mRNA_P-littoralis_Contig624.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig624.21.1
Unique NamemRNA_P-littoralis_Contig624.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: D7FQ30_ECTSI (Dynein light chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ30_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 1.670e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1
Query:  154 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR
Sbjct:    1 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A6H5JF01_9PHAE (Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF01_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 3.040e-60
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 1
Query:  154 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            MSNKHQHIFAEDMSDEMC FALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR
Sbjct:    1 MSNKHQHIFAEDMSDEMCHFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 92          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A836CC04_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC04_9STRA)

HSP 1 Score: 168 bits (426), Expect = 7.110e-52
Identity = 76/92 (82.61%), Postives = 87/92 (94.57%), Query Frame = 1
Query:  154 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            M+NKHQHIFAEDM+D+MCQFAL+TS+EAF LTI KGQVFT IAS IR+ FEK+YGRGWNVVVGR+FGAYVTHEIKTYMYFTV+PGVYVL+W+
Sbjct:    1 MANKHQHIFAEDMTDDMCQFALKTSEEAFHLTINKGQVFTAIASYIRRTFEKTYGRGWNVVVGRAFGAYVTHEIKTYMYFTVIPGVYVLIWK 92          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A482S6R4_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S6R4_9ARCH)

HSP 1 Score: 117 bits (293), Expect = 3.490e-31
Identity = 53/85 (62.35%), Postives = 68/85 (80.00%), Query Frame = 1
Query:  175 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            +FAEDMS+E  + A++ +++AF LTI  G V +TIA  IRK F++ + RGWN +VGRSFGAYVTHEIKTY+YFTV PG YVLLW+
Sbjct:   44 VFAEDMSEEWSKDAIKAARDAFALTIASGDVHSTIADFIRKKFDRDHERGWNCIVGRSFGAYVTHEIKTYIYFTVQPGTYVLLWK 128          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A7S4E7C9_9STRA (Dynein light chain n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7C9_9STRA)

HSP 1 Score: 114 bits (285), Expect = 3.670e-30
Identity = 53/92 (57.61%), Postives = 69/92 (75.00%), Query Frame = 1
Query:  154 MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            M+   Q +FAEDMS+E   F LE + +AF     +G+V++ +A+ IR A EK YG+GWNVVVG+SFGA+VTHEIKTY Y +VVPGV VL+WR
Sbjct:    1 MAKATQQVFAEDMSEEKVDFCLEIATDAFNQASFQGKVYSYVANFIRAALEKQYGKGWNVVVGKSFGAFVTHEIKTYFYGSVVPGVCVLIWR 92          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A485KYL8_9STRA (Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485KYL8_9STRA)

HSP 1 Score: 112 bits (281), Expect = 9.290e-30
Identity = 50/85 (58.82%), Postives = 66/85 (77.65%), Query Frame = 1
Query:  175 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            +FAEDM+D M +  + T+++AFQL +  G+ F+TIA  +R+  EK YGRGWN +VG SFGAYVTHEIKTY+YF+V  GV VL+WR
Sbjct:   13 VFAEDMTDVMLEKVVATAKDAFQLQVASGKTFSTIAEFVRRNMEKEYGRGWNCIVGLSFGAYVTHEIKTYVYFSVASGVSVLVWR 97          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A0P1AY91_PLAHL (Dynein light chain n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AY91_PLAHL)

HSP 1 Score: 112 bits (279), Expect = 1.920e-29
Identity = 55/98 (56.12%), Postives = 69/98 (70.41%), Query Frame = 1
Query:  154 MSNKHQH------IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            MSNK         +FAEDM+D M    L T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:    1 MSNKSNDKFHKVVVFAEDMTDAMLDKVLSTAKDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAIGVSVLVWK 98          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A7S3H299_9STRA (Dynein light chain n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H299_9STRA)

HSP 1 Score: 108 bits (271), Expect = 5.290e-28
Identity = 50/89 (56.18%), Postives = 66/89 (74.16%), Query Frame = 1
Query:  163 KHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            ++  +FAEDMS+E  + A + +++AF +TI+ G   +TIA  IRK F+  +  GWN +VGRSFGAYVTHEIKTY YF+V PG YVLLWR
Sbjct:   28 EYLQVFAEDMSEEWARDAQKIARDAFAITISSGDAHSTIADFIRKKFDVGHMAGWNCIVGRSFGAYVTHEIKTYTYFSVQPGTYVLLWR 116          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: H3HCG0_PHYRM (Dynein light chain n=21 Tax=Oomycota TaxID=4762 RepID=H3HCG0_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 5.630e-28
Identity = 51/82 (62.20%), Postives = 64/82 (78.05%), Query Frame = 1
Query:  175 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVL 420
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL
Sbjct:   14 VFAEDMTDAMLEKALGTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVL 95          
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Match: A0A225VFG7_9STRA (Dynein light chain n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VFG7_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.250e-27
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1
Query:  175 IFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAFEKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR 429
            +FAEDM+D M + AL T+++AFQL +T  + F+TIA  +R+  EK YGRGWN VVG SFGAYVTHEIKTY+YF+V  GV VL+W+
Sbjct:   14 VFAEDMTDVMLEKALSTARDAFQLQVTSEKTFSTIAEFVRRNMEKEYGRGWNCVVGSSFGAYVTHEIKTYVYFSVAAGVSVLVWK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig624.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ30_ECTSI1.670e-60100.00Dynein light chain n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF01_9PHAE3.040e-6098.91Dynein light chain n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A836CC04_9STRA7.110e-5282.61Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A482S6R4_9ARCH3.490e-3162.35Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S4E7C9_9STRA3.670e-3057.61Dynein light chain n=1 Tax=Pelagomonas calceolata ... [more]
A0A485KYL8_9STRA9.290e-3058.82Dynein light chain n=8 Tax=Saprolegniaceae TaxID=4... [more]
A0A0P1AY91_PLAHL1.920e-2956.12Dynein light chain n=1 Tax=Plasmopara halstedii Ta... [more]
A0A7S3H299_9STRA5.290e-2856.18Dynein light chain n=1 Tax=Spumella elongata TaxID... [more]
H3HCG0_PHYRM5.630e-2862.20Dynein light chain n=21 Tax=Oomycota TaxID=4762 Re... [more]
A0A225VFG7_9STRA1.250e-2761.18Dynein light chain n=1 Tax=Phytophthora megakarya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig624contigP-littoralis_Contig624:99061..100017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ30
PFAMsDynein_light
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.99e-62
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007670.1
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size279
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791302.5515459-CDS-P-littoralis_Contig624:99060..992281680791302.5515459-CDS-P-littoralis_Contig624:99060..99228Pylaiella littoralis U1_48CDSP-littoralis_Contig624 99061..99228 -
1680791302.5639684-CDS-P-littoralis_Contig624:99753..998641680791302.5639684-CDS-P-littoralis_Contig624:99753..99864Pylaiella littoralis U1_48CDSP-littoralis_Contig624 99754..99864 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791302.5741875-UTR-P-littoralis_Contig624:99864..1000171680791302.5741875-UTR-P-littoralis_Contig624:99864..100017Pylaiella littoralis U1_48UTRP-littoralis_Contig624 99865..100017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig624.21.1prot_P-littoralis_Contig624.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig624 99061..99864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig624.21.1

>prot_P-littoralis_Contig624.21.1 ID=prot_P-littoralis_Contig624.21.1|Name=mRNA_P-littoralis_Contig624.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=93bp
MSNKHQHIFAEDMSDEMCQFALETSQEAFQLTITKGQVFTTIASCIRKAF
EKSYGRGWNVVVGRSFGAYVTHEIKTYMYFTVVPGVYVLLWR*
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mRNA from alignment at P-littoralis_Contig624:99061..100017-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig624.21.1 ID=mRNA_P-littoralis_Contig624.21.1|Name=mRNA_P-littoralis_Contig624.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=957bp|location=Sequence derived from alignment at P-littoralis_Contig624:99061..100017- (Pylaiella littoralis U1_48)
GGAGGACAGCAACGTGTGGAGTAAAGAGCGGTCATACCGCTTAGACCCCC GGCGGGTGGAACGAGGAAAGAGTGCTGGATTGGACATTGACGGAGCAGAT TAATCAACCAAGGTGGAGTGTTTGTTTATCGTCGGCGCACGACTGTCGTC GTCATGTCGAACAAACATCAGCACATCTTCGCTGAAGATATGTCGGACGA AATGTGCCAGTTCGCGCTAGAGACCAGCCAAGAGGCCTTCCAGCTGACCA TCACGAAGGGCCAGGTGGGACAGGAGATGATGTGCGTCCCATTTTCATTT ACCAAATAATCCGAAGTATGAGCAGTGGTGTGATAGTGATCGTCAAGTCA TCACAGCCAGCCCAATATTTTGAGTTCAGCATAAAACCTTTGGAGGAAAA TGGCGGGGTATTTGTCACAGTCACAAAGGCTTCGAATAGCCTCGAAGAGA AAAATCATTCCTGACGCCAGCTTACACGAGAGAAAAAGAAATTACATGAT CACTACCGATGACAACCGCTTGATCAACACTACTTGTATAATGTTCTCCT TCGACGTAGTTCCGATCCGTAAAACAGAAGCATTCCTCTCCCGAACACGC GCCTTCCCGTGCTCGGTCTGGCAACAGACGTAGAGTAGGTGCATTTATCC GTGAAACGGAATAGATCAACACTTGCATACCTACATTTTCACCGCGCCAG GAATAAACCTACCTTTGACGACGATGACGACGATGACGACGATGATGACG ATGATGACACCATGAACAATTCAATATTGCACACGACAGGTGTTCACAAC GATCGCCTCGTGCATCCGCAAAGCTTTTGAAAAGTCGTACGGGCGAGGCT GGAACGTCGTCGTGGGGAGAAGTTTTGGAGCCTACGTGACGCACGAGATC AAGACATACATGTACTTTACGGTTGTCCCAGGAGTCTATGTTTTGCTCTG GAGGTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig624:99061..100017-

>mRNA_P-littoralis_Contig624.21.1 ID=mRNA_P-littoralis_Contig624.21.1|Name=mRNA_P-littoralis_Contig624.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=279bp|location=Sequence derived from alignment at P-littoralis_Contig624:99061..100017- (Pylaiella littoralis U1_48)
ATGTCGAACAAACATCAGCACATCTTCGCTGAAGATATGTCGGACGAAAT
GTGCCAGTTCGCGCTAGAGACCAGCCAAGAGGCCTTCCAGCTGACCATCA
CGAAGGGCCAGGTGTTCACAACGATCGCCTCGTGCATCCGCAAAGCTTTT
GAAAAGTCGTACGGGCGAGGCTGGAACGTCGTCGTGGGGAGAAGTTTTGG
AGCCTACGTGACGCACGAGATCAAGACATACATGTACTTTACGGTTGTCC
CAGGAGTCTATGTTTTGCTCTGGAGGTGA
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