mRNA_P-littoralis_Contig611.30.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig611.30.1
Unique NamemRNA_P-littoralis_Contig611.30.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig611.30.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.410e-14
Identity = 47/160 (29.38%), Postives = 79/160 (49.38%), Query Frame = 2 
Query:   98 LLTKFAAKHFANERQKSQGMHVVRCGNGLFVVKKHTANGWRGNKTEMVFPSEGQEAKIICSCAYPARWGLLCQHGFAVLRDQDKMHQAMAYIDNDYLAERYRALYTDPDYCVVPPIPSLLEEDPLLLPAADVKGKGGRPKKGPRKRARVQVNGEFHSSAR 577
            L+T FA K +  E   +  + V   G   ++V     N +  N+  + +  +       C+C +  R+ + C+H  AV +  +  ++ +  I   Y    YRA   D  Y ++PP+   L  +P   P  +V+G  GRPK GPRK+ R+Q NGE ++S+R
Sbjct:  442 LVTPFATKTWEAEFVLADSLSVSPVGGDQYMVYPQQ-NSFLSNRVNLTWGDDADGHHYDCTCDFCPRFKIPCRHVIAVAKSTETANRGLELISKGYSLATYRAAANDSRYRIIPPVWDDLTVNPQHRPPLEVEGAAGRPKSGPRKKKRIQSNGEMNTSSR 600
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig611.30.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4I0_9PHAE3.410e-1429.38SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig611contigP-littoralis_Contig611:148636..151231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size827
Hectar predicted targeting categoryother localisation
Exons3
Cds size684
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.7935188-UTR-P-littoralis_Contig611:148635..1486421680791275.7935188-UTR-P-littoralis_Contig611:148635..148642Pylaiella littoralis U1_48UTRP-littoralis_Contig611 148636..148642 +
1680791275.8407214-UTR-P-littoralis_Contig611:151095..1512311680791275.8407214-UTR-P-littoralis_Contig611:151095..151231Pylaiella littoralis U1_48UTRP-littoralis_Contig611 151096..151231 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791275.8052094-CDS-P-littoralis_Contig611:148642..1487881680791275.8052094-CDS-P-littoralis_Contig611:148642..148788Pylaiella littoralis U1_48CDSP-littoralis_Contig611 148643..148788 +
1680791275.8158941-CDS-P-littoralis_Contig611:149174..1493591680791275.8158941-CDS-P-littoralis_Contig611:149174..149359Pylaiella littoralis U1_48CDSP-littoralis_Contig611 149175..149359 +
1680791275.8275952-CDS-P-littoralis_Contig611:150742..1510951680791275.8275952-CDS-P-littoralis_Contig611:150742..151095Pylaiella littoralis U1_48CDSP-littoralis_Contig611 150743..151095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig611.30.1prot_P-littoralis_Contig611.30.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig611 148643..151095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig611.30.1

>prot_P-littoralis_Contig611.30.1 ID=prot_P-littoralis_Contig611.30.1|Name=mRNA_P-littoralis_Contig611.30.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=228bp
MAPPLMAFNLVERIATVFAERGKHLEGSAQLLTKFAAKHFANERQKSQGM
HVVRCGNGLFVVKKHTANGWRGNKTEMVFPSEGQEAKIICSCAYPARWGL
LCQHGFAVLRDQDKMHQAMAYIDNDYLAERYRALYTDPDYCVVPPIPSLL
EEDPLLLPAADVKGKGGRPKKGPRKRARVQVNGEFHSSARHCMRVERLMT
SDGAGAGASGSGLSQSGLSQSTPVDIS*
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mRNA from alignment at P-littoralis_Contig611:148636..151231+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig611.30.1 ID=mRNA_P-littoralis_Contig611.30.1|Name=mRNA_P-littoralis_Contig611.30.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2596bp|location=Sequence derived from alignment at P-littoralis_Contig611:148636..151231+ (Pylaiella littoralis U1_48)
AAGGAGTATGGCTCCTCCGCTCATGGCTTTCAACCTGGTGGAGAGGATCG
CCACCGTCTTTGCCGAACGGGGCAAGCACCTGGAAGGCTCCGCCCAACTC
CTCACCAAGTTCGCTGCCAAGCACTTTGCCAACGAGAGGCAGAAGTCGCA
GGGGTAAGCTTGTTTGGTCATGTTTTCCTGTCCAGTGTTTGTTGCAGATG
CCGTCGATCTTGCTCCTTTTTTTGTTGTTTTCTAGCCGTACACAAGGTTG
GTTCGGTTTTCAATGTCAAAGGGAAGAAGGACTTGAGGTTACACGGGTTG
GCGTTGGGTTTAGTCCTCGTTAGGACTACGAGACTAGGTTGGCCATTTCG
TCTTCATCTATAGATGAGCGCGTCGCGGTCTACTCTATTCGCACGGATTG
ATGGCATGCTTCACCGAATGCCCTGGACGTAACAGGCACCACCAAAACAA
ATGTGTGCGGCAGTTGCTCGCTTTGGTTGCGGTGGCCTCTTCCATTGACT
TGCTTGTCGCTTGTTTATTCCGACATGCATGCCTGACAGGATGCATGTTG
TCCGATGCGGTAACGGACTGTTCGTCGTCAAGAAGCACACCGCGAATGGA
TGGCGCGGAAACAAAACAGAGATGGTTTTCCCGTCTGAGGGACAGGAGGC
GAAGATCATCTGCAGCTGCGCATACCCGGCTAGGTGGGGCCTCCTCTGCC
AACACGGGTTCGCTGTCCTGAGAGGTACGCGCTTTCGTGTGTTGTGGTGT
GTAATGATTGTGGGCAATTGCCGTTTATATTCACCAAGTTGGTGTTAAAC
GTAGAGCGTTCTGTGGTTTTGCTGTGGGTATGCTCCCTCTTTTTTAGTTG
GTTTTAGTTGGCTCCCCTTTGTATTCCACTGCTGTATTGTGGTATTTTGG
TTTGAGGGCCCTTTCTGTTTGGCTGTTTGGTACGGCTGTTGACACGATAC
CGCCCCTACTGTTTTAACCCTTCTCTGTGACTACCCAGTGATTTTTGCAA
CACAAAATTTAAAATTCCCTTTAAAATTGGCCCTTTAAAATTGGAAATTT
ATCATCGTTTTTTTTGTAACCGGTCCATTCGGGCTTGAGACAAAAATTCC
CATCTCGAACCACAGCGAAGGAGAGAAGTTGTTTTTTGTTTTTCCCCTTG
TTTTTTGGTTTTTTGCACGATGAATGAATACAGCAGTGATCACATGGCAA
CACACACGCTGCGTTTGTATCATGCACACATAGGGGGCTGCTGTCCAGTC
AGTGGCTCACATACAGCAGCAGCAGTGGCAGCAGCAACAGAAACAACTCG
TTCGGCGGGGCACGCTGAAAGTAGTTTTGCACACCAAAATTGATGGGTCA
TCATCTCATCATCATGCATGGCGGCGGTGCTGCTGCGTTGCATCTCCTCT
CTCGCCTCGCACACACATCGTACACTACAAACAACCACCTACCACCTTGC
ACGGTCAGCCACCACACGTGCAGCAGCAGCATTAGTTCACGTATAGGAGC
TAGCACAGCAGCAGCATAGCACATACATACACATAAATGTTGTCACATAG
TCGCGGGAACGAACTACTGTGAAACTGAGTACACACAGCAGCAGCAGCAG
TCAGTGTGTGTCTGGTGCATGCAGCTCAGCAGCAGCAGTATACTAGAGCC
CATTTTATACCGCTGGTGAATAAATAAAAACAGAAGTGCATGTCGTCGTA
GTGCTTCCTTCCAATAGCTCGTTATCATTTTGGAGGTTTTGTCGTCATTT
GTAAGCTCAACTCTAGAACTGCGATGGGGCTTTTTCTTGATGAATGGCGA
GGGCGTGAGAAGTACACTTTTGGTTTGTTTCGTCCAGCTGCGCATTTTTG
TCTCCCTCTCTCGTGTTCTCGGGGGCATATTTTCTGGTTCTAATTTGGAA
TCCGGGTATCGCATGGAAAGTCCCAGAACGGTTAACGGCAGACTCGAGCG
TAGCAAGTTGGAACCTTTTTGAATTTTTGAACCCCCTCATAATTAATTAG
TTGATAACCGTTACAAGGGCCTTGACACTTTACGAACGGCTTACCGAACC
TATGCCCCCCCATGTTACCACCGTCGCATCCGCCCTATTCCCCTTCGGTT
TCATCAGACCAGGATAAAATGCATCAGGCGATGGCTTACATCGACAACGA
CTACCTCGCGGAGCGCTACCGTGCTCTCTACACAGACCCGGACTACTGCG
TGGTACCGCCGATCCCCTCCCTTCTGGAGGAGGACCCGCTCCTCCTTCCG
GCAGCCGACGTCAAGGGCAAGGGTGGCCGGCCCAAGAAGGGGCCCAGGAA
GAGGGCAAGGGTCCAGGTCAATGGAGAGTTCCACAGCTCGGCACGCCACT
GCATGCGTGTGGAACGCCTGATGACTTCGGACGGTGCGGGGGCAGGCGCG
TCTGGCAGCGGGCTGTCGCAAAGCGGACTGTCGCAGAGTACGCCTGTTGA
CATTAGCTGATTTTCAGCCCATTTGCATCACTTGGTACGCAACGCAGGCA
ATCGATGGATGCATTTATATCGGGTCGTATCATATGAGGCAGGGTTGCTG
AGTATTAATCGAGCAGTACATATATTTGGTTTAGTGATCGCACACA
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Coding sequence (CDS) from alignment at P-littoralis_Contig611:148636..151231+

>mRNA_P-littoralis_Contig611.30.1 ID=mRNA_P-littoralis_Contig611.30.1|Name=mRNA_P-littoralis_Contig611.30.1|organism=Pylaiella littoralis U1_48|type=CDS|length=684bp|location=Sequence derived from alignment at P-littoralis_Contig611:148636..151231+ (Pylaiella littoralis U1_48)
ATGGCTCCTCCGCTCATGGCTTTCAACCTGGTGGAGAGGATCGCCACCGT
CTTTGCCGAACGGGGCAAGCACCTGGAAGGCTCCGCCCAACTCCTCACCA
AGTTCGCTGCCAAGCACTTTGCCAACGAGAGGCAGAAGTCGCAGGGGATG
CATGTTGTCCGATGCGGTAACGGACTGTTCGTCGTCAAGAAGCACACCGC
GAATGGATGGCGCGGAAACAAAACAGAGATGGTTTTCCCGTCTGAGGGAC
AGGAGGCGAAGATCATCTGCAGCTGCGCATACCCGGCTAGGTGGGGCCTC
CTCTGCCAACACGGGTTCGCTGTCCTGAGAGACCAGGATAAAATGCATCA
GGCGATGGCTTACATCGACAACGACTACCTCGCGGAGCGCTACCGTGCTC
TCTACACAGACCCGGACTACTGCGTGGTACCGCCGATCCCCTCCCTTCTG
GAGGAGGACCCGCTCCTCCTTCCGGCAGCCGACGTCAAGGGCAAGGGTGG
CCGGCCCAAGAAGGGGCCCAGGAAGAGGGCAAGGGTCCAGGTCAATGGAG
AGTTCCACAGCTCGGCACGCCACTGCATGCGTGTGGAACGCCTGATGACT
TCGGACGGTGCGGGGGCAGGCGCGTCTGGCAGCGGGCTGTCGCAAAGCGG
ACTGTCGCAGAGTACGCCTGTTGACATTAGCTGA
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