mRNA_P-littoralis_Contig624.1.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: D7FQ38_ECTSI (Dynein light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ38_ECTSI) HSP 1 Score: 203 bits (517), Expect = 1.080e-64 Identity = 97/104 (93.27%), Postives = 102/104 (98.08%), Query Frame = 1
Query: 1 MADDEQAVAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
MADDEQA +E QE+VTER+IE+LIAEIPE+LQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE
Sbjct: 1 MADDEQAASEAQESVTERKIEVLIAEIPEELQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 104
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S2RLM3_9STRA (Dynein light chain n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RLM3_9STRA) HSP 1 Score: 103 bits (258), Expect = 2.400e-25 Identity = 48/79 (60.76%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 76 EIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
+IPE++ +KA + AMD++ IEKDIAT +K FD++ G+WHCV+GRSFGCSVTHETK+L FF+ DQ +VLLFCS E
Sbjct: 20 DIPEEMCRKAIGKANEAMDQHTIEKDIATAIKTSFDKDYGGTWHCVAGRSFGCSVTHETKYLVFFQLDQTYVLLFCSDE 98
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S2UW34_9STRA (Dynein light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UW34_9STRA) HSP 1 Score: 103 bits (256), Expect = 3.930e-25 Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 1
Query: 52 RQIEILIAEIPE----DLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCSPE 312
R++ IL AE PE DLQ+ A R+V ++ K+ I KD+AT+VK+HFDE+ G+WHCV GR+FGCSVT+ET++L FFK +Q FVLLF S E
Sbjct: 15 RKVVILRAEFPEVKGEDLQEDAIRKVDESLTKHTISKDVATEVKRHFDEKYGGTWHCVVGRNFGCSVTNETRYLLFFKIEQTFVLLFKSQE 105
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S1U8R4_9STRA (Dynein light chain n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8R4_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 6.570e-22 Identity = 45/79 (56.96%), Postives = 59/79 (74.68%), Query Frame = 1
Query: 49 ERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQM 285
ER + +L AE+PEDL+ KA A+D +++EKD+A VKK FDE G+WHCV GR+FGCS+THETK+L FFK DQ+
Sbjct: 10 ERVLRVLKAEMPEDLKTKAAEVGNQALDAHEVEKDVAQFVKKAFDEASPGTWHCVVGRNFGCSITHETKYLIFFKLDQV 88
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A835YLR1_9STRA (Dynein light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR1_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 6.880e-22 Identity = 42/66 (63.64%), Postives = 53/66 (80.30%), Query Frame = 1
Query: 76 EIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFK 273
+IPE LQ+KA RV + + + KDIA+D+KKHFD+EC G+WHCV GRSFGCSVTHETK+L FF+
Sbjct: 10 DIPEALQKKAIERVVEVLQRVAVAKDIASDMKKHFDQECGGTWHCVVGRSFGCSVTHETKYLLFFR 75
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A7S2CC43_9STRA (Dynein light chain n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CC43_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 2.240e-21 Identity = 45/102 (44.12%), Postives = 69/102 (67.65%), Query Frame = 1
Query: 1 MADDEQAVAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
MADD G++ V+ R++ + P ++ + A ++ A+DK+ IEKD+AT VK FD++ G+WHC+ G+SFGCS+THETK+L + + D +F LLFCS
Sbjct: 1 MADDSDEEEVGKKKVSTRKVHLHQVLAPNNMCELAVEKLDEAIDKHTIEKDMATAVKTTFDKDYGGTWHCIVGKSFGCSITHETKYLMYIQVDHLFCLLFCS 102
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A673V1F2_SURSU (Dynein light chain n=2 Tax=Laurasiatheria TaxID=314145 RepID=A0A673V1F2_SURSU) HSP 1 Score: 89.7 bits (221), Expect = 5.690e-20 Identity = 45/95 (47.37%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 22 VAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
+ EG T+++R+ I A++ ED+QQ A AM+KY+IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S
Sbjct: 3 IGEGGVTMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 97
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: H3DFM3_TETNG (Dynein light chain n=2 Tax=Bilateria TaxID=33213 RepID=H3DFM3_TETNG) HSP 1 Score: 88.6 bits (218), Expect = 1.320e-19 Identity = 44/90 (48.89%), Postives = 62/90 (68.89%), Query Frame = 1
Query: 37 ETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
+T+T+R+ I A++ ED+QQ A AM+KY+IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S
Sbjct: 1 DTMTDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 90
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: A0A448WG77_9PLAT (Dynein light chain n=2 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448WG77_9PLAT) HSP 1 Score: 88.2 bits (217), Expect = 1.860e-19 Identity = 43/78 (55.13%), Postives = 55/78 (70.51%), Query Frame = 1
Query: 73 AEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
A++PED+Q +A R AMDKY+IEKDIA +KK FD+ +WHC+ GR+FG VTHETKH +F Q+ VLLF S
Sbjct: 13 ADMPEDMQAEAVRCCADAMDKYNIEKDIAAYLKKEFDKRYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAVLLFKS 90
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Match: H3BFR6_LATCH (Dynein light chain n=6 Tax=Eukaryota TaxID=2759 RepID=H3BFR6_LATCH) HSP 1 Score: 88.6 bits (218), Expect = 2.540e-19 Identity = 44/91 (48.35%), Postives = 62/91 (68.13%), Query Frame = 1
Query: 34 QETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKDIATDVKKHFDEECEGSWHCVSGRSFGCSVTHETKHLFFFKCDQMFVLLFCS 306
Q ++ER+ I A++PED+QQ A A++KY+IEKDIA +KK FD++ +WHC+ GR+FG VTHETKH +F Q+ +LLF S
Sbjct: 24 QANMSERKAVIKNADMPEDMQQDAVDCATQALEKYNIEKDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVAILLFKS 114 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig624.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig624.1.1 >prot_P-littoralis_Contig624.1.1 ID=prot_P-littoralis_Contig624.1.1|Name=mRNA_P-littoralis_Contig624.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=105bp MADDEQAVAEGQETVTERQIEILIAEIPEDLQQKAKRRVCLAMDKYDIEKback to top mRNA from alignment at P-littoralis_Contig624:15323..16573+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig624.1.1 ID=mRNA_P-littoralis_Contig624.1.1|Name=mRNA_P-littoralis_Contig624.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1251bp|location=Sequence derived from alignment at P-littoralis_Contig624:15323..16573+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig624:15323..16573+ >mRNA_P-littoralis_Contig624.1.1 ID=mRNA_P-littoralis_Contig624.1.1|Name=mRNA_P-littoralis_Contig624.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=315bp|location=Sequence derived from alignment at P-littoralis_Contig624:15323..16573+ (Pylaiella littoralis U1_48)back to top |