mRNA_P-littoralis_Contig616.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig616.30.1
Unique NamemRNA_P-littoralis_Contig616.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 7.520e-26
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPTGRCQPRVMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNPTCTVAF 240
            T  +TFH FC++F  E+YDE++ LPTG    +VM +Y+RIGFPG++GS ++TH+ WGMC YNQAR  TGK+G PT  VAF
Sbjct:  110 TVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPT--VAF 187          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.570e-25
Identity = 46/80 (57.50%), Postives = 61/80 (76.25%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPTGRCQPRVMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNPTCTVAF 240
            T  +TFH FC++F  E+YDE++ LPTG    +VM +Y+RIGFPG++GS ++TH+ WGMC YNQAR  TGK+G PT  VAF
Sbjct:  201 TVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPT--VAF 278          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 1.890e-24
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPTGRCQPRVMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNPT 225
            TA ATFH F  +F REMY EHI LPTG  Q +VM +Y+R+GF G+ GS ++TH+ WGMC YNQAR  TGK+G PT
Sbjct:  185 TAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPT 259          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.540e-23
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPT---GRCQPRVMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNPT 225
            T Q  FH FCEHF  EMYDEHI LP+   G    RVMG+YE++GFPG++GS ++TH+ W  C YNQ R  TGK+G PT
Sbjct:  154 TVQKVFHQFCEHFATEMYDEHIFLPSEENGELD-RVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPT 230          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5L642_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L642_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.170e-21
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPTGRCQP--RVMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNPT 225
            T QA FH FC+HF REMYDEHI LP+ +      VM +Y+R+GF G++GS ++TH+ W  C YN AR  TGK+G PT
Sbjct:  152 TVQAMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPT 228          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.260e-20
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPTGRCQP--RVMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNPT 225
            T Q  FH FC+HF REMYDEHI LP+ +      VM +Y+R+GF G++GS ++TH+ W  C YN AR  TGK+G PT
Sbjct:  125 TVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPT 201          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI)

HSP 1 Score: 91.3 bits (225), Expect = 7.010e-20
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPTGRCQP--RVMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNPT 225
            T QA FH FC+HF REMYDEHI LP+ +      VM +Y+R+GF G++GS ++TH+ W  C YN  R  TGK+G PT
Sbjct:  152 TVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPT 228          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5KFR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFR8_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 9.420e-8
Identity = 23/42 (54.76%), Postives = 31/42 (73.81%), Query Frame = 1
Query:   97 VMGKYERIGFPGSIGSANLTHLAWGMCLYNQARYCTGKDGNP 222
            VM +Y+R+GF GS+GS ++TH+ W  C YN AR  TGK+G P
Sbjct:  195 VMEQYDRLGFSGSMGSMDVTHIGWSKCPYNLARSYTGKEGVP 236          
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Match: A0A6H5JBL1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL1_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 3.550e-5
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 TAQATFHSFCEHFVREMYDEHICLPTGRCQP--RVMGKYERIGFPGSIGSANLT 156
            T Q  FH F +HF REMYDEHI LP+ +      VM + +R+GF G++ S  +T
Sbjct:  184 TVQTMFHKFRKHFAREMYDEHIYLPSEQNGELDHVMEQCDRLGFLGAMSSMGVT 237          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig616.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE7.520e-2657.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE1.570e-2557.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE1.890e-2461.33Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.540e-2357.69Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L642_9PHAE1.170e-2154.55Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JHI0_9PHAE3.260e-2053.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FPI7_ECTSI7.010e-2053.25Transposon protein, putative, Pong sub-class n=1 T... [more]
A0A6H5KFR8_9PHAE9.420e-854.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL1_9PHAE3.550e-546.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig616contigP-littoralis_Contig616:150486..150728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size243
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.75e-14
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size243
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791284.3695998-CDS-P-littoralis_Contig616:150485..1507281680791284.3695998-CDS-P-littoralis_Contig616:150485..150728Pylaiella littoralis U1_48CDSP-littoralis_Contig616 150486..150728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig616.30.1prot_P-littoralis_Contig616.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig616 150486..150728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig616.30.1

>prot_P-littoralis_Contig616.30.1 ID=prot_P-littoralis_Contig616.30.1|Name=mRNA_P-littoralis_Contig616.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=81bp
TAQATFHSFCEHFVREMYDEHICLPTGRCQPRVMGKYERIGFPGSIGSAN
LTHLAWGMCLYNQARYCTGKDGNPTCTVAF*
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mRNA from alignment at P-littoralis_Contig616:150486..150728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig616.30.1 ID=mRNA_P-littoralis_Contig616.30.1|Name=mRNA_P-littoralis_Contig616.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig616:150486..150728+ (Pylaiella littoralis U1_48)
ACAGCTCAGGCAACCTTCCACAGCTTCTGCGAGCACTTTGTCAGAGAGAT GTACGACGAGCACATCTGCCTACCAACCGGAAGATGTCAGCCGAGGGTCA TGGGCAAGTATGAGCGCATTGGCTTTCCAGGCTCGATTGGGTCTGCAAAT TTGACCCACCTCGCATGGGGCATGTGCCTCTACAACCAAGCCCGTTATTG CACGGGTAAAGATGGGAACCCTACCTGTACCGTCGCATTTTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig616:150486..150728+

>mRNA_P-littoralis_Contig616.30.1 ID=mRNA_P-littoralis_Contig616.30.1|Name=mRNA_P-littoralis_Contig616.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=243bp|location=Sequence derived from alignment at P-littoralis_Contig616:150486..150728+ (Pylaiella littoralis U1_48)
ACAGCTCAGGCAACCTTCCACAGCTTCTGCGAGCACTTTGTCAGAGAGAT
GTACGACGAGCACATCTGCCTACCAACCGGAAGATGTCAGCCGAGGGTCA
TGGGCAAGTATGAGCGCATTGGCTTTCCAGGCTCGATTGGGTCTGCAAAT
TTGACCCACCTCGCATGGGGCATGTGCCTCTACAACCAAGCCCGTTATTG
CACGGGTAAAGATGGGAACCCTACCTGTACCGTCGCATTTTAA
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