mRNA_P-littoralis_Contig618.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig618.4.1
Unique NamemRNA_P-littoralis_Contig618.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 142 bits (358), Expect = 2.630e-37
Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1
Query:   19 KHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQT-----EFASIAEVQGPQHKRCDGQVRG 447
            ++RSTL+ R+RR +  Y +P+L D +F   FRM +D+F VLVD LRP L+++   G LRNG++PVEYQV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ +       F++ A +     K C G + G
Sbjct:   44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRK-CVGAMDG 190          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 3.660e-37
Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 1
Query:  181 MGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEVQGPQHKRCDGQVRGSHGWAFHPHEEADLSRHPRAQLLLQRPQEGLRDELSG 558
            MG LRNG++PVEYQV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ +    +    +      C  +VRGSHGW   P ++A+     RAQL+LQR QE LR EL G
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 2.940e-36
Identity = 63/121 (52.07%), Postives = 88/121 (72.73%), Query Frame = 1
Query:   16 PKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQ 378
            P+ R   +RR+RRSW  Y++P++ DG+FR  FRM + EF +L DMLRP+LER+  MG LRNG +PVE+Q+   LR+LAGG + ++  G+VIA+STAY    RV+ AIN  +ELDC WP+ +
Sbjct:   39 PQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGE 159          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 6.360e-36
Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 1
Query:   19 KHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPK 372
            ++RSTL+ R+RR +  + +P+L D +F   FRM +D+F VL+D LRP L ++  MG LR G++PVEYQ+  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+
Sbjct:   44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE 161          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 1.360e-33
Identity = 62/137 (45.26%), Postives = 90/137 (65.69%), Query Frame = 1
Query:   16 PKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEVQGPQHKR 426
            P HR   + R+RRS+  Y  P++ D +FR  FRM + +FM L D+LRP+L+R   MG LRNG++PVE+Q+  TLR+LAGG + ++   +VIAKSTAY    RV+ AIN  ++L+C+WP     +   AE Q   ++R
Sbjct:   43 PAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWP-----YGDDAEAQAELYRR 174          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.680e-26
Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1
Query:   25 RSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAY 306
            RSTL+ R RR +  Y +P+L D +F   FRM +D+F VLVD LRP L+++  MG LRNG++PVEYQV  TLRWLAGG  ++   GHVIA+STAY
Sbjct:   46 RSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 1.340e-24
Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 1
Query:  133 MVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEV 405
            +VLVD LRP L+++  MG LRNG++PVE QV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ + + A  AE+
Sbjct:   71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAEL 160          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.230e-20
Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query:  181 MGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEV 405
            MG LRNG++PVE QV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ + + A  AE+
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAEL 74          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6A3QK27_9STRA (DDE Tnp4 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QK27_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.490e-12
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1
Query:   16 PKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQT 381
            P+ R+ L  R +  W      +LA+  F   +RM    F+ L D+L P L RSPH   ++ G + V+  +  TLR+ AGG MHDI++   ++K++ Y+    VV AINA  EL   +P++ T
Sbjct:   19 PRPRAPLTVRVKLKWDRELNLLLAESQFEACYRMPAAAFVQLEDLLAPTLHRSPHAW-VQRGYISVDNALQLTLRYFAGGSMHDIRRVAGVSKASFYRILWLVVDAINAVSELRLVFPRSPT 139          
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.670e-11
Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 2
Query:  404 FRDRSTNGVMVKCVGAMDGLFTRMRRPISRDTHEPNSFYSGHKKGFGMNFQVM 562
            +R RSTN V+  CVGAMDGLF  +  P  R    P  FYSGHKKGFGMNFQ +
Sbjct:  102 YRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JJA1_9PHAE2.630e-3746.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9B3_9PHAE3.660e-3750.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3F2_9PHAE2.940e-3652.07DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE6.360e-3650.85DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K6M2_9PHAE1.360e-3345.26DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K540_9PHAE1.680e-2657.45DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.340e-2453.85DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE1.230e-2054.67Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6A3QK27_9STRA2.490e-1236.07DDE Tnp4 domain-containing protein n=2 Tax=Phytoph... [more]
A0A6H5KCG0_9PHAE8.670e-1160.38DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig618contigP-littoralis_Contig618:9911..10499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_10743T0
Model size589
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.33e-11
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791285.98977-CDS-P-littoralis_Contig618:9911..104991680791285.98977-CDS-P-littoralis_Contig618:9911..10499Pylaiella littoralis U1_48CDSP-littoralis_Contig618 9912..10499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig618.4.1prot_P-littoralis_Contig618.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig618 9912..10499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig618.4.1

>prot_P-littoralis_Contig618.4.1 ID=prot_P-littoralis_Contig618.4.1|Name=mRNA_P-littoralis_Contig618.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp
TKHTRPKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDM
LRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKST
AYQTAARVVKAINACKELDCRWPKNQTEFASIAEVQGPQHKRCDGQVRGS
HGWAFHPHEEADLSRHPRAQLLLQRPQEGLRDELSGNDAFVFGAHC
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mRNA from alignment at P-littoralis_Contig618:9911..10499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig618.4.1 ID=mRNA_P-littoralis_Contig618.4.1|Name=mRNA_P-littoralis_Contig618.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=589bp|location=Sequence derived from alignment at P-littoralis_Contig618:9911..10499- (Pylaiella littoralis U1_48)
ACGAAGCACACCAGACCGAAGCACCGCAGCACGCTGATCCGGCGTGACCG GCGAAGTTGGGCTGTATACAGCGAGCCCATATTGGCAGACGGGAGCTTTA GACCGAGTTTCCGCATGGGCCACGACGAGTTCATGGTTCTGGTGGATATG CTTCGCCCCGAACTGGAAAGAAGCCCTCACATGGGCCGCCTCCGCAATGG CTCTCTCCCAGTAGAGTACCAGGTCGGAAATACTCTGCGATGGTTGGCGG GCGGTGAAATGCACGACATAAAGCAAGGCCACGTGATCGCCAAGAGTACG GCGTATCAGACAGCAGCCCGCGTCGTGAAGGCCATCAATGCCTGCAAGGA ATTGGATTGCCGGTGGCCCAAGAACCAGACGGAGTTCGCCAGCATCGCGG AGGTTCAGGGACCGCAGCACAAACGGTGTGATGGTCAAGTGCGTGGGAGC CATGGATGGGCTTTTCACCCGCATGAGGAGGCCGATCTCTCGCGACACCC ACGAGCCCAACTCCTTCTACAGCGGCCACAAGAAGGGCTTCGGGATGAAC TTTCAGGTAATGATGCTTTCGTTTTCGGAGCTCACTGTA
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Coding sequence (CDS) from alignment at P-littoralis_Contig618:9911..10499-

>mRNA_P-littoralis_Contig618.4.1 ID=mRNA_P-littoralis_Contig618.4.1|Name=mRNA_P-littoralis_Contig618.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig618:9911..10499- (Pylaiella littoralis U1_48)
ACGAAGCACACCAGACCGAAGCACCGCAGCACGCTGATCCGGCGTGACCG
GCGAAGTTGGGCTGTATACAGCGAGCCCATATTGGCAGACGGGAGCTTTA
GACCGAGTTTCCGCATGGGCCACGACGAGTTCATGGTTCTGGTGGATATG
CTTCGCCCCGAACTGGAAAGAAGCCCTCACATGGGCCGCCTCCGCAATGG
CTCTCTCCCAGTAGAGTACCAGGTCGGAAATACTCTGCGATGGTTGGCGG
GCGGTGAAATGCACGACATAAAGCAAGGCCACGTGATCGCCAAGAGTACG
GCGTATCAGACAGCAGCCCGCGTCGTGAAGGCCATCAATGCCTGCAAGGA
ATTGGATTGCCGGTGGCCCAAGAACCAGACGGAGTTCGCCAGCATCGCGG
AGGTTCAGGGACCGCAGCACAAACGGTGTGATGGTCAAGTGCGTGGGAGC
CATGGATGGGCTTTTCACCCGCATGAGGAGGCCGATCTCTCGCGACACCC
ACGAGCCCAACTCCTTCTACAGCGGCCACAAGAAGGGCTTCGGGATGAAC
TTTCAGGTAATGATGCTTTCGTTTTCGGAGCTCACTGT
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