mRNA_P-littoralis_Contig623.16.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig623.16.2
Unique NamemRNA_P-littoralis_Contig623.16.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI)

HSP 1 Score: 163 bits (412), Expect = 9.670e-46
Identity = 78/154 (50.65%), Postives = 109/154 (70.78%), Query Frame = 1
Query:   88 EELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQSS 549
            +ELY +FV++K++AN + L YP ++  ++  R ++LY+I+GWLLS++W HVRR K+ E EW+ FVD +K +SA  A+  + EL  +V EV RR++   G GLLF TKVF EF   LE  Y+HILS PFLLGAY GD P E LRV+ E+ AV+ +
Sbjct:  169 QELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDA 322          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 3.490e-43
Identity = 92/220 (41.82%), Postives = 116/220 (52.73%), Query Frame = 1
Query:   55 HRLAGIIGQVDEELYR----LFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRN----------------------------------------ELKGGT-------------GLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
            H L G+I QVDE   R    L   + R AN +T  YP+ Q+A+S  R R+LY+IAGW+LS+I  HVRRH + E+EWMW VDRHKY S + A   E EL  V  EV RRN                                        EL+G T             GL+F T +FL+ +LTLES Y+H+LS P  LG+Y G+ PEEILR++ ESP VQ
Sbjct:  110 HELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEVQRRNDPTRPRGLVFVTSLLQEIEWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQ 329          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE)

HSP 1 Score: 155 bits (392), Expect = 5.950e-42
Identity = 78/163 (47.85%), Postives = 103/163 (63.19%), Query Frame = 1
Query:   55 HRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
            H L  II  VDEELYR+FV+E+ K+N+V L YP +   +S AR ++LY+IAGWLLS+ W   RRH + + EW + V  +   S+  AI  +  L D+V EVD RN+   G GLLFPT  + EFV  +E+  YH L  P+ LG Y GD   EILRV+ ES  V+
Sbjct:   97 HYLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVR 259          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.130e-40
Identity = 71/155 (45.81%), Postives = 103/155 (66.45%), Query Frame = 1
Query:   85 DEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQSS 549
            ++ELY +FV++K++AN + L YP  +  ++  R ++LY+I+GWLLS+ W HVRR K+ E EW+ FVD +K +S   A+  + EL  +V EV RRN+   G GLLF TK F EF    E  Y+HILS PFLLGAY    P ++LRV+ E+  ++ +
Sbjct:  110 NQELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDA 264          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE)

HSP 1 Score: 132 bits (333), Expect = 9.840e-34
Identity = 65/169 (38.46%), Postives = 100/169 (59.17%), Query Frame = 1
Query:   37 PKDLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
            P    LH L+ II QV +ELY   V+E+++AN++ + YP  Q  +S +R ++LY++ GW+ SR W H RR  +   +W   V+ + Y S++ A   +  +      VDR+N+LK G  LL+PT  ++EFV  LE+  +H L  P  LGA+  DFP EI +V+ E   V+
Sbjct:  216 PTKKALHYLSCIINQVAQELYNFLVEERKRANAIKVLYPSTQYLISQSRGQVLYYVCGWMASRAWTHQRRRNLSP-DWYRIVEHNTYQSSEMAKARDPMIGQFAEVVDRKNDLKHGPRLLYPTMQWVEFVFALETGDFHFLKDPMYLGAFLWDFPAEIFKVVGEEEYVK 383          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 8.850e-21
Identity = 46/152 (30.26%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   88 EELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
            +ELY+++V++++ + +V L YP  +  ++  R ++LY++AGW  S+ W H R H +                           T +  +VD +N++K G+GLL+PT  ++EF   +E   +H L  P  L A  GD P EI++V+ E+  V+
Sbjct:    2 QELYKVYVKKRKDSVAVELSYPSVRYQITQPRGQVLYYVAGWAASKAWTHQRSHNLSV----------------------SSNTTLAAKVDSKNDMKNGSGLLYPTVEWVEFKYAVERGIFHFLKKPIFLAACLGDLPAEIVKVVSEAEVVK 131          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.360e-16
Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 1
Query:   88 EELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
            +ELY+++V+E++ + +V L YP ++  ++  R        G  LS+ W  V +H                 S+ +AI  +  L D V +VD +N++K G GLL+PT  ++EFV  +E   +H L  P  L A  GD P EI  V+ E+  V+
Sbjct:    2 QELYQVYVKERKDSVAVELSYPSERYQITKPR--------GHNLSQDWVRVVQHNTRR-------------SSGEAICTDSMLRDSVAKVDSKNDMKNGPGLLYPTMEWVEFVYAVERGIFHFLKKPIFLAACLGDLPAEIFNVVREAEVVK 132          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE)

HSP 1 Score: 76.3 bits (186), Expect = 3.080e-13
Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 1
Query:   55 HRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGA 483
            H+L  + G +DE   +   Q+   A+ V + YP + + +   + R++Y IAGWLLS     V R +     ++ F + HK +SA++        + +   V+ RN    G GL+F +  F  FV  LES Y   L +P LL A
Sbjct:  125 HKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSHKVASAEEFREAYPHFSGLEFVVEERNNPWEGKGLIFASADFFLFVRALESGYRSSLLNPALLAA 267          
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.740e-8
Identity = 47/147 (31.97%), Postives = 62/147 (42.18%), Query Frame = 1
Query:    1 GHYEVQEAVEREPKDLTLHRLAGIIGQVDE------------ELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPT 405
             H  VQE       D   H L  II  VDE            ELYR+F++E+ K+N+V L Y  +   +S AR +                         EW + V  +   S+  AI  +  L D+V EVD RN+   G GLLFPT
Sbjct:  107 NHESVQEVARTRQGDQGTHYLRCIINVVDECYGEGVKPISGQELYRVFMEEREKSNTVALTYLTEIHKISTARGK-------------------------EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPT 228          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FVM7_ECTSI9.670e-4650.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K7M3_9PHAE3.490e-4341.82Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KW14_9PHAE5.950e-4247.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G5R0_ECTSI1.130e-4045.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIR5_9PHAE9.840e-3438.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKY9_9PHAE8.850e-2130.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5B1_9PHAE1.360e-1632.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLR4_9PHAE3.080e-1331.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9K2_9PHAE9.740e-831.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig623contigP-littoralis_Contig623:18536..19497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size550
Hectar predicted targeting categoryother localisation
Exons2
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791299.6205282-CDS-P-littoralis_Contig623:18535..186251680791299.6205282-CDS-P-littoralis_Contig623:18535..18625Pylaiella littoralis U1_48CDSP-littoralis_Contig623 18536..18625 +
1680791299.6335936-CDS-P-littoralis_Contig623:19038..194971680791299.6335936-CDS-P-littoralis_Contig623:19038..19497Pylaiella littoralis U1_48CDSP-littoralis_Contig623 19039..19497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig623.16.2prot_P-littoralis_Contig623.16.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig623 18536..19497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig623.16.2

>prot_P-littoralis_Contig623.16.2 ID=prot_P-littoralis_Contig623.16.2|Name=mRNA_P-littoralis_Contig623.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
GHYEVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEY
PKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYS
SAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYY
HILSHPFLLGAYRGDFPEEILRVILESPAVQSS
back to top

mRNA from alignment at P-littoralis_Contig623:18536..19497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig623.16.2 ID=mRNA_P-littoralis_Contig623.16.2|Name=mRNA_P-littoralis_Contig623.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=962bp|location=Sequence derived from alignment at P-littoralis_Contig623:18536..19497+ (Pylaiella littoralis U1_48)
GGTCACTATGAGGTCCAGGAGGCGGTGGAGCGCGAGCCCAAGGACCTCAC CCTCCACCGGCTGGCGGGCATCATCGGCCAGGTGGACGAGGTATGGGCAT ATGTTCTGCTGTTGTTGCATTGTGTTTCGTTGGTCGTGTAAAATTTGCGC CTGCATGTGTGGGCGCAAATGTGTATGTTTACTTTGCGGATGGGGGGGCT CACCAGAGTGTCTCACCTCTCAATTTTCTCACGGGTCATACGGCATACTC CAAGAGTTCTTGCATGCCTTGCGGCGCTTCGAAAGACGCGCGAAGTCTGG TAGGTTCTTCATGTGTAGCTCGACTGAAAAGTAATTATTTGGCCTACGCT CGTTTGTTTCAGCAGTGAGGGCTGGAATGATGCCCGCCGTTAAATTTGTG GCGTTAATCTAGGCCTGATCTTTTACAAACCCTCGTGCCGTCGTGCGTCC TCGCCCGTTGTTCGCTCCCGACTTGTTCCGTCTGTCCGTTTTCTGTTTCG AAGGAGCTGTACAGGCTGTTTGTCCAAGAGAAGAGGAAGGCGAACTCGGT CACCCTCGAGTACCCGAAGCAACAGATAGCCATGTCGCCAGCGCGCATGC GGATCTTGTACTTCATCGCCGGGTGGTTGTTGAGCAGGATTTGGAAACAC GTCCGTAGGCACAAGGTGGGGGAGGTCGAATGGATGTGGTTCGTGGATCG CCACAAGTACTCGTCCGCGCAGGACGCCATACGGTGCGAGGGAGAACTGA CCGATGTCGTGCGTGAGGTAGATCGGAGGAACGAATTAAAGGGGGGTACG GGACTGTTGTTTCCCACTAAAGTGTTCCTCGAATTCGTTTTGACGCTCGA GTCTGTGTACTACCACATCCTGTCACATCCATTTCTTTTGGGCGCGTATC GCGGCGACTTTCCGGAGGAGATTTTGCGGGTGATACTAGAATCACCCGCA GTTCAAAGTAGT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig623:18536..19497+

>mRNA_P-littoralis_Contig623.16.2 ID=mRNA_P-littoralis_Contig623.16.2|Name=mRNA_P-littoralis_Contig623.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig623:18536..19497+ (Pylaiella littoralis U1_48)
GGTCACTATGAGGTCCAGGAGGCGGTGGAGCGCGAGCCCAAGGACCTCAC
CCTCCACCGGCTGGCGGGCATCATCGGCCAGGTGGACGAGGAGCTGTACA
GGCTGTTTGTCCAAGAGAAGAGGAAGGCGAACTCGGTCACCCTCGAGTAC
CCGAAGCAACAGATAGCCATGTCGCCAGCGCGCATGCGGATCTTGTACTT
CATCGCCGGGTGGTTGTTGAGCAGGATTTGGAAACACGTCCGTAGGCACA
AGGTGGGGGAGGTCGAATGGATGTGGTTCGTGGATCGCCACAAGTACTCG
TCCGCGCAGGACGCCATACGGTGCGAGGGAGAACTGACCGATGTCGTGCG
TGAGGTAGATCGGAGGAACGAATTAAAGGGGGGTACGGGACTGTTGTTTC
CCACTAAAGTGTTCCTCGAATTCGTTTTGACGCTCGAGTCTGTGTACTAC
CACATCCTGTCACATCCATTTCTTTTGGGCGCGTATCGCGGCGACTTTCC
GGAGGAGATTTTGCGGGTGATACTAGAATCACCCGCAGTTCAAAGTAGT
back to top