mRNA_P-littoralis_Contig623.16.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: D7FVM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVM7_ECTSI) HSP 1 Score: 163 bits (412), Expect = 9.670e-46 Identity = 78/154 (50.65%), Postives = 109/154 (70.78%), Query Frame = 1
Query: 88 EELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQSS 549
+ELY +FV++K++AN + L YP ++ ++ R ++LY+I+GWLLS++W HVRR K+ E EW+ FVD +K +SA A+ + EL +V EV RR++ G GLLF TKVF EF LE Y+HILS PFLLGAY GD P E LRV+ E+ AV+ +
Sbjct: 169 QELYGVFVRKKKEANLIKLSYPDKKTRVTKPRAKVLYYISGWLLSKVWTHVRRQKIEEREWVSFVDLNKSASAGAAVEKDKELEHLVGEVKRRHDEINGAGLLFATKVFFEFTYALEIGYFHILSKPFLLGAYLGDLPGETLRVVREATAVRDA 322
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5K7M3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M3_9PHAE) HSP 1 Score: 156 bits (394), Expect = 3.490e-43 Identity = 92/220 (41.82%), Postives = 116/220 (52.73%), Query Frame = 1
Query: 55 HRLAGIIGQVDEELYR----LFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRN----------------------------------------ELKGGT-------------GLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
H L G+I QVDE R L + R AN +T YP+ Q+A+S R R+LY+IAGW+LS+I HVRRH + E+EWMW VDRHKY S + A E EL V EV RRN EL+G T GL+F T +FL+ +LTLES Y+H+LS P LG+Y G+ PEEILR++ ESP VQ
Sbjct: 110 HELCGVINQVDEVNLRRLGGLAENKLRDANVITPTYPRTQVALSIPRRRLLYYIAGWVLSKIVTHVRRHNIQEIEWMWIVDRHKYPSKRAAEENEMELRGVTEEVQRRNDPTRPRGLVFVTSLLQEIEWMWIVDRHKYPSKRAAEGNEMELRGVTEEVQRRNDPTRPRGLVFVTSLFLKLLLTLESGYFHVLSQPAFLGSYLGNLPEEILRLVSESPTVQ 329
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5KW14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW14_9PHAE) HSP 1 Score: 155 bits (392), Expect = 5.950e-42 Identity = 78/163 (47.85%), Postives = 103/163 (63.19%), Query Frame = 1
Query: 55 HRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
H L II VDEELYR+FV+E+ K+N+V L YP + +S AR ++LY+IAGWLLS+ W RRH + + EW + V + S+ AI + L D+V EVD RN+ G GLLFPT + EFV +E+ YH L P+ LG Y GD EILRV+ ES V+
Sbjct: 97 HYLCCIINVVDEELYRVFVKEREKSNTVALTYPTEIHKISTARGKVLYYIAGWLLSKAWSRKRRHNIPDQEWDFIVQHNHSPSSAGAIERDPILQDMVGEVDARNDPVNGAGLLFPTLAWYEFVFHVENGIYHFLRDPYFLGTYLGDLSAEILRVVTESSEVR 259
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: D7G5R0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R0_ECTSI) HSP 1 Score: 148 bits (373), Expect = 1.130e-40 Identity = 71/155 (45.81%), Postives = 103/155 (66.45%), Query Frame = 1
Query: 85 DEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQSS 549
++ELY +FV++K++AN + L YP + ++ R ++LY+I+GWLLS+ W HVRR K+ E EW+ FVD +K +S A+ + EL +V EV RRN+ G GLLF TK F EF E Y+HILS PFLLGAY P ++LRV+ E+ ++ +
Sbjct: 110 NQELYGVFVRKKKEANLIKLSYPDNKTRVTKPRAKVLYYISGWLLSKDWAHVRRQKIEEREWVSFVDLNKSASEGAAVEKDKELEHLVGEVKRRNDEINGAGLLFATKAFFEFTYASEIGYFHILSKPFLLGAYLVGLPGDMLRVVSEATEIRDA 264
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5JIR5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIR5_9PHAE) HSP 1 Score: 132 bits (333), Expect = 9.840e-34 Identity = 65/169 (38.46%), Postives = 100/169 (59.17%), Query Frame = 1
Query: 37 PKDLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
P LH L+ II QV +ELY V+E+++AN++ + YP Q +S +R ++LY++ GW+ SR W H RR + +W V+ + Y S++ A + + VDR+N+LK G LL+PT ++EFV LE+ +H L P LGA+ DFP EI +V+ E V+
Sbjct: 216 PTKKALHYLSCIINQVAQELYNFLVEERKRANAIKVLYPSTQYLISQSRGQVLYYVCGWMASRAWTHQRRRNLSP-DWYRIVEHNTYQSSEMAKARDPMIGQFAEVVDRKNDLKHGPRLLYPTMQWVEFVFALETGDFHFLKDPMYLGAFLWDFPAEIFKVVGEEEYVK 383
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5KKY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKY9_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 8.850e-21 Identity = 46/152 (30.26%), Postives = 81/152 (53.29%), Query Frame = 1
Query: 88 EELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
+ELY+++V++++ + +V L YP + ++ R ++LY++AGW S+ W H R H + T + +VD +N++K G+GLL+PT ++EF +E +H L P L A GD P EI++V+ E+ V+
Sbjct: 2 QELYKVYVKKRKDSVAVELSYPSVRYQITQPRGQVLYYVAGWAASKAWTHQRSHNLSV----------------------SSNTTLAAKVDSKNDMKNGSGLLYPTVEWVEFKYAVERGIFHFLKKPIFLAACLGDLPAEIVKVVSEAEVVK 131
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5K5B1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5B1_9PHAE) HSP 1 Score: 85.5 bits (210), Expect = 1.360e-16 Identity = 49/152 (32.24%), Postives = 79/152 (51.97%), Query Frame = 1
Query: 88 EELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGAYRGDFPEEILRVILESPAVQ 543
+ELY+++V+E++ + +V L YP ++ ++ R G LS+ W V +H S+ +AI + L D V +VD +N++K G GLL+PT ++EFV +E +H L P L A GD P EI V+ E+ V+
Sbjct: 2 QELYQVYVKERKDSVAVELSYPSERYQITKPR--------GHNLSQDWVRVVQHNTRR-------------SSGEAICTDSMLRDSVAKVDSKNDMKNGPGLLYPTMEWVEFVYAVERGIFHFLKKPIFLAACLGDLPAEIFNVVREAEVVK 132
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5KLR4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLR4_9PHAE) HSP 1 Score: 76.3 bits (186), Expect = 3.080e-13 Identity = 45/143 (31.47%), Postives = 71/143 (49.65%), Query Frame = 1
Query: 55 HRLAGIIGQVDEELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPTKVFLEFVLTLESVYYHILSHPFLLGA 483
H+L + G +DE + Q+ A+ V + YP + + + + R++Y IAGWLLS V R + ++ F + HK +SA++ + + V+ RN G GL+F + F FV LES Y L +P LL A
Sbjct: 125 HKLTCVFGAIDEVADKTLTQQTDAAHLVKVAYPAEDVDLDVHQRRLVYNIAGWLLSSALSRVSRQRSLGSAFLPFFNSHKVASAEEFREAYPHFSGLEFVVEERNNPWEGKGLIFASADFFLFVRALESGYRSSLLNPALLAA 267
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Match: A0A6H5K9K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9K2_9PHAE) HSP 1 Score: 61.2 bits (147), Expect = 9.740e-8 Identity = 47/147 (31.97%), Postives = 62/147 (42.18%), Query Frame = 1
Query: 1 GHYEVQEAVEREPKDLTLHRLAGIIGQVDE------------ELYRLFVQEKRKANSVTLEYPKQQIAMSPARMRILYFIAGWLLSRIWKHVRRHKVGEVEWMWFVDRHKYSSAQDAIRCEGELTDVVREVDRRNELKGGTGLLFPT 405
H VQE D H L II VDE ELYR+F++E+ K+N+V L Y + +S AR + EW + V + S+ AI + L D+V EVD RN+ G GLLFPT
Sbjct: 107 NHESVQEVARTRQGDQGTHYLRCIINVVDECYGEGVKPISGQELYRVFMEEREKSNTVALTYLTEIHKISTARGK-------------------------EWDFIVQHNHSPSSAGAIERDPILKDMVGEVDARNDPAAGAGLLFPT 228 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig623.16.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig623.16.2 >prot_P-littoralis_Contig623.16.2 ID=prot_P-littoralis_Contig623.16.2|Name=mRNA_P-littoralis_Contig623.16.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp GHYEVQEAVEREPKDLTLHRLAGIIGQVDEELYRLFVQEKRKANSVTLEYback to top mRNA from alignment at P-littoralis_Contig623:18536..19497+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig623.16.2 ID=mRNA_P-littoralis_Contig623.16.2|Name=mRNA_P-littoralis_Contig623.16.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=962bp|location=Sequence derived from alignment at P-littoralis_Contig623:18536..19497+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig623:18536..19497+ >mRNA_P-littoralis_Contig623.16.2 ID=mRNA_P-littoralis_Contig623.16.2|Name=mRNA_P-littoralis_Contig623.16.2|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig623:18536..19497+ (Pylaiella littoralis U1_48)back to top |