP-littoralis_Contig627 151379..151621 -
1680791308.385667-CDS-P-littoralis_Contig627:152461..1526261680791308.385667-CDS-P-littoralis_Contig627:152461..152626Pylaiella littoralis U1_48CDSP-littoralis_Contig627 152462..152626 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig627.36.1prot_P-littoralis_Contig627.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig627 148477..152626 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig627.36.1

>prot_P-littoralis_Contig627.36.1 ID=prot_P-littoralis_Contig627.36.1|Name=mRNA_P-littoralis_Contig627.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=371bp
MGDNNEAFMEDFGDLLNDGGDPYQVKNARNAAEALDTSLQAPNANDFSNA
RLIEELENRNSRVSGFRDQDVVTLQKILDTEFELEKESIIKHQREKREQA
AKQAGLQRKRMMLERQLREEISEIDKDHRIEFWLTLVKQNATPPTAQIQV
NPITARALAKAMWTNTSLTSLDLSCNGIDDAAGAYVAHLLKRNTALVNVA
LSSNQLGVFACRAFGESLCSNSTLKCLSLESNPLTGGGEDISGIRALAEM
FANNSTLTSVNLWRCALGAEAGAALSRGMESNHTITFLEVGLNDLAMIDE
HKIKTLLDSNFKTFEEHQAVRRQEQSLADKFLGEEKAIQEQLRAERQLRE
WLEDQKQLRAEERRKAEEKG*
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mRNA from alignment at P-littoralis_Contig627:148477..152626-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig627.36.1 ID=mRNA_P-littoralis_Contig627.36.1|Name=mRNA_P-littoralis_Contig627.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4150bp|location=Sequence derived from alignment at P-littoralis_Contig627:148477..152626- (Pylaiella littoralis U1_48)
ATGGGCGACAACAATGAAGCGTTCATGGAAGATTTTGGGGATTTATTAAA CGACGGGGGAGATCCATACCAGGTGAAAAACGCGCGGAATGCGGCGGAGG CGCTGGACACATCGCTCCAAGCCCCCAATGCCAACGACTTCTCAAACGCT CGGCTTATTGAGGAGGTGAGGGACTGTAATTTGGCACAACAATCGGAGCG TGCACAGAAAATATCTTGACCTTGTCTTCCCACAAACCACAAATGGTGAG CCCGTCATGGATTTTCGGGACACATTTATTTATTGAATTCCGGAGTATGT ACATACTTCGAAGTACTTGTATCAGGTTCACGACTGCATGTGTAGGGCAC AACAAGTATACGGTACAGTAGGCGACACATGTTAAGATACTGATATTTAA GAAATCCAGCCTGAGAATTACTTCGGAGTATCATCATAGAAATCGGTCAG AATAGACCCCAGCGCCGGAAGAAAGGGAATATTGTCCACACACACACCTC TCAACAAGGCCACATCAGGCGCTCTCTCAACCAAGCTGTCTTCCCCCTCC AAATAGGAACTCAAAAATGGCTTCTTTCCCCGCTGGAAGCATGTAAACAC CATGCGATGTGTATAAAAAACTGTCCATGGGCAACCGCCCAAGAAAACAA ATGTCGCCTTTGAGCCCCTTTGCAAAATACGAAGTACAGTTTGAAAAGAT CTTGATTCTTGCGAATCTCGCGATTTGCACCCCTCGACGAAAACAATTTG GGTTTAAGCATTTCTGCTCTTATCTGAGCGAAATTCAGCTGCAAGCAAGC CTCATTATCAGCCAAAAAAGGGGTTTCTTGACTGTAGAGTCTGGAATATG GTTTGGTGTATCTCCTCTGATTGCACATGTGTGTACAACGTTTACACTTC AAAGGATCTGCCCCAATCTATCATTCAACAGGGTACACAGCCGTATGTTG CCGATTTATTTTGCTATCCATGTCTGCCTGTTTTTTGCTTTTTTTTTATG TGTAGCTTGAGAATAGGAACTCGCGCGTCAGTGGGTTCCGAGATCAAGAC GTCGTGACTCTTCAGAAAATCTTAGACACAGAGTTCGAGCTGGAAAAGGA AAGCATCATCAAGCATCAGCGAGAGAAGAGAGAACAGGCCGCAAAGCAAG CGGGTCTGCAAAGGAAACGAATGATGCTGGAGAGACAACTGAGGGAGGAA ATATCGGAAATCGATAAAGACCACAGAATTGAATTCTGGCTGACATTGGT GGGTGCTGTAAGTACAGCGAGCCTGGAGTATGGATGGATGGATGGATGCT CTTTAATGTCTTCCATGGACTGAATAGCTCCCGACCTACGGTTGATGTGA CAGGCAGAGGTGGCAGTTTTGTATGCCCACACGTTTGTGAGAGCGTTTGA CTTTGGAATGAGCTCACGTGCGACCCATGGCAGGTAGCCCAGCCCTCTTG CAGGTAAATTATATTTTTACACTCTCCTTTCCTCAACAAACTGTTATATA GAACTCTCCTCTTCCCATGGGTAAGCATCGTTCGCAACACCCGCAATCGC TGCCGCTAATACCCGGTCATTCAGTTTGGAAACCTCGAAACCTTAACCTT CGAAGGGCGAAAGCAGATCATGAGGTCGAATCTCGGGTAAGTAAATGAAT TTCCTCACACCACCGCACATTCTCAGTAGAATGGAGAGGGATAATTTGGT CAGTAAACAAAGTGTTCAACTTCGAAGGTCGACGAGGGAAAGGGGTGGCC GAACCCTTCTCGTGGTATGGAATAAGACGAGCACCACCCAAAAGAACGGT GGAGATGGAAACAAAACTCCTGCTGTGTTGATCTTCCTCCCCTATCATAC AGTGTGCGACCTCGGCCGATGCGCGCAAACAAAACCAAGATAGGTGTAGG CTGACGTCTAGATAGAGCAGACGGGACGACAACACAGACATGCACGTCGC AGAAGGGGGTAGTACTAGAATATTTCTACATGCTGTAGACCTTCCTCCTG TGCTGTGACCCCGGCTCATGCACCCACATATACATGTACCGAGATGTTTA GATGGTTCAAGAATAGAGGTGAGATGACAACACACACACAGTGCTCTTGT TTTTCCTTTCGGCGAAGCGTTTCGACAACTAATTATCACTTTTTCAAATT CGAAGAAGAATACCCTGTGGAGGTGTCATTCATAAAGGTAACATCTCCAA CATCTTTCGAGGACGATTGCCTCTTTTCACTTTGGCGTCAATGGAGAGAT CGTCTCAACCACATTGAAACGATGGGTACCCCAACATAGCAAGACATTCC ACTATTTTTTTGACATACCACGCGTCATTTAATCATTTCTTCGACAACCT CTATCAAAAGATGGTGAAATAGAAAAATGAAGGGAAAAATGGTAGAAAGG ACCAAAGTGCAGATAGATACATATACAGTACCGGCCCGCTCATAAGAAAC ATCTTTATAAGAAAGCGAGGCGGGAATTTTTAAAAAATTAAGAAAATGGG CTCGGCAGCCGGCGCCACACTAAATCCTATACGATGGTTAAGAAATAGCC ATACTTAATGCTGGTGACACAACAAGAAGCCAAGGCTGAGGCTGATTTCC AGTTTCTTATGAGCGGGCCGGTACTGTATATGTATATGGATCGAACAGGT GAAACTTTGAAAGGCATGGCAGAAGTGGCGTACCCGCAGTAAAGCAAACA CAAGCAACAGAGTAATGTGAAGAAACGGATTTGACTGGCCGCCAGCCGGT CGGGTTCCGGTTACCCATAGAAGAGTTCTTCCTGCCTACCTGCCTGGTAT GATATATCAAGCAAGATGTAATGCGGAGGCCGGCCTTTACAAAAGCTTGC ACCTGCCCCAACTTCTGTCGAGGGAGATCCCCTCTTTCTAAATACCTGGT CGTTTCAAAGAGGCACGGTAGAACACCCCACCAGCCGCTTAAAACATGAA GCTGCTCCGTTCCTGCAGGCAGGGTGTTCCCCAATCAAATACGAAGGACA AGAGGTAATAGAGCGCAGTTCTTCATAATACTTCTATATGTTAAGTTAAC AACGCTGTTGACTCACATCTCAGTTTTGGTCAGCAGGGAGTACAATACCC CTTATCTTCCCAATTTATGTTGTTTTGTTCCTCAACCGAGCCACGTCTCA ATATGCAAGGCCTACAGTCATACCATTTCTGTGTCTGGTGGGCACAGACC TCCTTCGTTGTCAATCTTGCTTTATACAAACACATCAAAACATCGATTAA CGGTGAGCAACCAGTTACCGCCGTCGGTACATACTGATCATTGATCGTCA AACGAGGCAAAACGCTGATCTGCAGATGACCTCCCACCAAACACACCCAT TCGAGGGCAACTTGCTTCCCAACATTATCACCAACAGCTGCCGTTGGGTG AAATATATACACCTACCTGACGCGTGCCCTCTTCATTCTCCACAGGTCAA GCAAAATGCCACACCACCTACAGCTCAAATCCAAGTCAATCCGATCACGG CACGAGCCCTCGCCAAGGCGATGTGGACCAACACCTCGCTCACTAGCCTG GACTTATCGTGTAATGGGATCGACGATGCGGCGGGCGCATACGTGGCACA TTTGCTGAAGCGCAACACTGCTCTGGTCAACGTTGCGCTTTCGTCAAACC AGCTCGGGGTTTTCGCGTGCAGAGCTTTCGGCGAATCGCTGTGCTCGAAT TCTACTCTGAAGTGCTTGAGTCTTGAATCGAATCCGTTGACTGGGGGCGG AGAAGATATTTCGGGAATACGAGCGCTAGCTGAAATGTTTGCTAATAACA GCACCCTAACGTCGGTTAATTTATGGAGGTGTGCGCTCGGGGCAGAGGCA GGAGCGGCACTGTCACGAGGCATGGAATCAAATCACACCATCACCTTCCT TGAGGTTGGGCTGAACGATTTAGCGATGATAGATGAGCACAAGATCAAAA CGTTGTTGGACAGCAACTTCAAGACATTTGAAGAGCATCAAGCAGTGCGC CGGCAAGAGCAGAGTCTTGCAGACAAATTTCTGGGAGAGGAAAAAGCCAT CCAGGAGCAGCTGAGAGCTGAGAGACAATTACGCGAGTGGCTTGAAGACC AAAAACAACTACGCGCCGAGGAGCGTCGGAAGGCAGAAGAGAAAGGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig627:148477..152626-

>mRNA_P-littoralis_Contig627.36.1 ID=mRNA_P-littoralis_Contig627.36.1|Name=mRNA_P-littoralis_Contig627.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1113bp|location=Sequence derived from alignment at P-littoralis_Contig627:148477..152626- (Pylaiella littoralis U1_48)
ATGGGCGACAACAATGAAGCGTTCATGGAAGATTTTGGGGATTTATTAAA
CGACGGGGGAGATCCATACCAGGTGAAAAACGCGCGGAATGCGGCGGAGG
CGCTGGACACATCGCTCCAAGCCCCCAATGCCAACGACTTCTCAAACGCT
CGGCTTATTGAGGAGCTTGAGAATAGGAACTCGCGCGTCAGTGGGTTCCG
AGATCAAGACGTCGTGACTCTTCAGAAAATCTTAGACACAGAGTTCGAGC
TGGAAAAGGAAAGCATCATCAAGCATCAGCGAGAGAAGAGAGAACAGGCC
GCAAAGCAAGCGGGTCTGCAAAGGAAACGAATGATGCTGGAGAGACAACT
GAGGGAGGAAATATCGGAAATCGATAAAGACCACAGAATTGAATTCTGGC
TGACATTGGTCAAGCAAAATGCCACACCACCTACAGCTCAAATCCAAGTC
AATCCGATCACGGCACGAGCCCTCGCCAAGGCGATGTGGACCAACACCTC
GCTCACTAGCCTGGACTTATCGTGTAATGGGATCGACGATGCGGCGGGCG
CATACGTGGCACATTTGCTGAAGCGCAACACTGCTCTGGTCAACGTTGCG
CTTTCGTCAAACCAGCTCGGGGTTTTCGCGTGCAGAGCTTTCGGCGAATC
GCTGTGCTCGAATTCTACTCTGAAGTGCTTGAGTCTTGAATCGAATCCGT
TGACTGGGGGCGGAGAAGATATTTCGGGAATACGAGCGCTAGCTGAAATG
TTTGCTAATAACAGCACCCTAACGTCGGTTAATTTATGGAGGTGTGCGCT
CGGGGCAGAGGCAGGAGCGGCACTGTCACGAGGCATGGAATCAAATCACA
CCATCACCTTCCTTGAGGTTGGGCTGAACGATTTAGCGATGATAGATGAG
CACAAGATCAAAACGTTGTTGGACAGCAACTTCAAGACATTTGAAGAGCA
TCAAGCAGTGCGCCGGCAAGAGCAGAGTCTTGCAGACAAATTTCTGGGAG
AGGAAAAAGCCATCCAGGAGCAGCTGAGAGCTGAGAGACAATTACGCGAG
TGGCTTGAAGACCAAAAACAACTACGCGCCGAGGAGCGTCGGAAGGCAGA
AGAGAAAGGGTGA
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