|
|
Homology
BLAST of mRNA_P-littoralis_Contig62.78.1 vs. uniprot
Match: D8LU96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU96_ECTSI) HSP 1 Score: 229 bits (585), Expect = 2.450e-65 Identity = 173/389 (44.47%), Postives = 215/389 (55.27%), Query Frame = 3
Query: 621 WTLDRNELVGKLVRRHAFDFDAVSRTFRQHLKCEGVDFNSESTSPAALRKVFASSDRKRPTHRTVASLHSNI--------SDGDNRL----DGDWDHMTRTSAAQ---HLDKNTVARHCSTDTAGGNHNNRQKNEAACRIPKAPGY------------LDEATETATAPSS--STNESAWNFDRFLEEQRRKEVQHDDQKEKIFQKVLSALGSNAEASGAFELPPDILQAWGARKEKIAEEADDAEKRRQKLEEDHALAHQRQSLKQRYLPGSNDSVGEDPLASLTDTYSQ--EDEEGEGSGGLCHRQLLCEEKEKEQGERDDSFTRHQAVAEPVRLELGMDAEVLDEILDEIE-ESAIA----VETNSELSRVLDELDSAAGDKPTTA 1679
WT DRNELVGKLVRR AFDFDAVS FR HL+ EGVDF SE T+PAALRKV+AS DRKRP ++ + + D L GDWD M S + ++ N + + T G +NN E + ++ + DE ++ TAPSS ST+ES W+F RFLEEQR KE+QHDD+KEKIFQK ED LA QRQSLK+RYL S D +GEDPL L DT + + EEG+ +GGL RQ +E+ +E+ + DD+ T HQA A PVRLELGMDAE LD+IL+E+E ES++A ETNSELSRVLDELD+AA + P A
Sbjct: 6 WTPDRNELVGKLVRRFAFDFDAVSNAFRNHLQREGVDFKSEETAPAALRKVYASLDRKRPPRAVESAPLPGVRKENDEPGGEADRTLVDVSGGDWDSMGTGSQGKLNGYIMGNLHSSRSGSVTGEG-YNNLPPPERSDQLGASDDCPSEREDVQHTSGSDEGEKSVTAPSSLPSTDESGWDFGRFLEEQRLKEIQHDDRKEKIFQK-----------------------------------------------EDRHLACQRQSLKKRYLLDSEDFIGEDPLGLLDDTTAPAFQQEEGDIAGGLSPRQSHRQEEAEERLQGDDAHTSHQAAAGPVRLELGMDAEELDKILNELERESSLAGGGWAETNSELSRVLDELDAAASEPPANA 346
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2157 |
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-14_004190.1 |
| Cds size | 1152 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791292.068812-UTR-P-littoralis_Contig62:315433..315999 | 1680791292.068812-UTR-P-littoralis_Contig62:315433..315999 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig62 315434..315999 + |
| 1680791292.1482847-UTR-P-littoralis_Contig62:321328..321767 | 1680791292.1482847-UTR-P-littoralis_Contig62:321328..321767 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig62 321329..321767 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680791292.0803916-CDS-P-littoralis_Contig62:315999..316097 | 1680791292.0803916-CDS-P-littoralis_Contig62:315999..316097 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig62 316000..316097 + |
| 1680791292.091632-CDS-P-littoralis_Contig62:316827..316921 | 1680791292.091632-CDS-P-littoralis_Contig62:316827..316921 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig62 316828..316921 + |
| 1680791292.105028-CDS-P-littoralis_Contig62:319188..319581 | 1680791292.105028-CDS-P-littoralis_Contig62:319188..319581 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig62 319189..319581 + |
| 1680791292.1179564-CDS-P-littoralis_Contig62:319931..320072 | 1680791292.1179564-CDS-P-littoralis_Contig62:319931..320072 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig62 319932..320072 + |
| 1680791292.1291873-CDS-P-littoralis_Contig62:320626..320923 | 1680791292.1291873-CDS-P-littoralis_Contig62:320626..320923 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig62 320627..320923 + |
| 1680791292.13881-CDS-P-littoralis_Contig62:321199..321328 | 1680791292.13881-CDS-P-littoralis_Contig62:321199..321328 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig62 321200..321328 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig62.78.1 >prot_P-littoralis_Contig62.78.1 ID=prot_P-littoralis_Contig62.78.1|Name=mRNA_P-littoralis_Contig62.78.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=384bp
MNGLLVDHECTTMPKTFSWTLDRNELVGKLVRRHAFDFDAVSRTFRQHLK CEGVDFNSESTSPAALRKVFASSDRKRPTHRTVASLHSNISDGDNRLDGD WDHMTRTSAAQHLDKNTVARHCSTDTAGGNHNNRQKNEAACRIPKAPGYL DEATETATAPSSSTNESAWNFDRFLEEQRRKEVQHDDQKEKIFQKVLSAL GSNAEASGAFELPPDILQAWGARKEKIAEEADDAEKRRQKLEEDHALAHQ RQSLKQRYLPGSNDSVGEDPLASLTDTYSQEDEEGEGSGGLCHRQLLCEE KEKEQGERDDSFTRHQAVAEPVRLELGMDAEVLDEILDEIEESAIAVETN SELSRVLDELDSAAGDKPTTATTNTLLRPGVQE* back to topmRNA from alignment at P-littoralis_Contig62:315434..321767+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig62.78.1 ID=mRNA_P-littoralis_Contig62.78.1|Name=mRNA_P-littoralis_Contig62.78.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=6334bp|location=Sequence derived from alignment at P-littoralis_Contig62:315434..321767+ (Pylaiella littoralis U1_48) GTACTACAGCAGTTGAAAATTGAAAAATAAATTTCACACTCGACAATCCG
ACATTATTATCACTACAACACCTGTAGGGCGTGATGTTCCAACACGAGAA
AAGAGAGCCTACGTGAGTCAAGGATGCGATAACAGAGAGCAGGCGAGGCT
ACGATTGTGGACGGCTCCACCAGCGTGCCCACACTGCTGTTGTAGAGCGA
TTCCAGCAGTACTCGGATAGTAATGTTGTGAGTGACACAGCGGAAGTCTC
ACCATATGTCCTCAGTACTAACACCAGCTAAAAAAAGTGAGCGCCGGCGT
GTTTTCTGTCTGTTGCGAATCACTGCTGGCTGCTGGGTGCTGTGGTGCTG
GGTGCTGCGGTAAGCTGGCGAGCTGGCTGCGGTACAGCAGGCGGGCTCCC
TCGAACCCCCCGAAAGGCCGAACGGAGTTCGAGAAAGGGTGTTGGTTCGG
GGTTGGGGGATAGTGAAGTGAAACCGCACGCCCGAACTGGTGCCAAGTGG
CCGTCGTGGTGACGAAACTCGACCGGAGTGCAGCGAGCGGTGTACTCCCG
CCCTTGGTCTAGGTACATGAATGGTCTACTCGTAGATCACGAATGCACCA
CCATGCCGAAGACCTTTTCCTGGACGTTGGACCGAAATGAACTGGTGGGA
AAACTCGTCCGTCGGTGAGGAGCGATCTTGTCCATGGCGGAACAAGGAAG
GAGCAGTACTGTAGCGGTATCATGACCAAGCGTCACCCTTTCGTCGCACT
TTCTCACACAGGCACATGGATACAGAAGTGGCTATCCATCGTGGCTATCC
ATCTTTAGATCAATAAATGAGAGCGAACGGTGTTGTGACCTACCTCCAGA
TATGCCGGGCCTTTACGGCGGAGTACTGCTTTAGATGCACATGCAGCCTC
ACTCAGTGGATGTGAGAGAGAGTTAGACTATGTGCACAGACAGCAGTGCC
GATTTTCTCATTGCCTCCTGAGTGTACACGCCCACCTCGGCTACCCCTAT
TTGCACGCCACACTTGCAAATAAGACGTGCACGCTCGAAACGCCTCCGCC
GGATGGGTTGAAACATGGGATATACACACACGTGACCGACCCAACCCACC
CAACCCAACCCAACCCTAACCCTAACCCTAACCCTAACCCTTACGGACGT
CCAATCGGGGCCGTGGTGGCGAGACAGGCACGAACGCGGCTGCGCCACGT
TCGTGGTCTGCAAGTCAGAATGTTCTTACTTTGCAGGGAGTGTCACTGAG
AACCAATCACGAGTCGAGCGTGCACGTTCTTGTTTGCAAGTGCGGCGTGC
AAATAGGGGTAGCCCACCTCCCCCCCCCCCCTCTCTCTCAACCCACCCCT
CTCGCCCCTCTCTCTCAACTCATCATCATAATGTTTGTCCACAGGCATGC
CTTCGACTTTGATGCAGTATCACGCACGTTCAGACAGCACTTGAAATGCG
AGGGCGTGGATTTCAATTCCGAATCAACGAGCCCTGCGGTAAGCACTGCC
ATCCCTCTGCTGAACACGAAGAGAATATGTGTGACCAAGGCAATACAAAC
TCGCGTACATGTTCCTTCATGGTGCATAGAATTTGCTACCATATCTGCCC
ATCCAAACAGAACGCAACGCGTCTAGTGCAGATCGCCGATACGACACCAA
CCACATGTAATACTGTATCACGACACGAAGACCGCATGTGAACATGTGCT
CCGTGTTCGTGATACGGGCTAACCCTATACACGACACAGTCGGCTGACTA
TGTGGTGTATAGGATTAGTCTAGCCCCTATCATAGGATTAGCCCCTATCA
CGAACAAAAGAACGGCTTTGGGGGTTCGAATCCTAGCTCACCATTCTCCG
GGGATTTGCCCCCCTTGCGACGTGCTGCTTGTGAGGAATGATGACTCTTG
TATTGAAGAGAGCGTGCGTCACTTTATCCAATCAATGTTCCCAGTTTAAT
CAGAGATGGAGAAAGAACACGAGTGCTGGGGATCGAACCCCCGACATTTC
CTTTGTTGTAGTCACCGACTATGTGGTGTATATGATTAACCCCTACCACG
AACACTCCGTGCACACCTTGCGAAACTGTATGTCATGGAAGATTTCACAG
CGATTTCCCATCTCCGATAAATCCACAACAAGAAGAGAGCCAGCATCGAA
AGGGTGGTGCATTTTGGAAAAGTCTTGTCGAAAGAAGAATACCGTTCGGT
GTAAAACCCTCGTTGCTGTAGGAGCAATCAAGCTCTCAGCAGTCGGCGTG
TTGTTGGGTGTTGTATCATTTCTTCGGCAGAATACAGCAAGAAGAAGTGT
ACGGCTCACTTTTCGTTAGATGGACCTACCCACTACTATGATGCTGTAGA
CTTAGGGCCATTTTAAACATCACGTGATTTGTCCATATTTATGGAAATTT
CCATATTTATGAACATTCCGAGGAGGCGTTTGTCCATATTTTTTCCATAA
ATGTGGAACCGACTTGGGCCCAAAAAAGTGGCCCAAGTCCATTCCAGATT
TATGGAAAGTTTCCATATTTTCCATATTTTCAAATCAGTGTTCAAATCAG
TGTGAATACACAGCAACACGCCCGAGGCCTACACGTAATTGCGAGCTCGT
AGGGCCATCGAAGCAACCGTAGAGCCACCGCGTCACCAGTTCGGTCGCTG
TTAAAGTGGCCGGAGTTGGCCATTTGATTGAGAGAGGCCCCCTTCCTTTG
TTTGAAATGATGATGAGCTGCGGGAGAATAATTTACCACAGCAGCAGTCA
GCTCTTGTGGTTACCTATACACCACCTCTCAACGCGAATGCTTCGTGGCT
ATTACCTCACTATACTGCTCTCTACTAGCAGGGCGTTGCGTCAGAGGTGG
TGTCATTCAATCGGCTGCATCATCAGCATCGCGGCGCATGAGATGTTGTC
TGCTGATGCTGCTGCTGCTGCTGTTTTCACTTTTTCAGTCGGTAGAACAA
GTGGTCTATTTTCAAGTACTAAAAAAGTGGTCAGATTGATCTCTCGATTG
ACATTATCAGCTAGTATATTTTAACAACGAGCGACCCTTCTCTCTCTCTC
GACTGAATAACCCTGTATCCAACCCAACGCCCCACCGACAGAGAACAGTG
AATGGAGACGACCGCCAAGAAGGTTTCACGTTGAGAGATGGTATTGTAGG
GAACGAGAAGATGACGGTGGTGGTAATTGCTGTGTCTGTCCTTCACAACA
CTTGGATGTGTCTTCTTGTTGATCGAACGTACGTCACCTTTCATGCCTTC
TAACGAACTTTTTGGAGGCCATATTTCCATAAATATGGAATCGGTTTTTA
CACGTTTAAAAAGAGCTCTCTCGATTCCATAAATATGATCCATATTTATG
GAAAATTTCCATATTTATGGAATATGTTTAAAACGAGCCTTACTCATACG
CCGGGAGCTCGAATGTCATCAGGTGCTGCGCCTTTTTACGGTAAGATAAA
TTAGATGGTAAACAGATGTTAGGCACAAAACCCACCATAGATGAGCTTAC
TCACAGCAGTGGTATTAGGCGAGGGAGGGGTGAAGGGGTGGAAGACCCGA
GATCCCTCGGAGATTGCCGCGCCTGGTGAGATGGGATCGATTCCCAGAAG
CAAATATCTTGCTCTCTGGATGGACCCATTCACTACATCGTCCTCAGTCA
GCGTGTCCAAAGGTCTCAGTCAGCGGATTTACTACTTGGCCTGGTATGAA
GTCCATCTAACAAACGCACTTCATCCAATCTTCCCCTCGGATTCCCAAAT
TTCAGGCACTGAGAAAAGTATTCGCGAGCTCAGATCGGAAACGGCCTACA
CACCGAACAGTTGCGTCCTTGCATAGCAATATCAGTGACGGTGACAACAG
ACTGGATGGCGATTGGGATCATATGACAAGGACTTCGGCAGCGCAACATT
TGGACAAAAACACGGTCGCTCGGCATTGTTCCACCGACACCGCGGGGGGA
AACCACAATAATCGACAAAAAAACGAAGCAGCATGCAGGATACCGAAAGC
GCCGGGTTATTTAGATGAAGCAACAGAAACGGCAACCGCACCATCATCAT
CGACAAACGAGTCTGCGTGGAACTTCGACAGATTCCTTGAAGAGCAGAGA
CGGAAAGAGGTTCAGCACGATGATCAAAAGGAGAAGATATTCCAGAAGGT
TCGTAATGCGTTCGACACGTAGTCCGAATAAGCGAACATTTTACAGTGTC
CACCTGCAATAATGTGAGGGCGTGTGAGGTTGAGGTCAGAGATTCAGTGT
GGAAAAAAGCTGCTTGTAGACAATCTCAATTTCTTCAACGTGAAGAACGT
TGTATGCATAAGCCTATATCGTCTTGCAGAGGCCTTGGAGTTATACAGAC
GGGATAGAACAATGTAGCTCGATTTTCCAGGGCGTACTTTCGAAGGCATG
GGGGGCGGTTCATCGAAGTAATTCCGTTTGTGACCCCCGTTTGTTTCTAA
AACAAAGCTGGTGATTGGTCTAACCGCAGTCTGATCTCTCCTTCGAAGGT
GTTGTCGGCCCTTGGAAGCAACGCCGAAGCTTCAGGTGCTTTCGAGCTTC
CGCCAGATATCCTCCAGGCGTGGGGGGCGCGAAAGGAAAAAATCGCGGAG
GAAGCAGACGATGCCGAAAAACGCCGGCAGAAACTTGAGGTAGGTCGCAG
GGCTGTTGAAGTTTTGACATTCATCAACGTGCACGGCTTTTTTCTCTAGA
AAAACGTTACGTCATGAAAGCGGGAATAGTACGGAGTACGGTTTGACAAC
GATAAGTGCACGCTAAGTAGCTGCATGCGCCGGGTCCGAGCGCATCTTTC
TCTCCACTCAATTACCAGTTGCTGTTTCAGTCATGAGGTGTTGTGCAAAG
CGTATAACGTCATTGAGAACACTGTGGATGACGATATGACGTTCGACGCT
TATCGAGATCGTTCGTTCGCTTCTCGCTTTCCGGGATTGTCGAAATGTTG
GCTTGTACCCATGCATTGCTAGCTTGCAAGTATCTTGCCAAGAGGCTGAT
CACTAGCGCCACTGGTATCTTCGATGGTTGCAGTGCAGAGTGTGCGAGGT
AAGCTCACGGACATCACCCATCGCACAAACACGTTTGGAGGTCATGGACG
TGCCCAGGTAAAAAACGAATTGGGGGCGGTGGGGGAGGGGAGTGGCAGAA
TATAACCAGCAATATATTCCGGGCTTGATACCGTCGAACGCAGGAGGACC
ACGCTCTTGCTCATCAGCGGCAGTCGTTGAAGCAGCGATACCTTCCGGGG
AGCAATGACAGCGTTGGCGAGGACCCTCTCGCTTCTCTCACCGATACTTA
CTCGCAAGAGGACGAAGAAGGGGAGGGGTCGGGAGGGTTGTGTCATCGCC
AGCTCCTGTGCGAGGAGAAAGAGAAGGAGCAGGGGGAGAGGGATGATTCC
TTCACCCGTCACCAAGCAGTGGCAGAGCCTGTACGGCTTGAGCTGGGAAT
GGACGCGGAAGTGCTTGATGAAATTCTGGATGAAATCGAGGTGATGTTTA
CACACTCCTTTTTCCCTTTTCTGTTGGGTTCGCCCTCTGTTTTTGATTCT
TTGTTGTTCGTCACCTTGTGCGCGGTTGTACACTTGGGTCGTAATCGATA
GCTGTTATTCTGTACAGACTATATGCACGTTGCACTTGCGGAGAGTGTTA
ACTCCTCTTTGCTGACTGCGGGAAAAGGTGATGTGCCCATTAAAAAACAT
CGCCCTTCTCTGAATGCGATGCCGCCGTGAATCTCCTACCTACCTACCCG
CGATTTTCTCTACCAGGAATCTGCCATCGCCGTCGAGACCAACTCCGAGT
TGTCACGAGTACTCGATGAACTTGATAGTGCTGCCGGCGACAAGCCCACT
ACTGCCACCACCAACACGCTCCTCCGTCCGGGTGTACAGGAATGACACAT
AGCAAGAAGTACAGCACGAGTGGTCAGGAGTATGAATAGGTTCCATATGA
ATGCCAATGTATCCATTCCGTAGGTATTTGTCGCTCAACGGCGGCGCTTG
TGGTGATGGTGGGAACGATGATGTCCACTACAGAGGAATAATTATTTTTG
TGCGCACGGCAAATCATTGATGTAGCAGTATTTTCTCGTTTGCCCGCTTT
TTTTGTTACCTTTTGGTGTTACTGCTGCTCATGTGTTGGGAAACATGCCA
AGTTATTTTGCCACGGACAACGTACTTTGCGTGACAGCAGTGTTCTTTGT
GCGGATGGGTCATCTGGTCCCGCACATGTATTCGTCTGGGTAGGTTCGCT
CCTCCCTAAATTTTCCCCCTCCTCAAAAATGAAACGTACATGGCTGGTGT
GTCGACAACTACTTCCAGCGCCCGTCAACTTGGC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig62:315434..321767+ >mRNA_P-littoralis_Contig62.78.1 ID=mRNA_P-littoralis_Contig62.78.1|Name=mRNA_P-littoralis_Contig62.78.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1152bp|location=Sequence derived from alignment at P-littoralis_Contig62:315434..321767+ (Pylaiella littoralis U1_48) ATGAATGGTCTACTCGTAGATCACGAATGCACCACCATGCCGAAGACCTT TTCCTGGACGTTGGACCGAAATGAACTGGTGGGAAAACTCGTCCGTCGGC ATGCCTTCGACTTTGATGCAGTATCACGCACGTTCAGACAGCACTTGAAA TGCGAGGGCGTGGATTTCAATTCCGAATCAACGAGCCCTGCGGCACTGAG AAAAGTATTCGCGAGCTCAGATCGGAAACGGCCTACACACCGAACAGTTG CGTCCTTGCATAGCAATATCAGTGACGGTGACAACAGACTGGATGGCGAT TGGGATCATATGACAAGGACTTCGGCAGCGCAACATTTGGACAAAAACAC GGTCGCTCGGCATTGTTCCACCGACACCGCGGGGGGAAACCACAATAATC GACAAAAAAACGAAGCAGCATGCAGGATACCGAAAGCGCCGGGTTATTTA GATGAAGCAACAGAAACGGCAACCGCACCATCATCATCGACAAACGAGTC TGCGTGGAACTTCGACAGATTCCTTGAAGAGCAGAGACGGAAAGAGGTTC AGCACGATGATCAAAAGGAGAAGATATTCCAGAAGGTGTTGTCGGCCCTT GGAAGCAACGCCGAAGCTTCAGGTGCTTTCGAGCTTCCGCCAGATATCCT CCAGGCGTGGGGGGCGCGAAAGGAAAAAATCGCGGAGGAAGCAGACGATG CCGAAAAACGCCGGCAGAAACTTGAGGAGGACCACGCTCTTGCTCATCAG CGGCAGTCGTTGAAGCAGCGATACCTTCCGGGGAGCAATGACAGCGTTGG CGAGGACCCTCTCGCTTCTCTCACCGATACTTACTCGCAAGAGGACGAAG AAGGGGAGGGGTCGGGAGGGTTGTGTCATCGCCAGCTCCTGTGCGAGGAG AAAGAGAAGGAGCAGGGGGAGAGGGATGATTCCTTCACCCGTCACCAAGC AGTGGCAGAGCCTGTACGGCTTGAGCTGGGAATGGACGCGGAAGTGCTTG ATGAAATTCTGGATGAAATCGAGGAATCTGCCATCGCCGTCGAGACCAAC TCCGAGTTGTCACGAGTACTCGATGAACTTGATAGTGCTGCCGGCGACAA GCCCACTACTGCCACCACCAACACGCTCCTCCGTCCGGGTGTACAGGAAT GA back to top
|