mRNA_P-littoralis_Contig62.78.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig62.78.1
Unique NamemRNA_P-littoralis_Contig62.78.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig62.78.1 vs. uniprot
Match: D8LU96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU96_ECTSI)

HSP 1 Score: 229 bits (585), Expect = 2.450e-65
Identity = 173/389 (44.47%), Postives = 215/389 (55.27%), Query Frame = 3
Query:  621 WTLDRNELVGKLVRRHAFDFDAVSRTFRQHLKCEGVDFNSESTSPAALRKVFASSDRKRPTHRTVASLHSNI--------SDGDNRL----DGDWDHMTRTSAAQ---HLDKNTVARHCSTDTAGGNHNNRQKNEAACRIPKAPGY------------LDEATETATAPSS--STNESAWNFDRFLEEQRRKEVQHDDQKEKIFQKVLSALGSNAEASGAFELPPDILQAWGARKEKIAEEADDAEKRRQKLEEDHALAHQRQSLKQRYLPGSNDSVGEDPLASLTDTYSQ--EDEEGEGSGGLCHRQLLCEEKEKEQGERDDSFTRHQAVAEPVRLELGMDAEVLDEILDEIE-ESAIA----VETNSELSRVLDELDSAAGDKPTTA 1679
            WT DRNELVGKLVRR AFDFDAVS  FR HL+ EGVDF SE T+PAALRKV+AS DRKRP     ++    +         + D  L     GDWD M   S  +   ++  N  +    + T  G +NN    E + ++  +                DE  ++ TAPSS  ST+ES W+F RFLEEQR KE+QHDD+KEKIFQK                                               ED  LA QRQSLK+RYL  S D +GEDPL  L DT +   + EEG+ +GGL  RQ   +E+ +E+ + DD+ T HQA A PVRLELGMDAE LD+IL+E+E ES++A     ETNSELSRVLDELD+AA + P  A
Sbjct:    6 WTPDRNELVGKLVRRFAFDFDAVSNAFRNHLQREGVDFKSEETAPAALRKVYASLDRKRPPRAVESAPLPGVRKENDEPGGEADRTLVDVSGGDWDSMGTGSQGKLNGYIMGNLHSSRSGSVTGEG-YNNLPPPERSDQLGASDDCPSEREDVQHTSGSDEGEKSVTAPSSLPSTDESGWDFGRFLEEQRLKEIQHDDRKEKIFQK-----------------------------------------------EDRHLACQRQSLKKRYLLDSEDFIGEDPLGLLDDTTAPAFQQEEGDIAGGLSPRQSHRQEEAEERLQGDDAHTSHQAAAGPVRLELGMDAEELDKILNELERESSLAGGGWAETNSELSRVLDELDAAASEPPANA 346          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig62.78.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU96_ECTSI2.450e-6544.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig62contigP-littoralis_Contig62:315434..321767 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2157
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_004190.1
Cds size1152
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig62.78.1prot_P-littoralis_Contig62.78.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig62 316000..321328 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791292.068812-UTR-P-littoralis_Contig62:315433..3159991680791292.068812-UTR-P-littoralis_Contig62:315433..315999Pylaiella littoralis U1_48UTRP-littoralis_Contig62 315434..315999 +
1680791292.1482847-UTR-P-littoralis_Contig62:321328..3217671680791292.1482847-UTR-P-littoralis_Contig62:321328..321767Pylaiella littoralis U1_48UTRP-littoralis_Contig62 321329..321767 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791292.0803916-CDS-P-littoralis_Contig62:315999..3160971680791292.0803916-CDS-P-littoralis_Contig62:315999..316097Pylaiella littoralis U1_48CDSP-littoralis_Contig62 316000..316097 +
1680791292.091632-CDS-P-littoralis_Contig62:316827..3169211680791292.091632-CDS-P-littoralis_Contig62:316827..316921Pylaiella littoralis U1_48CDSP-littoralis_Contig62 316828..316921 +
1680791292.105028-CDS-P-littoralis_Contig62:319188..3195811680791292.105028-CDS-P-littoralis_Contig62:319188..319581Pylaiella littoralis U1_48CDSP-littoralis_Contig62 319189..319581 +
1680791292.1179564-CDS-P-littoralis_Contig62:319931..3200721680791292.1179564-CDS-P-littoralis_Contig62:319931..320072Pylaiella littoralis U1_48CDSP-littoralis_Contig62 319932..320072 +
1680791292.1291873-CDS-P-littoralis_Contig62:320626..3209231680791292.1291873-CDS-P-littoralis_Contig62:320626..320923Pylaiella littoralis U1_48CDSP-littoralis_Contig62 320627..320923 +
1680791292.13881-CDS-P-littoralis_Contig62:321199..3213281680791292.13881-CDS-P-littoralis_Contig62:321199..321328Pylaiella littoralis U1_48CDSP-littoralis_Contig62 321200..321328 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig62.78.1

>prot_P-littoralis_Contig62.78.1 ID=prot_P-littoralis_Contig62.78.1|Name=mRNA_P-littoralis_Contig62.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=384bp
MNGLLVDHECTTMPKTFSWTLDRNELVGKLVRRHAFDFDAVSRTFRQHLK
CEGVDFNSESTSPAALRKVFASSDRKRPTHRTVASLHSNISDGDNRLDGD
WDHMTRTSAAQHLDKNTVARHCSTDTAGGNHNNRQKNEAACRIPKAPGYL
DEATETATAPSSSTNESAWNFDRFLEEQRRKEVQHDDQKEKIFQKVLSAL
GSNAEASGAFELPPDILQAWGARKEKIAEEADDAEKRRQKLEEDHALAHQ
RQSLKQRYLPGSNDSVGEDPLASLTDTYSQEDEEGEGSGGLCHRQLLCEE
KEKEQGERDDSFTRHQAVAEPVRLELGMDAEVLDEILDEIEESAIAVETN
SELSRVLDELDSAAGDKPTTATTNTLLRPGVQE*
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mRNA from alignment at P-littoralis_Contig62:315434..321767+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig62.78.1 ID=mRNA_P-littoralis_Contig62.78.1|Name=mRNA_P-littoralis_Contig62.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6334bp|location=Sequence derived from alignment at P-littoralis_Contig62:315434..321767+ (Pylaiella littoralis U1_48)
GTACTACAGCAGTTGAAAATTGAAAAATAAATTTCACACTCGACAATCCG ACATTATTATCACTACAACACCTGTAGGGCGTGATGTTCCAACACGAGAA AAGAGAGCCTACGTGAGTCAAGGATGCGATAACAGAGAGCAGGCGAGGCT ACGATTGTGGACGGCTCCACCAGCGTGCCCACACTGCTGTTGTAGAGCGA TTCCAGCAGTACTCGGATAGTAATGTTGTGAGTGACACAGCGGAAGTCTC ACCATATGTCCTCAGTACTAACACCAGCTAAAAAAAGTGAGCGCCGGCGT GTTTTCTGTCTGTTGCGAATCACTGCTGGCTGCTGGGTGCTGTGGTGCTG GGTGCTGCGGTAAGCTGGCGAGCTGGCTGCGGTACAGCAGGCGGGCTCCC TCGAACCCCCCGAAAGGCCGAACGGAGTTCGAGAAAGGGTGTTGGTTCGG GGTTGGGGGATAGTGAAGTGAAACCGCACGCCCGAACTGGTGCCAAGTGG CCGTCGTGGTGACGAAACTCGACCGGAGTGCAGCGAGCGGTGTACTCCCG CCCTTGGTCTAGGTACATGAATGGTCTACTCGTAGATCACGAATGCACCA CCATGCCGAAGACCTTTTCCTGGACGTTGGACCGAAATGAACTGGTGGGA AAACTCGTCCGTCGGTGAGGAGCGATCTTGTCCATGGCGGAACAAGGAAG GAGCAGTACTGTAGCGGTATCATGACCAAGCGTCACCCTTTCGTCGCACT TTCTCACACAGGCACATGGATACAGAAGTGGCTATCCATCGTGGCTATCC ATCTTTAGATCAATAAATGAGAGCGAACGGTGTTGTGACCTACCTCCAGA TATGCCGGGCCTTTACGGCGGAGTACTGCTTTAGATGCACATGCAGCCTC ACTCAGTGGATGTGAGAGAGAGTTAGACTATGTGCACAGACAGCAGTGCC GATTTTCTCATTGCCTCCTGAGTGTACACGCCCACCTCGGCTACCCCTAT TTGCACGCCACACTTGCAAATAAGACGTGCACGCTCGAAACGCCTCCGCC GGATGGGTTGAAACATGGGATATACACACACGTGACCGACCCAACCCACC CAACCCAACCCAACCCTAACCCTAACCCTAACCCTAACCCTTACGGACGT CCAATCGGGGCCGTGGTGGCGAGACAGGCACGAACGCGGCTGCGCCACGT TCGTGGTCTGCAAGTCAGAATGTTCTTACTTTGCAGGGAGTGTCACTGAG AACCAATCACGAGTCGAGCGTGCACGTTCTTGTTTGCAAGTGCGGCGTGC AAATAGGGGTAGCCCACCTCCCCCCCCCCCCTCTCTCTCAACCCACCCCT CTCGCCCCTCTCTCTCAACTCATCATCATAATGTTTGTCCACAGGCATGC CTTCGACTTTGATGCAGTATCACGCACGTTCAGACAGCACTTGAAATGCG AGGGCGTGGATTTCAATTCCGAATCAACGAGCCCTGCGGTAAGCACTGCC ATCCCTCTGCTGAACACGAAGAGAATATGTGTGACCAAGGCAATACAAAC TCGCGTACATGTTCCTTCATGGTGCATAGAATTTGCTACCATATCTGCCC ATCCAAACAGAACGCAACGCGTCTAGTGCAGATCGCCGATACGACACCAA CCACATGTAATACTGTATCACGACACGAAGACCGCATGTGAACATGTGCT CCGTGTTCGTGATACGGGCTAACCCTATACACGACACAGTCGGCTGACTA TGTGGTGTATAGGATTAGTCTAGCCCCTATCATAGGATTAGCCCCTATCA CGAACAAAAGAACGGCTTTGGGGGTTCGAATCCTAGCTCACCATTCTCCG GGGATTTGCCCCCCTTGCGACGTGCTGCTTGTGAGGAATGATGACTCTTG TATTGAAGAGAGCGTGCGTCACTTTATCCAATCAATGTTCCCAGTTTAAT CAGAGATGGAGAAAGAACACGAGTGCTGGGGATCGAACCCCCGACATTTC CTTTGTTGTAGTCACCGACTATGTGGTGTATATGATTAACCCCTACCACG AACACTCCGTGCACACCTTGCGAAACTGTATGTCATGGAAGATTTCACAG CGATTTCCCATCTCCGATAAATCCACAACAAGAAGAGAGCCAGCATCGAA AGGGTGGTGCATTTTGGAAAAGTCTTGTCGAAAGAAGAATACCGTTCGGT GTAAAACCCTCGTTGCTGTAGGAGCAATCAAGCTCTCAGCAGTCGGCGTG TTGTTGGGTGTTGTATCATTTCTTCGGCAGAATACAGCAAGAAGAAGTGT ACGGCTCACTTTTCGTTAGATGGACCTACCCACTACTATGATGCTGTAGA CTTAGGGCCATTTTAAACATCACGTGATTTGTCCATATTTATGGAAATTT CCATATTTATGAACATTCCGAGGAGGCGTTTGTCCATATTTTTTCCATAA ATGTGGAACCGACTTGGGCCCAAAAAAGTGGCCCAAGTCCATTCCAGATT TATGGAAAGTTTCCATATTTTCCATATTTTCAAATCAGTGTTCAAATCAG TGTGAATACACAGCAACACGCCCGAGGCCTACACGTAATTGCGAGCTCGT AGGGCCATCGAAGCAACCGTAGAGCCACCGCGTCACCAGTTCGGTCGCTG TTAAAGTGGCCGGAGTTGGCCATTTGATTGAGAGAGGCCCCCTTCCTTTG TTTGAAATGATGATGAGCTGCGGGAGAATAATTTACCACAGCAGCAGTCA GCTCTTGTGGTTACCTATACACCACCTCTCAACGCGAATGCTTCGTGGCT ATTACCTCACTATACTGCTCTCTACTAGCAGGGCGTTGCGTCAGAGGTGG TGTCATTCAATCGGCTGCATCATCAGCATCGCGGCGCATGAGATGTTGTC TGCTGATGCTGCTGCTGCTGCTGTTTTCACTTTTTCAGTCGGTAGAACAA GTGGTCTATTTTCAAGTACTAAAAAAGTGGTCAGATTGATCTCTCGATTG ACATTATCAGCTAGTATATTTTAACAACGAGCGACCCTTCTCTCTCTCTC GACTGAATAACCCTGTATCCAACCCAACGCCCCACCGACAGAGAACAGTG AATGGAGACGACCGCCAAGAAGGTTTCACGTTGAGAGATGGTATTGTAGG GAACGAGAAGATGACGGTGGTGGTAATTGCTGTGTCTGTCCTTCACAACA CTTGGATGTGTCTTCTTGTTGATCGAACGTACGTCACCTTTCATGCCTTC TAACGAACTTTTTGGAGGCCATATTTCCATAAATATGGAATCGGTTTTTA CACGTTTAAAAAGAGCTCTCTCGATTCCATAAATATGATCCATATTTATG GAAAATTTCCATATTTATGGAATATGTTTAAAACGAGCCTTACTCATACG CCGGGAGCTCGAATGTCATCAGGTGCTGCGCCTTTTTACGGTAAGATAAA TTAGATGGTAAACAGATGTTAGGCACAAAACCCACCATAGATGAGCTTAC TCACAGCAGTGGTATTAGGCGAGGGAGGGGTGAAGGGGTGGAAGACCCGA GATCCCTCGGAGATTGCCGCGCCTGGTGAGATGGGATCGATTCCCAGAAG CAAATATCTTGCTCTCTGGATGGACCCATTCACTACATCGTCCTCAGTCA GCGTGTCCAAAGGTCTCAGTCAGCGGATTTACTACTTGGCCTGGTATGAA GTCCATCTAACAAACGCACTTCATCCAATCTTCCCCTCGGATTCCCAAAT TTCAGGCACTGAGAAAAGTATTCGCGAGCTCAGATCGGAAACGGCCTACA CACCGAACAGTTGCGTCCTTGCATAGCAATATCAGTGACGGTGACAACAG ACTGGATGGCGATTGGGATCATATGACAAGGACTTCGGCAGCGCAACATT TGGACAAAAACACGGTCGCTCGGCATTGTTCCACCGACACCGCGGGGGGA AACCACAATAATCGACAAAAAAACGAAGCAGCATGCAGGATACCGAAAGC GCCGGGTTATTTAGATGAAGCAACAGAAACGGCAACCGCACCATCATCAT CGACAAACGAGTCTGCGTGGAACTTCGACAGATTCCTTGAAGAGCAGAGA CGGAAAGAGGTTCAGCACGATGATCAAAAGGAGAAGATATTCCAGAAGGT TCGTAATGCGTTCGACACGTAGTCCGAATAAGCGAACATTTTACAGTGTC CACCTGCAATAATGTGAGGGCGTGTGAGGTTGAGGTCAGAGATTCAGTGT GGAAAAAAGCTGCTTGTAGACAATCTCAATTTCTTCAACGTGAAGAACGT TGTATGCATAAGCCTATATCGTCTTGCAGAGGCCTTGGAGTTATACAGAC GGGATAGAACAATGTAGCTCGATTTTCCAGGGCGTACTTTCGAAGGCATG GGGGGCGGTTCATCGAAGTAATTCCGTTTGTGACCCCCGTTTGTTTCTAA AACAAAGCTGGTGATTGGTCTAACCGCAGTCTGATCTCTCCTTCGAAGGT GTTGTCGGCCCTTGGAAGCAACGCCGAAGCTTCAGGTGCTTTCGAGCTTC CGCCAGATATCCTCCAGGCGTGGGGGGCGCGAAAGGAAAAAATCGCGGAG GAAGCAGACGATGCCGAAAAACGCCGGCAGAAACTTGAGGTAGGTCGCAG GGCTGTTGAAGTTTTGACATTCATCAACGTGCACGGCTTTTTTCTCTAGA AAAACGTTACGTCATGAAAGCGGGAATAGTACGGAGTACGGTTTGACAAC GATAAGTGCACGCTAAGTAGCTGCATGCGCCGGGTCCGAGCGCATCTTTC TCTCCACTCAATTACCAGTTGCTGTTTCAGTCATGAGGTGTTGTGCAAAG CGTATAACGTCATTGAGAACACTGTGGATGACGATATGACGTTCGACGCT TATCGAGATCGTTCGTTCGCTTCTCGCTTTCCGGGATTGTCGAAATGTTG GCTTGTACCCATGCATTGCTAGCTTGCAAGTATCTTGCCAAGAGGCTGAT CACTAGCGCCACTGGTATCTTCGATGGTTGCAGTGCAGAGTGTGCGAGGT AAGCTCACGGACATCACCCATCGCACAAACACGTTTGGAGGTCATGGACG TGCCCAGGTAAAAAACGAATTGGGGGCGGTGGGGGAGGGGAGTGGCAGAA TATAACCAGCAATATATTCCGGGCTTGATACCGTCGAACGCAGGAGGACC ACGCTCTTGCTCATCAGCGGCAGTCGTTGAAGCAGCGATACCTTCCGGGG AGCAATGACAGCGTTGGCGAGGACCCTCTCGCTTCTCTCACCGATACTTA CTCGCAAGAGGACGAAGAAGGGGAGGGGTCGGGAGGGTTGTGTCATCGCC AGCTCCTGTGCGAGGAGAAAGAGAAGGAGCAGGGGGAGAGGGATGATTCC TTCACCCGTCACCAAGCAGTGGCAGAGCCTGTACGGCTTGAGCTGGGAAT GGACGCGGAAGTGCTTGATGAAATTCTGGATGAAATCGAGGTGATGTTTA CACACTCCTTTTTCCCTTTTCTGTTGGGTTCGCCCTCTGTTTTTGATTCT TTGTTGTTCGTCACCTTGTGCGCGGTTGTACACTTGGGTCGTAATCGATA GCTGTTATTCTGTACAGACTATATGCACGTTGCACTTGCGGAGAGTGTTA ACTCCTCTTTGCTGACTGCGGGAAAAGGTGATGTGCCCATTAAAAAACAT CGCCCTTCTCTGAATGCGATGCCGCCGTGAATCTCCTACCTACCTACCCG CGATTTTCTCTACCAGGAATCTGCCATCGCCGTCGAGACCAACTCCGAGT TGTCACGAGTACTCGATGAACTTGATAGTGCTGCCGGCGACAAGCCCACT ACTGCCACCACCAACACGCTCCTCCGTCCGGGTGTACAGGAATGACACAT AGCAAGAAGTACAGCACGAGTGGTCAGGAGTATGAATAGGTTCCATATGA ATGCCAATGTATCCATTCCGTAGGTATTTGTCGCTCAACGGCGGCGCTTG TGGTGATGGTGGGAACGATGATGTCCACTACAGAGGAATAATTATTTTTG TGCGCACGGCAAATCATTGATGTAGCAGTATTTTCTCGTTTGCCCGCTTT TTTTGTTACCTTTTGGTGTTACTGCTGCTCATGTGTTGGGAAACATGCCA AGTTATTTTGCCACGGACAACGTACTTTGCGTGACAGCAGTGTTCTTTGT GCGGATGGGTCATCTGGTCCCGCACATGTATTCGTCTGGGTAGGTTCGCT CCTCCCTAAATTTTCCCCCTCCTCAAAAATGAAACGTACATGGCTGGTGT GTCGACAACTACTTCCAGCGCCCGTCAACTTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig62:315434..321767+

>mRNA_P-littoralis_Contig62.78.1 ID=mRNA_P-littoralis_Contig62.78.1|Name=mRNA_P-littoralis_Contig62.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1152bp|location=Sequence derived from alignment at P-littoralis_Contig62:315434..321767+ (Pylaiella littoralis U1_48)
ATGAATGGTCTACTCGTAGATCACGAATGCACCACCATGCCGAAGACCTT
TTCCTGGACGTTGGACCGAAATGAACTGGTGGGAAAACTCGTCCGTCGGC
ATGCCTTCGACTTTGATGCAGTATCACGCACGTTCAGACAGCACTTGAAA
TGCGAGGGCGTGGATTTCAATTCCGAATCAACGAGCCCTGCGGCACTGAG
AAAAGTATTCGCGAGCTCAGATCGGAAACGGCCTACACACCGAACAGTTG
CGTCCTTGCATAGCAATATCAGTGACGGTGACAACAGACTGGATGGCGAT
TGGGATCATATGACAAGGACTTCGGCAGCGCAACATTTGGACAAAAACAC
GGTCGCTCGGCATTGTTCCACCGACACCGCGGGGGGAAACCACAATAATC
GACAAAAAAACGAAGCAGCATGCAGGATACCGAAAGCGCCGGGTTATTTA
GATGAAGCAACAGAAACGGCAACCGCACCATCATCATCGACAAACGAGTC
TGCGTGGAACTTCGACAGATTCCTTGAAGAGCAGAGACGGAAAGAGGTTC
AGCACGATGATCAAAAGGAGAAGATATTCCAGAAGGTGTTGTCGGCCCTT
GGAAGCAACGCCGAAGCTTCAGGTGCTTTCGAGCTTCCGCCAGATATCCT
CCAGGCGTGGGGGGCGCGAAAGGAAAAAATCGCGGAGGAAGCAGACGATG
CCGAAAAACGCCGGCAGAAACTTGAGGAGGACCACGCTCTTGCTCATCAG
CGGCAGTCGTTGAAGCAGCGATACCTTCCGGGGAGCAATGACAGCGTTGG
CGAGGACCCTCTCGCTTCTCTCACCGATACTTACTCGCAAGAGGACGAAG
AAGGGGAGGGGTCGGGAGGGTTGTGTCATCGCCAGCTCCTGTGCGAGGAG
AAAGAGAAGGAGCAGGGGGAGAGGGATGATTCCTTCACCCGTCACCAAGC
AGTGGCAGAGCCTGTACGGCTTGAGCTGGGAATGGACGCGGAAGTGCTTG
ATGAAATTCTGGATGAAATCGAGGAATCTGCCATCGCCGTCGAGACCAAC
TCCGAGTTGTCACGAGTACTCGATGAACTTGATAGTGCTGCCGGCGACAA
GCCCACTACTGCCACCACCAACACGCTCCTCCGTCCGGGTGTACAGGAAT
GA
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