mRNA_P-littoralis_Contig618.4.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 142 bits (358), Expect = 2.630e-37 Identity = 69/148 (46.62%), Postives = 99/148 (66.89%), Query Frame = 1
Query: 19 KHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQT-----EFASIAEVQGPQHKRCDGQVRG 447
++RSTL+ R+RR + Y +P+L D +F FRM +D+F VLVD LRP L+++ G LRNG++PVEYQV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + F++ A + K C G + G
Sbjct: 44 RNRSTLVARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRK-CVGAMDG 190
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 134 bits (338), Expect = 3.660e-37 Identity = 63/126 (50.00%), Postives = 83/126 (65.87%), Query Frame = 1
Query: 181 MGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEVQGPQHKRCDGQVRGSHGWAFHPHEEADLSRHPRAQLLLQRPQEGLRDELSG 558
MG LRNG++PVEYQV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + + + C +VRGSHGW P ++A+ RAQL+LQR QE LR EL G
Sbjct: 1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAAGAAELFRNRSSYGCRPEVRGSHGWLVCPDDQAEREGGRRAQLMLQRAQERLRHELPG 126
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 140 bits (352), Expect = 2.940e-36 Identity = 63/121 (52.07%), Postives = 88/121 (72.73%), Query Frame = 1
Query: 16 PKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQ 378
P+ R +RR+RRSW Y++P++ DG+FR FRM + EF +L DMLRP+LER+ MG LRNG +PVE+Q+ LR+LAGG + ++ G+VIA+STAY RV+ AIN +ELDC WP+ +
Sbjct: 39 PQTRDKFVRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGE 159
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 137 bits (345), Expect = 6.360e-36 Identity = 60/118 (50.85%), Postives = 87/118 (73.73%), Query Frame = 1
Query: 19 KHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPK 372
++RSTL+ R+RR + + +P+L D +F FRM +D+F VL+D LRP L ++ MG LR G++PVEYQ+ TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+
Sbjct: 44 RNRSTLVARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPE 161
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 133 bits (334), Expect = 1.360e-33 Identity = 62/137 (45.26%), Postives = 90/137 (65.69%), Query Frame = 1
Query: 16 PKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEVQGPQHKR 426
P HR + R+RRS+ Y P++ D +FR FRM + +FM L D+LRP+L+R MG LRNG++PVE+Q+ TLR+LAGG + ++ +VIAKSTAY RV+ AIN ++L+C+WP + AE Q ++R
Sbjct: 43 PAHRGNFVYRERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWP-----YGDDAEAQAELYRR 174
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 112 bits (281), Expect = 1.680e-26 Identity = 54/94 (57.45%), Postives = 69/94 (73.40%), Query Frame = 1
Query: 25 RSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAY 306
RSTL+ R RR + Y +P+L D +F FRM +D+F VLVD LRP L+++ MG LRNG++PVEYQV TLRWLAGG ++ GHVIA+STAY
Sbjct: 46 RSTLVARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY 139
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 108 bits (271), Expect = 1.340e-24 Identity = 49/91 (53.85%), Postives = 68/91 (74.73%), Query Frame = 1
Query: 133 MVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEV 405
+VLVD LRP L+++ MG LRNG++PVE QV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + + A AE+
Sbjct: 71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAEL 160
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 92.4 bits (228), Expect = 1.230e-20 Identity = 41/75 (54.67%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 181 MGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQTEFASIAEV 405
MG LRNG++PVE QV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + + A AE+
Sbjct: 1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAEL 74
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6A3QK27_9STRA (DDE Tnp4 domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3QK27_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 2.490e-12 Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 1
Query: 16 PKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERSPHMGRLRNGSLPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVVKAINACKELDCRWPKNQT 381
P+ R+ L R + W +LA+ F +RM F+ L D+L P L RSPH ++ G + V+ + TLR+ AGG MHDI++ ++K++ Y+ VV AINA EL +P++ T
Sbjct: 19 PRPRAPLTVRVKLKWDRELNLLLAESQFEACYRMPAAAFVQLEDLLAPTLHRSPHAW-VQRGYISVDNALQLTLRYFAGGSMHDIRRVAGVSKASFYRILWLVVDAINAVSELRLVFPRSPT 139
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 70.1 bits (170), Expect = 8.670e-11 Identity = 32/53 (60.38%), Postives = 36/53 (67.92%), Query Frame = 2
Query: 404 FRDRSTNGVMVKCVGAMDGLFTRMRRPISRDTHEPNSFYSGHKKGFGMNFQVM 562
+R RSTN V+ CVGAMDGLF + P R P FYSGHKKGFGMNFQ +
Sbjct: 102 YRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig618.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig618.4.1 >prot_P-littoralis_Contig618.4.1 ID=prot_P-littoralis_Contig618.4.1|Name=mRNA_P-littoralis_Contig618.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=196bp TKHTRPKHRSTLIRRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMback to top mRNA from alignment at P-littoralis_Contig618:9911..10499- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig618.4.1 ID=mRNA_P-littoralis_Contig618.4.1|Name=mRNA_P-littoralis_Contig618.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=589bp|location=Sequence derived from alignment at P-littoralis_Contig618:9911..10499- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig618:9911..10499- >mRNA_P-littoralis_Contig618.4.1 ID=mRNA_P-littoralis_Contig618.4.1|Name=mRNA_P-littoralis_Contig618.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=588bp|location=Sequence derived from alignment at P-littoralis_Contig618:9911..10499- (Pylaiella littoralis U1_48)back to top |