prot_P-littoralis_Contig625.15.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig625.15.2
Unique Nameprot_P-littoralis_Contig625.15.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length289
Homology
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A6H5KKW4_9PHAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKW4_9PHAE)

HSP 1 Score: 418 bits (1075), Expect = 2.080e-145
Identity = 209/248 (84.27%), Postives = 222/248 (89.52%), Query Frame = 0
Query:    1 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDARAALKLSMDNILMGLVEKYIDGDGEGEAG-----RGVKRKVGGAATAASSANAS 243
            MEFPGA EDPEQRSFIDPVWLQQWGLGP+NALDYFALSPFYDKACNNEQCRMQ VDP+EGLLNLTGLEFML +LPPEMSFL PGQPAP GPQPRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQ PTVQKLIKSRLNKFTHHLNNAFVELSKL+ L DS GGYDW WQKEAK LQEKA+AAEGVGVAE DRDA+AALKLSMDNILMGLVEKYIDGDGEG+ G     RG KRK  G A  ++S +A+
Sbjct:    1 MEFPGAAEDPEQRSFIDPVWLQQWGLGPQNALDYFALSPFYDKACNNEQCRMQSVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFVELSKLAKLRDSGGGYDWAWQKEAKDLQEKAEAAEGVGVAEEDRDAKAALKLSMDNILMGLVEKYIDGDGEGKEGKEPAARGAKRKADGEAVTSASLDAA 248          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: D7G6X0_ECTSI (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X0_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 8.820e-97
Identity = 138/150 (92.00%), Postives = 143/150 (95.33%), Query Frame = 0
Query:    1 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVE 150
            M+FPGA EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDP+EGLLNLTGLEFML +LPPEMSFL PGQPAP GPQPRRLFVIKKQVRKS +SVEVQAIYY+MEGVIYQ PTVQKLIKSRLNKFTHHLNNAF E
Sbjct:    1 MDFPGAAEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPREGLLNLTGLEFMLVELPPEMSFLPPGQPAPAGPQPRRLFVIKKQVRKSPSSVEVQAIYYIMEGVIYQAPTVQKLIKSRLNKFTHHLNNAFGE 150          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A835YVL9_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL9_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.120e-48
Identity = 97/216 (44.91%), Postives = 126/216 (58.33%), Query Frame = 0
Query:    8 EDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGV-DPKEGLLNLTGLEFMLEDLPPEMSFL-QPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDAR-AALKLSMDNILMGLVEKYIDGDGEG 220
            ED  Q SF D +WL+ + LGPE A+DYFALSPFYD+  NNE CRMQG+ D    +  +TG+E+++E+LPPE   L +PG P    PQPR L VIKKQ RKS+T  EV+ +YY+M+G IYQ P+   LI SRL K    L+ +F  L  L   N + G YDW W  EA                     A  +A++   D IL+ LV +Y   +GEG
Sbjct:   16 EDQTQLSFQDTMWLRSFYLGPETAIDYFALSPFYDRTSNNELCRMQGLTDHVAAMQTMTGIEYVVEELPPETDELPEPGAP----PQPRHLMVIKKQYRKSKTQAEVRGVYYIMDGTIYQAPSALALITSRLQKAAFMLSESFAALRALPAHN-ARGAYDWPWNAEAXXXXXXXXXXXXXXXXXXQSQAALSAVRAGADAILLQLVSRYARSEGEG 226          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A2R5GW25_9STRA (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GW25_9STRA)

HSP 1 Score: 126 bits (316), Expect = 5.330e-31
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 0
Query:   14 SFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSF-LQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEG 184
            SF+D  W++ +GL   N LDYFA SPFYD +CNNE  RMQ +          GLE ML D+PP + + L P    PV      LF++ KQ R S+T V  QA+YY+++ VIYQ P++Q+LI +RL+K T+HL NAF ++ K +    S G   +TW  +  A +   Q+AEG
Sbjct:   65 SFLDDNWIRAFGLSAHNVLDYFACSPFYDTSCNNEILRMQNL----------GLE-MLADMPPGIEYRLLPSGHEPV------LFIVVKQERASKTVVRRQALYYILDKVIYQAPSLQRLIATRLSKSTNHLQNAFDQMVKAARYAPSQG---FTWHFDGDAHRAWRQSAEG 216          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: M4C4K5_HYAAE (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4K5_HYAAE)

HSP 1 Score: 118 bits (296), Expect = 2.830e-28
Identity = 70/170 (41.18%), Postives = 98/170 (57.65%), Query Frame = 0
Query:    6 APEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 173
            A  D    SF D VWLQ + L P+  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L  LP     L           P++L+VI+KQ R SRT VE  A+YYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W +  + K
Sbjct:    5 AHADDYNASFRDTVWLQSFPLNPQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGIEYEL--LPNAAKQL-----------PQQLYVIRKQRRSSRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLAAGVRFSPTEG-YAWDFSSKDK 157          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A0N7L744_PLAHL (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L744_PLAHL)

HSP 1 Score: 112 bits (280), Expect = 5.460e-27
Identity = 66/154 (42.86%), Postives = 91/154 (59.09%), Query Frame = 0
Query:    1 MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELS 152
            ME  G  +D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L  LP     L           P++L++I+KQ R  RT VE  AIYYV++G +YQ P +  ++ SRL K ++ +N AF  L+
Sbjct:    1 MEVAGHVDD-YNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRINKAFHGLA 137          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: D0NQQ4_PHYIT (Mediator of RNA polymerase II transcription subunit 6 n=15 Tax=Peronosporaceae TaxID=4777 RepID=D0NQQ4_PHYIT)

HSP 1 Score: 114 bits (285), Expect = 8.280e-27
Identity = 66/167 (39.52%), Postives = 93/167 (55.69%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 173
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L NL G+E+ L              P      P++LF+I+KQ R  RT VE  AIYYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W +  + K
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNLRGVEYEL-------------LPNTAKQMPQQLFIIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAWDFSSKDK 157          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A484EGT8_BRELC (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EGT8_BRELC)

HSP 1 Score: 112 bits (279), Expect = 1.250e-26
Identity = 64/158 (40.51%), Postives = 91/158 (57.59%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDW 166
            D    SF D VWLQ + L  +  L YFALSPFYD++CNNE+ +MQ +   E L NL G+E+ L  LP     L           P++L++I+KQ R  RT VE  A+YYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W
Sbjct:    8 DDYNASFRDTVWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLG-LEQLKNLRGVEYEL--LPNAAKQL-----------PQQLYIIRKQRRNGRTQVEPLAVYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHGLAAGVRFSPTEG-YAW 150          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: A0A8K1CUM6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUM6_PYTOL)

HSP 1 Score: 111 bits (277), Expect = 1.660e-25
Identity = 65/165 (39.39%), Postives = 94/165 (56.97%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKE 171
            D    SF D +WLQ + L  +  L YFALSPFYD++CNNE+ +MQ  G+D    L N+ G+E+ L  LP     L           P++LF+I+KQ R  RT V+  A+YYV++G +YQ P +  ++ SRL K +H +N AF  L+     + + G Y W +  E
Sbjct:    8 DDYNASFHDTIWLQSFPLNAQTVLHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEYEL--LPNAAKQL-----------PQQLFLIQKQRRLGRTQVKPLAVYYVLDGRVYQAPNIHAMLTSRLKKCSHRVNKAFHALAAGVRFSPTEG-YAWDFSSE 155          
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Match: K3WSB9_GLOUD (Mediator of RNA polymerase II transcription subunit 6 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB9_GLOUD)

HSP 1 Score: 111 bits (277), Expect = 1.900e-25
Identity = 65/167 (38.92%), Postives = 95/167 (56.89%), Query Frame = 0
Query:    9 DPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQCRMQ--GVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIKKQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVELSKLSTLNDSAGGYDWTWQKEAK 173
            D    SF D +WLQ + L  +  + YFALSPFYD++CNNE+ +MQ  G+D    L N+ G+E+  E LP     L           P++LF+I+KQ R  RT VE  AIYYV++G +YQ P +  ++ SRL K ++ +N AF  L+     + + G Y W +  + K
Sbjct:    8 DDYNASFRDTMWLQSFPLNAQTVIHYFALSPFYDRSCNNERLKMQRLGLDQ---LKNMRGIEY--EVLPNTAKQL-----------PQQLFLIRKQRRSGRTQVEPLAIYYVLDGTVYQAPNIHAMLTSRLKKCSYRVNKAFHTLAAGVRFSPTEG-YAWDFSSKDK 157          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig625.15.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KKW4_9PHAE2.080e-14584.27Mediator of RNA polymerase II transcription subuni... [more]
D7G6X0_ECTSI8.820e-9792.00Mediator of RNA polymerase II transcription subuni... [more]
A0A835YVL9_9STRA1.120e-4844.91Mediator of RNA polymerase II transcription subuni... [more]
A0A2R5GW25_9STRA5.330e-3143.60Mediator of RNA polymerase II transcription subuni... [more]
M4C4K5_HYAAE2.830e-2841.18Mediator of RNA polymerase II transcription subuni... [more]
A0A0N7L744_PLAHL5.460e-2742.86Mediator of RNA polymerase II transcription subuni... [more]
D0NQQ4_PHYIT8.280e-2739.52Mediator of RNA polymerase II transcription subuni... [more]
A0A484EGT8_BRELC1.250e-2640.51Mediator of RNA polymerase II transcription subuni... [more]
A0A8K1CUM6_PYTOL1.660e-2539.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WSB9_GLOUD1.900e-2538.92Mediator of RNA polymerase II transcription subuni... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038566Mediator complex, subunit Med6 superfamilyGENE3D3.10.450.580Mediator complex, subunit Med6coord: 6..151
e-value: 1.7E-36
score: 127.1
IPR007018Mediator complex, subunit Med6PFAMPF04934Med6coord: 15..156
e-value: 2.7E-37
score: 127.5
IPR007018Mediator complex, subunit Med6PANTHERPTHR13104MED-6-RELATEDcoord: 7..213
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 271..288
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 264..288
NoneNo IPR availablePANTHERPTHR13104:SF0MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6coord: 7..213

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig625contigP-littoralis_Contig625:26568..29040 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig625.15.2mRNA_P-littoralis_Contig625.15.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig625 25574..29071 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig625.15.2 ID=prot_P-littoralis_Contig625.15.2|Name=mRNA_P-littoralis_Contig625.15.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=289bp
MEFPGAPEDPEQRSFIDPVWLQQWGLGPENALDYFALSPFYDKACNNEQC
RMQGVDPKEGLLNLTGLEFMLEDLPPEMSFLQPGQPAPVGPQPRRLFVIK
KQVRKSRTSVEVQAIYYVMEGVIYQTPTVQKLIKSRLNKFTHHLNNAFVE
LSKLSTLNDSAGGYDWTWQKEAKALQEKAQAAEGVGVAEGDRDARAALKL
SMDNILMGLVEKYIDGDGEGEAGRGVKRKVGGAATAASSANASRSAAAAV
GAASSSSSAAVLGAPTVGSSAPIKNEATTIAAPTNPAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038566Mediator_Med6_sf
IPR007018Mediator_Med6