mRNA_P-littoralis_Contig62.163.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.163.1
Unique NamemRNA_P-littoralis_Contig62.163.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.480e-22
Identity = 58/151 (38.41%), Postives = 84/151 (55.63%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE--------TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            P  P P+  ++ ++   + A++A   T               TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+
Sbjct:  657 PVEPAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 806          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.920e-22
Identity = 60/148 (40.54%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            PA    +L+R+E+ R A+ A        + ++ +     TRR   +RE   Y+ E    D D  F  L YW  R  D +  + G V +PA  P++  IARL+LG++ATSCQAERNFSAL  ++  LR N  P+KVE+ +F+RLN+HL+
Sbjct:  465 PAPKKKKLSRLEERRAARVAAATTGGDETGSLEDQSPSTTRRVLIEREVLVYLAENPQLDVDG-FNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLV 611          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.750e-20
Identity = 59/148 (39.86%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:   84 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 229          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 1.830e-19
Identity = 59/148 (39.86%), Postives = 86/148 (58.11%), Query Frame = 1
Query:    1 PAAPVPQLTRMEKIRLAQNAKIARPNTASSAVRE-----TRRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            PA+   +L+R+E+ R A+ A  A    AS +V+       RR   +RE   Y+ E    + D  F  L +W  R  D +   +GNV +PA  P++  IARL LG++A+SCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  649 PASKRKKLSRLEERRAARVA-AASDGGASGSVQAQGSATNRRVLIEREVLVYLAETEQVEVDD-FNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLV 794          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 2.400e-19
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ DL  N    +VE+ + +RLNKHL+
Sbjct:  501 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLL 607          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 1.570e-18
Identity = 46/104 (44.23%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLN 414
            RR   +RE   Y+ E    D D  F  L +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ D R N    +VE+ + +RLN
Sbjct:  118 RRVLIEREMLVYLAEQPQVDVDD-FNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 1.920e-18
Identity = 46/103 (44.66%), Postives = 64/103 (62.14%), Query Frame = 1
Query:  121 QREYAEYMKEAALTDTDPTFTALEYWKPRAVDGL-DKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            +RE   Y+ E    D D  F  + +W  R  + +   +G V APA  P++  IARLHLG++ATSCQAERNFSAL  ++  LR N    KVE+ + +RLN+HL+
Sbjct:  388 EREVLVYLAEQPQVDVDG-FNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLL 489          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 3.660e-18
Identity = 46/108 (42.59%), Postives = 67/108 (62.04%), Query Frame = 1
Query:  106 RRAAAQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKS-GNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLI 426
            RR   +RE   Y+ E    D D  F  + +W  R  D +  + G V +PA  P++  IARLHLG++ATSCQAERNFSAL  ++ +LR N  P +VE+ + +RLN+ ++
Sbjct:  397 RRVLIEREMLVYLAEQPQLDVDG-FNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRML 503          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.070e-16
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   43 RLAQNAKIARPNTASSAVRETRRAA-AQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRD 453
            RLA++   +    A +AV   RR A  +RE   Y+ E    + +  F+ LE+W+ R+          V P   PH+ LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D
Sbjct:  341 RLAKSKAASAGRAAPAAVSTARRGAIVERELRMYLAEDPAEE-EYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD 475          
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 1.220e-16
Identity = 57/138 (41.30%), Postives = 81/138 (58.70%), Query Frame = 1
Query:   43 RLAQNAKIARPNTASSAVRETRRAA-AQREYAEYMKEAALTDTDPTFTALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNFSALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRD 453
            RLA++   +    A +AV   RR A  +RE   Y+ E    + +  F+ LE+W+ R+          V P   PH+ LIARL  G+++TSCQAERNFSAL  ++  LR++  P KVE+ +FLRLN+  IP + KAL D
Sbjct:  669 RLAKSKAASAGRAAPAAVSTARRGAIVERELRMYLAEDPAEE-EYDFSLLEFWQRRSKPRTCAETGEVEPGL-PHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEV-KALHD 803          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JGG8_9PHAE1.480e-2238.41Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JTB8_9PHAE1.920e-2240.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJT6_9PHAE1.750e-2039.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRT6_9PHAE1.830e-1939.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQI6_9PHAE2.400e-1945.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7P7_9PHAE1.570e-1844.23Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KDJ6_9PHAE1.920e-1844.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE3.660e-1842.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE1.070e-1641.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KJ52_9PHAE1.220e-1641.30Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:666390..666842 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog7029.ACYPI51208-PA
PFAMsDimer_Tnp_hAT
Model size454
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.88e-06
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3AJC9@33154|Opisthokonta,3BV3P@33208|Metazoa,3DF56@33213|Bilateria,4224I@6656|Arthropoda,3SQFR@50557|Insecta
DescriptionhAT family C-terminal dimerisation region
Cds size423
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.4800272-UTR-P-littoralis_Contig62:666389..6664191680791295.4800272-UTR-P-littoralis_Contig62:666389..666419Pylaiella littoralis U1_48UTRP-littoralis_Contig62 666390..666419 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791295.4908657-CDS-P-littoralis_Contig62:666419..6668421680791295.4908657-CDS-P-littoralis_Contig62:666419..666842Pylaiella littoralis U1_48CDSP-littoralis_Contig62 666420..666842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.163.1prot_P-littoralis_Contig62.163.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 666420..666842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.163.1

>prot_P-littoralis_Contig62.163.1 ID=prot_P-littoralis_Contig62.163.1|Name=mRNA_P-littoralis_Contig62.163.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=141bp
MEKIRLAQNAKIARPNTASSAVRETRRAAAQREYAEYMKEAALTDTDPTF
TALEYWKPRAVDGLDKSGNVVAPARWPHVGLIARLHLGVDATSCQAERNF
SALKLIVSDLRANTSPAKVEKTIFLRLNKHLIPGLGKALRD
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mRNA from alignment at P-littoralis_Contig62:666390..666842+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.163.1 ID=mRNA_P-littoralis_Contig62.163.1|Name=mRNA_P-littoralis_Contig62.163.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=453bp|location=Sequence derived from alignment at P-littoralis_Contig62:666390..666842+ (Pylaiella littoralis U1_48)
CCAGCGGCGCCAGTGCCTCAGCTGACTAGGATGGAAAAGATAAGGCTGGC TCAGAACGCAAAGATCGCCCGGCCGAATACCGCCAGCTCTGCTGTCCGCG AGACGCGAAGGGCTGCCGCACAACGGGAGTACGCCGAGTACATGAAGGAG GCAGCTCTCACTGACACCGACCCCACTTTCACTGCCCTAGAGTACTGGAA GCCGCGGGCAGTTGATGGGCTCGACAAATCGGGGAACGTTGTCGCTCCTG CCCGCTGGCCGCATGTTGGCTTGATAGCGCGGTTGCACCTAGGCGTTGAT GCAACCAGTTGCCAAGCGGAAAGGAATTTTTCCGCCCTCAAGTTGATCGT TAGCGACCTACGTGCGAACACTTCCCCCGCCAAGGTTGAGAAGACTATTT TTCTTAGGCTTAACAAGCACCTTATCCCCGGGCTAGGGAAGGCGTTGAGG GAT
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:666390..666842+

>mRNA_P-littoralis_Contig62.163.1 ID=mRNA_P-littoralis_Contig62.163.1|Name=mRNA_P-littoralis_Contig62.163.1|organism=Pylaiella littoralis U1_48|type=CDS|length=423bp|location=Sequence derived from alignment at P-littoralis_Contig62:666390..666842+ (Pylaiella littoralis U1_48)
ATGGAAAAGATAAGGCTGGCTCAGAACGCAAAGATCGCCCGGCCGAATAC
CGCCAGCTCTGCTGTCCGCGAGACGCGAAGGGCTGCCGCACAACGGGAGT
ACGCCGAGTACATGAAGGAGGCAGCTCTCACTGACACCGACCCCACTTTC
ACTGCCCTAGAGTACTGGAAGCCGCGGGCAGTTGATGGGCTCGACAAATC
GGGGAACGTTGTCGCTCCTGCCCGCTGGCCGCATGTTGGCTTGATAGCGC
GGTTGCACCTAGGCGTTGATGCAACCAGTTGCCAAGCGGAAAGGAATTTT
TCCGCCCTCAAGTTGATCGTTAGCGACCTACGTGCGAACACTTCCCCCGC
CAAGGTTGAGAAGACTATTTTTCTTAGGCTTAACAAGCACCTTATCCCCG
GGCTAGGGAAGGCGTTGAGGGAT
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