mRNA_P-littoralis_Contig612.21.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig612.21.1
Unique NamemRNA_P-littoralis_Contig612.21.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig612.21.1 vs. uniprot
Match: D8LBW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBW8_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 1.990e-11
Identity = 46/84 (54.76%), Postives = 53/84 (63.10%), Query Frame = 1 
Query:   55 CGYLAPLGCVARPMLASCRTRLLRRPQACAVRRLGSPIAIPSP-------VSLVIFHRHGDRSPLRGHTPDEELALK-APAPAA 282
            CG+L PL  V  PM A   TRLLR   A   R +G P+   +        +SL++FHRHGDRSPLRGHTPDEELAL  A APAA
Sbjct:   11 CGHLTPLSYV-HPMFAPQSTRLLRGLHA---RGVGRPLCSKASGSETQGLLSLLVFHRHGDRSPLRGHTPDEELALPTAAAPAA 90
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig612.21.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBW8_ECTSI1.990e-1154.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig612contigP-littoralis_Contig612:101034..102203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBW8
Preferred nameMBAP2
PFAMsHis_Phos_2
Model size369
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons2
Evalue3.27e-12
EggNOG OGsKOG3720@1|root,KOG3720@2759|Eukaryota
Descriptionacid phosphatase activity
Cds size342
COG categoryK
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791277.0441372-CDS-P-littoralis_Contig612:101033..1012231680791277.0441372-CDS-P-littoralis_Contig612:101033..101223Pylaiella littoralis U1_48CDSP-littoralis_Contig612 101034..101223 -
1680791277.05878-CDS-P-littoralis_Contig612:102024..1021761680791277.05878-CDS-P-littoralis_Contig612:102024..102176Pylaiella littoralis U1_48CDSP-littoralis_Contig612 102025..102176 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791277.0770404-UTR-P-littoralis_Contig612:102176..1022031680791277.0770404-UTR-P-littoralis_Contig612:102176..102203Pylaiella littoralis U1_48UTRP-littoralis_Contig612 102177..102203 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig612.21.1prot_P-littoralis_Contig612.21.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig612 101034..102176 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig612.21.1

>prot_P-littoralis_Contig612.21.1 ID=prot_P-littoralis_Contig612.21.1|Name=mRNA_P-littoralis_Contig612.21.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MKMFPALGRCGYLAPLGCVARPMLASCRTRLLRRPQACAVRRLGSPIAIP
SPVSLVIFHRHGDRSPLRGHTPDEELALKAPAPAASAALAEEAAAGGSAR
ASGAFGRASGAAGG
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mRNA from alignment at P-littoralis_Contig612:101034..102203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig612.21.1 ID=mRNA_P-littoralis_Contig612.21.1|Name=mRNA_P-littoralis_Contig612.21.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1170bp|location=Sequence derived from alignment at P-littoralis_Contig612:101034..102203- (Pylaiella littoralis U1_48)
CAGCAACGAGACCAGACGCGTCCACAGATGAAAATGTTTCCAGCTCTCGG
TCGGTGCGGCTACCTGGCCCCACTGGGCTGCGTTGCGCGTCCTATGCTTG
CATCTTGCAGAACGCGCTTATTGCGCCGGCCGCAAGCGTGTGCTGTGCGG
CGCTTGGGATCTCCCATCGCAATACCAAGGTGGAGTCCGTTGTGAAACCC
AACGCTTGTAAGAACAACGATGAACTGCTGCACGTAATACGTCGCAGCTC
TCCCCGCCCACATGGTACTTACTACCGTGCGAGTGTCGTTGCTTCGCGTT
GATGGGAAAGGCTACTTGGCACCCACTGCCCACCACTTAGGCATGTCACA
AGGTGGGATACCGGCTAGCGGCAGCGAAGTTGTTGGCATACAGTATTATG
CGACCGAATTGCGTTTGTCGTCAACTTCCATTGGGGTTTGACCCACACCT
AGAGCAGAAGATATCATGTGATATGATACGATGAACTGCTGTCTGTATTA
ATGAGCTCCAAGCAACACCGCCTAGGTGCTCACTCGCTGTTTCAGGCTTA
ACTTGTGTGTTGATTTGGCTCAAATCGTGTTGCAGTAGATGAAGCCGTGG
GCATCTAGTCCACACCACAAGCGGTGCACCAGACAGCAGTAGTAGTGTTG
TACCGAATAACGAGACCATGCCCGGACTTCTTCACCACCTAGAGCACGTA
CTCACGCCTAGGCATCGGGATAAACAGATGGTTGCCTCGCTTTGGACCGG
AGAGGGACTGCTGCTGTATGGAGAGCCTCCGCACCACACGCCGCACCGAA
AAAGCGAATAAACCTGCTGTGGCAGACTCTTGGAGTCTCTCGCTTGATCG
CCGATGGGGTTCCTATAAGTCACTTCAGCATCAAACGAGCCCCCGGTGAT
GCCTTCCTTCTCGGCAATGAAGTCCCATCTTACTTCGTTTCACTCCCTCA
CGGTCGTCCCTCCCTTTCTTCCTCGAGCAGTCCCGTGTCGCTGGTCATTT
TCCACCGACACGGCGACAGGTCGCCACTGAGGGGACACACGCCAGACGAA
GAGCTGGCTCTAAAAGCACCAGCACCAGCAGCATCAGCAGCGCTAGCAGA
AGAGGCGGCGGCAGGCGGTAGTGCCAGGGCCAGTGGTGCCTTTGGTAGGG
CTAGTGGTGCCGCCGGTGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig612:101034..102203-

>mRNA_P-littoralis_Contig612.21.1 ID=mRNA_P-littoralis_Contig612.21.1|Name=mRNA_P-littoralis_Contig612.21.1|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig612:101034..102203- (Pylaiella littoralis U1_48)
ATGAAAATGTTTCCAGCTCTCGGTCGGTGCGGCTACCTGGCCCCACTGGG
CTGCGTTGCGCGTCCTATGCTTGCATCTTGCAGAACGCGCTTATTGCGCC
GGCCGCAAGCGTGTGCTGTGCGGCGCTTGGGATCTCCCATCGCAATACCA
AGTCCCGTGTCGCTGGTCATTTTCCACCGACACGGCGACAGGTCGCCACT
GAGGGGACACACGCCAGACGAAGAGCTGGCTCTAAAAGCACCAGCACCAG
CAGCATCAGCAGCGCTAGCAGAAGAGGCGGCGGCAGGCGGTAGTGCCAGG
GCCAGTGGTGCCTTTGGTAGGGCTAGTGGTGCCGCCGGTGGG
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