prot_P-littoralis_Contig611.30.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig611.30.1
Unique Nameprot_P-littoralis_Contig611.30.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length228
Homology
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BLAST of mRNA_P-littoralis_Contig611.30.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.220e-14
Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 0 
Query:   31 LLTKFAAKHFANERQKSQGMHVVRCGNGLFVVKKHTANGWRGNKTEMVFPSEGQEAKIICSCAYPARWGLLCQHGFAVLRDQDKMHQAMAYIDNDYLAERYRALYTDPDYCVVPPIPSLLEEDPLLLPAADVKGKGGRPKKGPRKRARVQVNGEFHSSAR 190
            L+T FA K +  E   +  + V   G   ++V     N +  N+  + +  +       C+C +  R+ + C+H  AV +  +  ++ +  I   Y    YRA   D  Y ++PP+   L  +P   P  +V+G  GRPK GPRK+ R+Q NGE ++S+R
Sbjct:  442 LVTPFATKTWEAEFVLADSLSVSPVGGDQYMVYPQQ-NSFLSNRVNLTWGDDADGHHYDCTCDFCPRFKIPCRHVIAVAKSTETANRGLELISKGYSLATYRAAANDSRYRIIPPVWDDLTVNPQHRPPLEVEGAAGRPKSGPRKKKRIQSNGEMNTSSR 600
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig611.30.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4I0_9PHAE1.220e-1429.38SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 198..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 207..227
IPR007527Zinc finger, SWIM-typePROSITEPS50966ZF_SWIMcoord: 75..113
score: 8.9263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig611contigP-littoralis_Contig611:148643..151095 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig611.30.1mRNA_P-littoralis_Contig611.30.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig611 148636..151231 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig611.30.1 ID=prot_P-littoralis_Contig611.30.1|Name=mRNA_P-littoralis_Contig611.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MAPPLMAFNLVERIATVFAERGKHLEGSAQLLTKFAAKHFANERQKSQGM
HVVRCGNGLFVVKKHTANGWRGNKTEMVFPSEGQEAKIICSCAYPARWGL
LCQHGFAVLRDQDKMHQAMAYIDNDYLAERYRALYTDPDYCVVPPIPSLL
EEDPLLLPAADVKGKGGRPKKGPRKRARVQVNGEFHSSARHCMRVERLMT
SDGAGAGASGSGLSQSGLSQSTPVDIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007527Znf_SWIM