mRNA_P-littoralis_Contig624.1.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig624.1.1
Unique NamemRNA_P-littoralis_Contig624.1.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 1.080e-64
Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 1
Query:    1 MADDEQAVAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
            MADDEQA +E QE+VTER+IE+LIAEIPE+LQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct:    1 MADDEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.400e-25
Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 1
Query:   76 EIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
            +IPE++ +KA  +   AMD++ IEKDIAT +K  FD++  G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct:   20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.930e-25
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1
Query:   52 RQIEILIAEIPE----DLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
            R++ IL AE PE    DLQ+ A R+V  ++ K+ I KD+AT+VK+HFDE+  G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct:   15 RKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 6.570e-22
Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query:   49 ERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 285
            ER + +L AE+PEDL+ KA      A+D +++EKD+A  VKK FDE   G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct:   10 ERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 6.880e-22
Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query:   76 EIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 273
            +IPE LQ+KA  RV   + +  + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct:   10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S2CC43_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.240e-21
Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    1 MADDEQAVAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            MADD      G++ V+ R++ +     P ++ + A  ++  A+DK+ IEKD+AT VK  FD++  G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct:    1 MADDSDEEEVGKKKVSTRKVHLHQVLAPNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A673V1F2_SURSU (Dynein light chain n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A673V1F2_SURSU)

HSP 1 Score: 89.7 bits (221), Expect = 5.690e-20
Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   22 VAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            + EG  T+++R+  I  A++ ED+QQ A      AM+KY+IEKDIA  +KK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:    3 IGEGGVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 97          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: H3DFM3_TETNG (Dynein light chain n=2 Tax=Bilateria TaxID=33213 RepID=H3DFM3_TETNG)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-19
Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 1
Query:   37 ETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            +T+T+R+  I  A++ ED+QQ A      AM+KY+IEKDIA  +KK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:    1 DTMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 90          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A448WG77_9PLAT (Dynein light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT)

HSP 1 Score: 88.2 bits (217), Expect = 1.860e-19
Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query:   73 AEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            A++PED+Q +A R    AMDKY+IEKDIA  +KK FD+    +WHC+ GR+FG  VTHETKH  +F   Q+ VLLF S
Sbjct:   13 ADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90          
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: H3BFR6_LATCH (Dynein light chain n=6 Tax=Eukaryota TaxID=2759 RepID=H3BFR6_LATCH)

HSP 1 Score: 88.6 bits (218), Expect = 2.540e-19
Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   34 QETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
            Q  ++ER+  I  A++PED+QQ A      A++KY+IEKDIA  +KK FD++   +WHC+ GR+FG  VTHETKH  +F   Q+ +LLF S
Sbjct:   24 QANMSERKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 114          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ38_ECTSI1.080e-6493.27Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 R... [more]
A0A7S2RLM3_9STRA2.400e-2560.76Dynein light chain n=1 Tax=Rhizochromulina marina ... [more]
A0A7S2UW34_9STRA3.930e-2557.14Dynein light chain n=1 Tax=Fibrocapsa japonica Tax... [more]
A0A7S1U8R4_9STRA6.570e-2256.96Dynein light chain n=1 Tax=Phaeomonas parva TaxID=... [more]
A0A835YLR1_9STRA6.880e-2263.64Dynein light chain n=1 Tax=Tribonema minus TaxID=3... [more]
A0A7S2CC43_9STRA2.240e-2144.12Dynein light chain n=1 Tax=Dictyocha speculum TaxI... [more]
A0A673V1F2_SURSU5.690e-2047.37Dynein light chain n=2 Tax=Laurasiatheria TaxID=31... [more]
H3DFM3_TETNG1.320e-1948.89Dynein light chain n=2 Tax=Bilateria TaxID=33213 R... [more]
A0A448WG77_9PLAT1.860e-1955.13Dynein light chain n=2 Tax=Protopolystoma xenopodi... [more]
H3BFR6_LATCH2.540e-1948.35Dynein light chain n=6 Tax=Eukaryota TaxID=2759 Re... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig624contigP-littoralis_Contig624:15323..16573 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FQ38
PFAMsDynein_light
Model size596
Max annot lvl2759|Eukaryota
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.29e-67
EggNOG OGsKOG3430@1|root,KOG3430@2759|Eukaryota
Ec32 ortholog descriptionDynein light chain
Ec32 orthologEc-01_007600.1
Descriptionpositive regulation of ATP-dependent microtubule motor activity, plus-end-directed
Cds size315
COG categoryS
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791301.312808-CDS-P-littoralis_Contig624:15322..153791680791301.312808-CDS-P-littoralis_Contig624:15322..15379Pylaiella littoralis U1_48CDSP-littoralis_Contig624 15323..15379 +
1680791301.3260636-CDS-P-littoralis_Contig624:15681..158371680791301.3260636-CDS-P-littoralis_Contig624:15681..15837Pylaiella littoralis U1_48CDSP-littoralis_Contig624 15682..15837 +
1680791301.3353214-CDS-P-littoralis_Contig624:16190..162921680791301.3353214-CDS-P-littoralis_Contig624:16190..16292Pylaiella littoralis U1_48CDSP-littoralis_Contig624 16191..16292 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791301.3464413-UTR-P-littoralis_Contig624:16292..165731680791301.3464413-UTR-P-littoralis_Contig624:16292..16573Pylaiella littoralis U1_48UTRP-littoralis_Contig624 16293..16573 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig624.1.1prot_P-littoralis_Contig624.1.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig624 15323..16292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig624.1.1

>prot_P-littoralis_Contig624.1.1 ID=prot_P-littoralis_Contig624.1.1|Name=mRNA_P-littoralis_Contig624.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp
MADDEQAVAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEK
DIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLF
CSPE*
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mRNA from alignment at P-littoralis_Contig624:15323..16573+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig624.1.1 ID=mRNA_P-littoralis_Contig624.1.1|Name=mRNA_P-littoralis_Contig624.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1251bp|location=Sequence derived from alignment at P-littoralis_Contig624:15323..16573+ (Pylaiella littoralis U1_48)
ATGGCGGATGATGAACAGGCAGTCGCGGAGGGACAGGAAACGGTAACAGA GAGGCAGGTATGAAATGTTGCTGAACGATGTATGGAATGCTAATGATATC ACGGCACACAAAAAAATGTTCTGACTACCGGTCATGTTATCTTTGGTATC GTGAACAACACTTACCTGTACGATAGTCAGCCTTGAAGTTGTGCTCTTCT CACTTTCTGTAGCTCATCCCATAGTTTCCCTAAGCGACGTGCGTACCGGC AGTTTTCATGTATACTGTACAGCAGTAGTTGCTTCTCCTCCAAAATCACG CCGCAGGGTTTGGCGGTGGCAACTCACGAAATATTCTTGCCGCTCTTTTG GGCGCACAGATTGAGATACTGATTGCAGAAATCCCGGAAGACCTTCAGCA GAAGGCAAAACGACGAGTCTGTCTGGCGATGGACAAGTATGACATCGAGA AGGACATAGCTACCGACGTTAAGAAGCACTTCGACGAAGAATGCGAAGGC TCCTGGCATTGCGTGGTGAGGGTGTGATCGCATGGTAGCATGAAGGTAGA ATCACGAATTCACTTCGCATACGGGCAAGTAATTGCATCGAACAGTCTCT GCGCGTCGAAAACTACACAGTCAAGTGTGAGTAAAATAAAACTAATGTGT GATCGATCCAAGAACAACCGCGATACACCACGCTGCTGATTAAAGTACAT TTTCATTTCCCATTCAGTATACCTTCCTTTGGCACGTACTTCCTCCTTCG TAGATACCAACCGCGAACACGTGTGCTCCTTCTTATCACCATCCCTCGAC CCACCCCCCCCTCTTTCCTCTTCCCACAAACTTGTCCCCCCTGCTCCCCC CCCTGCCCTTTGCCGAAGTCCGGACGGAGTTTTGGTTGCTCCGTTACCCA CGAAACCAAGCACCTCTTCTTCTTCAAGTGTGACCAGATGTTCGTGTTAC TCTTCTGTTCTCCCGAGTAGATACTGTGTAGGGCTGAGGTTTTGAGGTAG CTCGTTTGTCGGCGCGGGCATGTTTGTGTTTTGTAAATACTTTCGAAATA CTTTCGAAAAGGGAAAATTATGTCGATGAATCTCACCAACGTGGTGCGGA TCATCTAGAACAGATTGCTCTCCTGAGAGGATGGAGCCATTCAACTCATT GTAGACTCGGTGCAGTTCTTGTTGAGTGTGGTGGCGTTCATAGCTGGGAT GAACATCTCGCGGGTGGGGGAAATTTACATTTGGCTAGTGTACACCAGAG G
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Coding sequence (CDS) from alignment at P-littoralis_Contig624:15323..16573+

>mRNA_P-littoralis_Contig624.1.1 ID=mRNA_P-littoralis_Contig624.1.1|Name=mRNA_P-littoralis_Contig624.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig624:15323..16573+ (Pylaiella littoralis U1_48)
ATGGCGGATGATGAACAGGCAGTCGCGGAGGGACAGGAAACGGTAACAGA
GAGGCAGATTGAGATACTGATTGCAGAAATCCCGGAAGACCTTCAGCAGA
AGGCAAAACGACGAGTCTGTCTGGCGATGGACAAGTATGACATCGAGAAG
GACATAGCTACCGACGTTAAGAAGCACTTCGACGAAGAATGCGAAGGCTC
CTGGCATTGCGTGTCCGGACGGAGTTTTGGTTGCTCCGTTACCCACGAAA
CCAAGCACCTCTTCTTCTTCAAGTGTGACCAGATGTTCGTGTTACTCTTC
TGTTCTCCCGAGTAG
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