mRNA_P-littoralis_Contig601.16.5 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig601.16.5
Unique Name	mRNA_P-littoralis_Contig601.16.5
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 5.160e-75
Identity = 138/162 (85.19%), Postives = 140/162 (86.42%), Query Frame = 1

Query:   88 RDRGRGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPPRRRSRSYS 573
            RDRGRGGYGRD+SR RD        SG PGKVSLLVRNLTFRTRVDDVKRIF DFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHA+DRLDGYNLDGRNISVLYAQEKRKRPDEMVHKER EG     RG S    RGYSGYAARRSRSPPRRRSRSYS
Sbjct:    3 RDRGRGGYGRDDSRGRDXXXXXXXXSG-PGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGDYGRGRSXXXXRGYSGYAARRSRSPPRRRSRSYS 163

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 9.280e-32
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 1

Query:  172 PGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKE 453
            P  VSLLVRN+++RTR +D++ IF+ +GD+RDVYLP+D+ +++PRGFAFVEFYD  DAA AKD LD Y LD R I+V++AQ++RKRP+EM H E
Sbjct:   25 PDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSKEPRGFAFVEFYDGRDAADAKDALDRYALDNRQIAVVFAQQRRKRPEEMAHTE 118

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.620e-28
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 1

Query:  166 GVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEM 441
            G     SLLVRNL++R R D+++RIF  +GD+RDVY+P D+ TQ+PRGFAFVEFYD  DAA A D LD Y +DGR I+V++A+++RK  DEM
Sbjct:   40 GPEATTSLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQRPRGFAFVEFYDRRDAADALDHLDRYEMDGREIAVVFAKDRRKTADEM 131

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A7S2BL32_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL32_9STRA)

HSP 1 Score: 118 bits (296), Expect = 7.140e-27
Identity = 55/108 (50.93%), Postives = 80/108 (74.07%), Query Frame = 1

Query:  142 GGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREG 465
            G DR R +G  G+VSLLVRN+++  R +D+   F ++G++RDVY+P+D+ +QKPRGFAFVEFY+P DA  A+ +LD  ++ GR I V++AQ +RKRP+EM   +R  G
Sbjct:   14 GSDRDRPAGEDGQVSLLVRNISYDCRKEDLADRFREYGEIRDVYVPVDYYSQKPRGFAFVEFYNPDDAEEARVKLDKTDVHGREIQVMFAQNRRKRPEEMSTMDRNRG 121

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: V4KFI0_EUTSA (RRM domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KFI0_EUTSA)

HSP 1 Score: 119 bits (299), Expect = 2.310e-26
Identity = 81/160 (50.62%), Postives = 99/160 (61.88%), Query Frame = 1

Query:   94 RGRGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPPRRRSRSYS 573
            RG G  GR  S  R R G R RD  +P   SLLVRNL    R +D++R F  FG ++D+YLP D+ T  PRGF FV+F DPGDAA AK  +DGY L GR ++V++A+E RK+P EM  +ER  G     R   RS  R YS  + R SRSPP RR RS S
Sbjct:   12 RGYGRRGRSPS-PRGRYGSRSRD--LP--TSLLVRNLRHDCRQEDLRRSFEPFGPLKDIYLPRDYYTGDPRGFGFVQFVDPGDAAEAKYHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRSNRFRDRRRSPPRYYS-RSPRHSRSPPPRRGRSRS 165

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: UPI000BBE6E39 (serine/arginine-rich SC35-like splicing factor SCL33 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE6E39)

HSP 1 Score: 114 bits (284), Expect = 1.870e-25
Identity = 71/142 (50.00%), Postives = 92/142 (64.79%), Query Frame = 1

Query:  154 GRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRS--RGYSGYAARRSRSPPRRRSRSYS 573
            GR   +P   SLLVRNL+   R +D++R F  FG ++D+Y+P D+ T  PRGF FV+F DP DAA AK ++DGY+L GR ++V++A+E RK+P EM  +ER  GG  SVR   R RS  R YS       RSPP RR RS S
Sbjct:   31 GRSVDLP--TSLLVRNLSHDCRQEDLRRSFELFGPLKDIYMPRDYYTGDPRGFGFVQFVDPADAAEAKYQMDGYHLLGRELTVVFAEENRKKPTEMRARER--GGGRSVRSRDRRRSPPRYYS-------RSPPPRRGRSRS 161

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A7N0RBN8_KALFE (RRM domain-containing protein n=3 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0RBN8_KALFE)

HSP 1 Score: 114 bits (286), Expect = 4.480e-25
Identity = 78/165 (47.27%), Postives = 98/165 (59.39%), Query Frame = 1

Query:   73 TMSRDRDRGRGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPPRRRSRS 567
            + SR   RG GGYGR  S    RG   GRD  +P   SLLVRNL    R +D++R F  FG ++DVYLP D+ T +PRGF FV+F DP DAA AK ++DG  L GR ++V++A+E RK+P +M  +ER   GR          SRG       R RSPP R SRS
Sbjct:    5 SYSRSPPRGGGGYGRRRSPS-PRGRHGGRDRDLP--TSLLVRNLRRDCRPEDLRRPFGQFGPLKDVYLPRDYYTGEPRGFGFVQFVDPADAAEAKYQMDGQILQGREVTVVFAEENRKKPVDMRARERSSFGR----------SRGNE-----RRRSPPPRYSRS 151

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A078GHF6_BRANA ((rape) hypothetical protein n=10 Tax=Brassiceae TaxID=981071 RepID=A0A078GHF6_BRANA)

HSP 1 Score: 116 bits (290), Expect = 4.830e-25
Identity = 75/158 (47.47%), Postives = 90/158 (56.96%), Query Frame = 1

Query:  100 RGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPPRRRSRSYS 573
            RG YGR       RG   G  S      SLLVRNL    R DD++R F  FG ++D+YLP D+ T  PRGF FV+F DP DAA AK  +DGY L GR ++V++A+E RK+P EM  +ER     G VR  S            R SRSPPRRR RS S
Sbjct:   12 RGAYGRRGRSPSPRGRYGGGRSSRDLPTSLLVRNLRHDCRQDDLRRSFEQFGPLKDIYLPRDYYTGNPRGFGFVQFVDPADAAEAKYHMDGYVLHGRELTVVFAEENRKKPIEMRARER-----GGVRRRS----------PPRYSRSPPRRRGRSRS 154

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: M4D602_BRARP (RRM domain-containing protein n=12 Tax=Brassica TaxID=3705 RepID=M4D602_BRARP)

HSP 1 Score: 117 bits (292), Expect = 5.480e-25
Identity = 78/162 (48.15%), Postives = 100/162 (61.73%), Query Frame = 1

Query:  100 RGGYGRDESRERD-RGGDR-GRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRS--RGYSGYAARRSRSPPRRRSRSYS 573
            RG YGR + R    RGG R G    +    SLLVRNL    R +D++R F  FG ++D+Y+P D+ T  PRGF FV+F DP DAA AK ++DGY+L GR ++V++A+E RK+P EM  +ER  GG  S+R   R RS  R YS       RSPP RR RS S
Sbjct:   12 RGSYGRRDRRSPSPRGGGRYGGARSLDLPTSLLVRNLRHDCRQEDLRRSFEQFGPLKDIYMPRDYYTGDPRGFGFVQFVDPADAAEAKYQMDGYHLLGRELTVVFAEENRKKPTEMRARER--GGGRSIRSRDRRRSPPRYYS-------RSPPPRRGRSRS 164

[Close]

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A1S4A7U8_TOBAC (serine/arginine-rich SC35-like splicing factor SCL33 n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S4A7U8_TOBAC)

HSP 1 Score: 115 bits (287), Expect = 7.500e-25
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = 1

Query:  181 VSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPP----RRRSRSYS 573
             SLLVRNL    R +D++R F  FG V+D+YLP D+ T +PRGF FV+F DP DAA AK ++DG    GR ++V++A+E RK+P EM  +ER   G G  R Y R R      Y+ + SRSPP    R RSR YS
Sbjct:   37 TSLLVRNLRHDCRPEDLRRPFGQFGPVKDIYLPRDYYTGQPRGFGFVQFVDPADAAEAKYQMDGQGFQGRQLTVVFAEENRKKPTEMRARER--SGSGRSRSYDRRR------YSPQYSRSPPPRYARSRSRGYS 163

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FRC3_ECTSI	5.160e-75	85.19	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S2V1C3_9STRA	9.280e-32	61.70	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A7S3HCI8_9STRA	7.620e-28	58.70	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
A0A7S2BL32_9STRA	7.140e-27	50.93	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
V4KFI0_EUTSA	2.310e-26	50.63	RRM domain-containing protein n=2 Tax=Eutrema sals...	[more]
UPI000BBE6E39	1.870e-25	50.00	serine/arginine-rich SC35-like splicing factor SCL...	[more]
A0A7N0RBN8_KALFE	4.480e-25	47.27	RRM domain-containing protein n=3 Tax=Kalanchoe fe...	[more]
A0A078GHF6_BRANA	4.830e-25	47.47	(rape) hypothetical protein n=10 Tax=Brassiceae Ta...	[more]
M4D602_BRARP	5.480e-25	48.15	RRM domain-containing protein n=12 Tax=Brassica Ta...	[more]
A0A1S4A7U8_TOBAC	7.500e-25	48.89	serine/arginine-rich SC35-like splicing factor SCL...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig601	contig	P-littoralis_Contig601:77176..85396 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Seed ortholog	2880.D7FRC3
Preferred name	SCL25A
PFAMs	RRM_1
Model size	2440
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K12891,ko:K12900
KEGG Pathway	ko03040,ko05168,map03040,map05168
Hectar predicted targeting category	other localisation
GOs	GO:0000184,GO:0000244,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000381,GO:0000387,GO:0000395,GO:0000398,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005845,GO:0005846,GO:0005886,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006355,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006376,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006408,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006979,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009452,GO:0009719,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016482,GO:0016604,GO:0016607,GO:0017069,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019904,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032239,GO:0032241,GO:0032268,GO:0032386,GO:0032388,GO:0032774,GO:0032879,GO:0032991,GO:0033036,GO:0033119,GO:0034248,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035061,GO:0036260,GO:0042221,GO:0042795,GO:0042802,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0045292,GO:0045934,GO:0045935,GO:0046483,GO:0046700,GO:0046822,GO:0046824,GO:0046831,GO:0046833,GO:0046907,GO:0048024,GO:0048025,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050686,GO:0050733,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051030,GO:0051049,GO:0051050,GO:0051082,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051253,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0060341,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0071166,GO:0071310,GO:0071363,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0071944,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097064,GO:0097159,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1903311,GO:1903312,GO:1903313,GO:1903506,GO:2000112,GO:2001141
Exons	5
Evalue	5.31e-81
EggNOG OGs	KOG0118@1\|root,KOG0118@2759\|Eukaryota
Ec32 ortholog description	RNA recognition motif domain
Ec32 ortholog	Ec-26_002620.1
Description	RNA binding
Cds size	858
COG category	H
BRITE	ko00000,ko00001,ko01009,ko03041

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig601.16.5	prot_P-littoralis_Contig601.16.5	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig601 78683..85321 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791255.700567-UTR-P-littoralis_Contig601:77175..78682	1680791255.700567-UTR-P-littoralis_Contig601:77175..78682	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig601 77176..78682 -
1680791255.7827117-UTR-P-littoralis_Contig601:85321..85396	1680791255.7827117-UTR-P-littoralis_Contig601:85321..85396	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig601 85322..85396 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680791255.7179-CDS-P-littoralis_Contig601:78682..79040	1680791255.7179-CDS-P-littoralis_Contig601:78682..79040	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig601 78683..79040 -
1680791255.7327106-CDS-P-littoralis_Contig601:79344..79505	1680791255.7327106-CDS-P-littoralis_Contig601:79344..79505	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig601 79345..79505 -
1680791255.7477684-CDS-P-littoralis_Contig601:79887..79977	1680791255.7477684-CDS-P-littoralis_Contig601:79887..79977	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig601 79888..79977 -
1680791255.7602766-CDS-P-littoralis_Contig601:80333..80361	1680791255.7602766-CDS-P-littoralis_Contig601:80333..80361	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig601 80334..80361 -
1680791255.7709246-CDS-P-littoralis_Contig601:85100..85321	1680791255.7709246-CDS-P-littoralis_Contig601:85100..85321	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig601 85101..85321 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig601:77176..85396-
coding sequence from alignment at P-littoralis_Contig601:77176..85396-

protein sequence of mRNA_P-littoralis_Contig601.16.5

>prot_P-littoralis_Contig601.16.5 ID=prot_P-littoralis_Contig601.16.5|Name=mRNA_P-littoralis_Contig601.16.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=286bp
MSRDRDRGRGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVD
DVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGY
NLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYA
ARRSRSPPRRRSRSYSRSPPRRRERSYSRGRERRRSPSWSRSRSGSRRGG
GGGKGRGGYSRSPSPRRGRSPSPRNQRKDSEEEEPANGKGGGRDYDEEEE
DNHQNGNHRGREKDDDADGGGGGRHRDDYDDEQDR*

mRNA from alignment at P-littoralis_Contig601:77176..85396-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig601.16.5 ID=mRNA_P-littoralis_Contig601.16.5|Name=mRNA_P-littoralis_Contig601.16.5|organism=Pylaiella littoralis U1_48|type=mRNA|length=8221bp|location=Sequence derived from alignment at P-littoralis_Contig601:77176..85396- (Pylaiella littoralis U1_48)
CCGTTTCTTCTTTGCTCTTTTTACGCTCTCTCACACACCGAGCACATCAT
ACACGGAGAAAAAATTAGAGCCACGATGAGCCGTGACCGCGACCGGGGAA
GAGGTGGGTACGGGAGGGACGAAAGCCGCGAGCGTGACCGCGGCGGCGAC
CGCGGGAGGGACTCCGGGGTCCCCGGAAAGGTGTCCCTCCTCGTTCGCAA
CCTGACCTTCCGCACTCGGGTGGACGACGTGAAGCGCATCTTCAACGACT
TCGGGGACGTGCGTGACGTCTACCTGCCTCTCGACTTCGGAACACAGTGA
GTTTTTCAGCGTGGTGTGGCGGTCCATGTATGCGTCCTATCTGTGGATCC
GGAGGAGGAAAGGGGAGGCTCCTCACTGTTGTTTGTGGTGCCATCTCTCT
TCGTCCTTTCCTTCATTTCTGAAGTGCAATCCTCCTGGTTCCCGAAAACC
TATTTACTTGCATATAATGAGTAGAGAGAAGCGAATCCATGTCCCCCAAC
ATTGCCCATTATCCACACGGCATGTTTTCACACAGAGTGCAAGCACTGCT
GTACTATGTCGCGCGCGCGATCTCTCTCCTCCTCCCCGACTTTCCCGTCT
TTTGCCCCCTGGCCCTTCAAGAAACAAAGCTAAGCTTTGGAGAAGGAGTC
ATTACTTTCATGCCATGCCCAGAGGGTGCAAGTTTACAGCGTGACAGCGT
CGGCAATCTAGCACCGCTCCCCTGCCCTGCCTGCCCACCGTTATTCAAAA
ATCAAGACAGAGAAAACGAAACACCCTCTTGAACTAGCATCACATTCGTA
TACAAGGGGAAAACAAACATCTGTGTTTTTTTTTTTCTTTCAAATCATAT
CATACGATCACCTTTTTATGCCCGTCGGTTCGTCGAGAGTCCAGAGCAGC
CTACAGCAGTGCCCTACATAATGCTGTCAGCGCTAGTTTTCCGTTCTGTC
GCACATGACATGCAAACCAGCCGACACCAGTCTTTCGCTGCTCGGACGAT
GATCCCCTCCAACGTTTCCAACACTTCACACGAGTACGAGAATCGTAGAT
TTGACACAAGTATACCGTATTCTACACAAGATACCACACCCCGTGTTAAG
CTTTTTGCATTCCGTATAGCTCCACAACCAGGAGGGTGCCACTGCCGAAA
AGGGTGGTTTTGGAAAGATCTCGTCGAGAGCTTTCGTATGACGGGCTGTT
TGGTGTTCGCACCCTCCTGGTTGTGGAGCAATACGGAATGCAAAAAACCT
AACACGGGGTGTGGTATCTTGTGTAGAATACGGTATACGAAATCATGTGC
ACTACCGCCGTATTTGTCCGCACATGGCATATGAAATCATGTGTGTGAGC
ACTTGTCGTTGCTCGCATATAGCATATCGCGTGAGCATTACCGCTGTACT
CCTGTTTAAGAGTTCGAGTGTTCACATACCCTTTCATGGAAATTCGATGC
TCCGAAGTTTCATGCAAGCATTTTTTGTACGAATGAAATCATAGAATTTT
ACGTCGTATCTTGGTATTTTTTTTGGTGTTGGCGTTTGGGTGGTGCCACT
CTTGTGTTACGTCCTTTTTCGCACGAAGTACACCTCTTGTTGGTGGTTTA
TGTTGTTGTGGTCGTTCGTCTTGCTCTAAATCTAACATCTGCCCATATAT
TAAGGTGTACTACAAGTACAAGTATGCGAATCATGTACCTAGTTTTCGAA
GTATGACACATATGATATGACGCGCAAGATACACCCGACCCCGACCGGCT
TGCTTTTTGTGCTCGTACGTTATCTATCCTACAAAGCTATCGCTGCACTC
GCCTATCTCCAGACGTGCAGCAACAAAGACAAAAAATTGACAGCACTAAA
GTAAGTACTTGTGTTTTCATTGACGTATCAGGTATTTAATGCAACGATCG
TCGCAGGCTCAACGAGACAAAGCGAAGGCTTGAAAACTCGATTACTACTG
AAGCTCCTCAGCAGCACAGCAGTAGCATGTGTCACACAACGAAGGTGTTT
CCATCGCGTTTTTTTTTTTTTCGTTTCTGTGTCATACAGACCCGATGCGC
TCGCTCTCCGCTGTGACGTCAAGAAATAACCGAGCCTCCGAGCATGAAAA
TCGACCCGGGGGCTCCGTGGGTCACATTCCCGACGTATCATCCTGCTGTT
CTATATTCGCTTCTTCGCCTGCCTCTCTAGACTCCGTGTGGTGCCTGCGG
GCATCACGAACGCGGACGAAAAGCTCAACTTTGACCATCAACTACCCGTA
TATTCAGTATTACCGTAATTGTGCGGGTCGTCGCACCCCTCGGGGTTTTG
GCACCCATCGGGGTTATGGCACCGGGGTGCGAAAAAAAACACGAGAAAAA
AATATTTAATTGTATTTTCGCACCCCCGTCGGGGTTATCGCACCCGGGTG
CGATAACCCCGACAAAAATTCAAAATTGAGTGCTGCGGTGACGCGCCACG
CCAACATCGTATGTATGTACCGTATGCAAACCTACCGTATGTTTCTTCCA
GGTAGTTGCGATCGGTGAAAGATCAATCCATCACGTATCATTATCGCGCC
GACGCACGCGTTCAAATACCTCAAGTCATCGTATTAAAACTAGGTACCGG
TACCTGCCAACCTGACAAACACCGTTCCGACAACGAGGAGCGATTGGTTC
AACACACACCGATACAAAACCGATATTGCACGGGACATTTACCTAAGGCA
AACAACACTCCGCACCATCAGTGTTCATCCTTGTGCCACACGCCGCACCC
AACTCGCTTTCGGCCCCGTAACCTTCCTTCCAGCCAGCAACAATTAGTGT
ACCTAGAACGATCCCCGCATCTATCTAGGTACTTTGTCCTCAACTACCGG
CTGATAGCTTCACAGCTCAATCTCTCCCTCTCCTTCCTCGCCCCCATCGC
CCAAGAACTCTATATCGCTATCATCTTCCAGCAGCTCCACATCGCTGTCG
CCACCCTCCGGTGTCTGAAGGTGTGCGTTACTACGCCGTTCATTTACAAC
AGAGCGGGTGGTAGCTGGGGGCCAGTGAGCCGCTGTGGTGGTATTCAGTA
TCGCACCCATCGGGGTTATCGCACCGGGGTGCATGTGTGTAGCACCCATG
CCCCAGTAGGGCCGGAATATTTGATTCAGCTCCGCACCCATCGGGGTCAT
CGCACCGGGGTGCGCAAAAACCACCAAGAACGAAACATTTAATTGTATTA
TCGCACCCCTGCCGGGGTTATCGCACCCATCGGGGTTATCGCACCGGGGT
GCGAAAAAAAAATCAAGAAACATTTAAAATCGCGATCGCACCCGGTGCGA
TGACCCGCACAATTACGGTATAAAGCGGTGGTGGCCAAGTATGTCATGTG
TTGGTGTGATGTCTGCTGATGTATCGTGCGCTAAACGTGATGTTGCGTTT
CCGACGCCCGTAATCGCTCTTCCGCTCTCCTCTCGTGGTGTGTGTTGGGT
GTTCACCTGTCCCTCGCCCAAAACGCGCAAGATTGAGGTTTTTCTACCCC
ATGCCTCCAACCCCCCCCTACCCCAGCCCAGGCTGAAAAAGTAGAGAGTT
TGAGACATGGTGATGGTGAGGACGGGGCCAACAAGGAGCTTCAAAAAGTG
GTTGGATCGAACAAGCCCTCAAGTATGCGCCGTACCCCCCCCCCCCCCAC
CCCCCCTATCTCCTTACCCTCCCTCCCTGTCTTAAGTGGAAGTGGCTTTC
GCATCAAGTCAAGTCAAGAAGAAAGAAGCCACCACGCCCAAGCAAGTCGC
TCAAGCCGACTGCTGTTTTGCTTTGTATGATATTGCGCATCGAAAGCCAA
GGCCGCTCAAGCCGCTCTGATGTACAATTTATCACTGTGATTCGAACACG
GTTCGGGAAAGAAGAGAGACCTCGAGGCCGAAGGTGATTCGGAGATGTCA
CGAGTGAAGACAGAAGTACAGTAGCCACAAGAAACAAGAGCACGGCGGGC
ACAAAAGTGCTGTTGCCTCAAGAAACAATGGGCGCGGCTAGCAAGAGAAA
AAAAAGGTGGGGGGGGGTAGGCACGACAAGACAAGTGCGGCGTCCTCTCG
GTTCGGGTTCGGGTTTCCATGTTTGTGGATGGTGTTCTCTCCTCGGTCAC
ATGTTCAAGAGCTCAGTCTCAAGTCAAGTCAAGTCAAGCAACGCGCAAGA
TAACCAAGGACCCGAGACAGAGAGAAAGAGAGAGAGAGGCAAGGGTGAGA
AGAGTGGGAGATGGGGACGCCTCAAGCCTGTTCACTCAGACCAAGTGTGC
AAGAAAACCAAGGGCGAGAAAAGAGACTCAGAGAGAGAGAAGGGACAAGA
ACACGGTTTCCTGGTGTGAGTTCCCTCTGTCGCTGCTGATGAAGAAGCGC
ACCAAGGCGGAATGAAGGCAGAGACGGTGATTTTGTTAAATTTGTCCAGA
CCCCAACACCCCCGCTCCTGAATGAGGAGTCTTGATCGTTCGCTTCCTGG
AGAGAGAAGCAAAGGCTCGTGTTGTGCTGGTAGATTGTGTAAGCACACCG
TACAATGAGAAACACATTTTTTTTGTACATCCGTGACGTGTGCACAGGCG
TGCGACGTGCGGAAACTGCAGTGGGTTGGCATCGCGTTCGGCCTGAGTTT
TGGTGCACCTGTTGTAGATTACATACATACTGAATCGATCGATAGTTTCG
AAATACAGCGCTGTATTTTTTTATTACCCACGATTTGTGGTGCATGTTAT
CTGGCCTTGATGTATTTCAAGATGTTTGGTTTTCCGCGTGTGATGTTGGA
GAAAGAACGGTGCCCGCCGTCGTCCCCTGTACTCTGGAGTAGTATTTTTC
GCTCTCCGCGTGGACTGCTGTCGTTATTTTGTGTCTGAATGAACTGTAGA
AGGTTTCCCCGACGTTGTTCTCCTGTTGCTCACGGCCTACTTGGAACTCC
CACCCCCTGCACCCTGCTGTGCCCGCCGTGTCCTTGCCATGGTTACCCAA
ATGCGGACCTGCTGCTGCTGCTGCTGCCGTTACACTGCTTGTGCGGTGCC
CTGCTGCGCGCTGCCCCTTTTATCTGTGCGTACAGGAAGCCCCGAGGCTT
CGCTTTCGTAGAGGTGAGCACAGCGAAAAGATACGAGCGATCTGATTGGC
CAAACGCTGCGCGTACTTATCCAGCAACGTATCATGGCTTTCGCAAGAAC
GGCACGAACGGGATGCTTGAAATATCAAGTTCCTGTATGTACGACGAACG
TTTGCAGAAACGGTGCTGCTATGATACACTGTACAGCAGTAGCAGTTTTC
TTTTTTGTGAAACCCCCACGATCGATCAAAGGTTGCGGGTGCGTGGCGCT
GTCCCTTTCGGTGACGATCCAGGCCGCTGCCCCTATATAGCCGCACGGCA
CCCCGGTCATCCTTCTCCGCTTGTGGGTGCATTTGTTGTTCTCTGGTGCT
GCCGCTTTTTTTTATTCAGTTCTACGATCCCGGAGATGCCGCCCACGCGA
AGGACCGCCTCGACGGTTACAACCTGGACGGGCGCAACATCTCCGTGCTC
TACGCCCAGGTGCGGAAATACTCCTCCCAGCCACGCAGTGGATGATTGTC
GCGTATGATCATACATGCTACTATTGCGATATTTGATGCTCAGTTCATGC
AATGAAGGTCCCGCTAGAGTTTTTCCTCGCGGTTGTTCGAGGTGAACGTT
TTTTTTTGTTGTTTGAAAGCTGAGCATGTTAAATTTGGTGTTTCCCTTGT
TCAAGCCGTCCTGAATCGACGTGTTTTGTTGGAGGGTCAGTTGGGCGGCG
AAATATCGCGGTTGGCGTTTTGTCCGCCTGGCCCGCCCGCCCACCTTTTA
TCGTCATTTCATCTTCTTTTTTTTACTCGACCTGCGCTTGACTGACGGTT
ACTTCATATGTTTTGGCGCCTGACCTGTAACCTTGACACAGGAAAAGCGC
AAGAGGCCCGACGAGATGGTCCACAAGGAACGGAGAGAGGGGGGCCGCGG
CAGCGTCAGGGGGTACTCGAGGTCCCGCTCCCGCGGGTACAGCGGCTACG
CGGCTCGCCGCTCCCGCTCGCCCCCTCGGCGCCGGTCTCGGTCCTACTCC
AGGTGGGGTGTGGCGCGGTGCAGGGCCCGTGTTTGGGGTCGCCTTTGCTA
CATCTGCTGCGGCTGCTGCGGCCCCCGCCCCGTGGCCCTGTGAAGGGAAT
ACCATGAGATGAACCAAGTCATTAACAACCCTTTTGTATCTTTTAGTATT
CGCGTCACGCTTCCGCCTATAATTTTTTACGTTAATCTCTTGGGATCTTG
TGGGAGTCCCAACATGCATGTGCTTCTTGTTGAACCCATGCCCTCCCCCC
CCCTTCTCTTTTCTGTTATTTCGGAAATCCACAATATCCCCGTGGCGCAC
GCACAGATCCCCCCCGCGCAGACGGGAGCGGAGCTACTCCAGGGGCCGCG
AGCGCCGCAGGAGCCCGTCGTGGAGCCGGTCCCGCAGCGGCAGCCGCCGT
GGCGGAGGAGGCGGAAAAGGAAGGGGAGGATACTCCCGCAGCCCCTCCCC
CCGCCGCGGCAGGTCTCCGTCGCCGAGGAATCAGAGGAAGGACAGCGAGG
AGGAGGAGCCCGCCAATGGAAAGGGCGGTGGTCGCGATTACGATGAGGAG
GAGGAGGACAACCATCAAAATGGAAACCACCGGGGGCGTGAGAAGGATGA
CGACGCGGATGGCGGCGGCGGCGGCAGGCACAGGGACGATTATGACGACG
AGCAGGATCGCTAGATGGTTGTTGATTGTGTGCTGGTTACATGGGTAAAT
GGTAAGAAATTAGTTGGTTGCTTGGTGGTCATATTGGTATGCTTGATTTG
TGTTTTCCACAACTGTCAGTTCAGGCTGCGCTGCCACTTGGGAACCTCGT
GTCTCGCGCAACCCTGGGGTTCTTAAACCTCTGTGGGTTACCCAACAGCC
AGTATATCGGTCTCACTGGGTCTTGCTGGTTCTCATATTTTATAAAGTGG
ACCCCTGGAGGTCTTGACACGAAGTTCTGAAATGGTGGCGTAGCCCGTAT
TTTGCTTCGAAGTACGACAGCAGCATTGGTGAGAGGGTCGTGCTTTGATT
TTCTTCTGTTTCGGAGTTGTTTTGGAAATTGGTGCATGTGCATGACGGGA
AGGGTATTTCTCAGGGCACGAGCTTGTTTGCTCACGCAGTACATTTTGAC
ATGGACTGGTCAAATGTAATTGTGCCACTAGTCTCGGTAAAAAAAAATAT
ATAGTGATGTAATAAAGCGGCCATCATTGCCGGAAAACGCCTTCAGCTGG
CTTTTGTATGTGTGCCCTGCCGCCCATGGGGCACCCAGATACCGACTGCA
AAAGCTCTGAGGGGGTACTGTTGCACATGGTGCACAACGCCCGAACGGTG
TAAGTCATATGATACGTCGGCAAAGGTCAAGAGTTTATTTACTAGCGTTT
GAGTCGGGGGGAGCTTACAAGGCCAGCCTCTTTCGCAAGCCCTAGATGTA
AGAAGAGGTCGTCCACATTTTGTCAGGTAGTTTTGACCCCACTCGAACCA
GCCGCTGTTGTTTCCTATGTTGTGCACTCAGCCGATGCATGTCGGAAACC
TTGAACGAAATGGTGTGCGCTCTGTTTGGTATTGCGATGCATATACTTTC
CGTTGCCTCCTCTTGTCTTGTTTCGCGGTGGGTGGGGCACAGCACTTTTT
TTTTGTTTTGGCGTATAGTTTCACCTAGACGGGGAAAGACGAGGGCAGTT
GCGCGCCGTGGTTTGTATTGCTTTTGTTACTGGTAATTCTAAAAGGAAGC
ATTGCATTCTTTGGGTCGAAAACCAAACATCTCAGGCAAGCGGAGAACAT
CCAGGATAAAGGCCTACAGGCCCCTGAAGGAGAGGTAAAGTTGTGAATGC
CCCCATGACATGTCGGTGAAGAACGTTCTCTGACGTTTACTCAGGACGTG
CCGTTTGGTGGAATATACAGCTAAGGGCCCAAAAGCGGTGTCTTGAGCCT
GCGTAGGGGGCCGGGCTAATTCCAATTTCAACCCTTGAAAAGGTTGGACA
AACACACTTGCGAAAACTGAAACGGCAGTGTATTTTGAAGCAGCGAGATT
CCTTTTGAGCTCACAAAAAGCTACGTTATGTGTACGTGAATATGACAGAC
TAGCACTTCACGGGTAACTTCTAGATGACGGGTCGTGAGCGACCGTCGTG
TAGGTATTGTAGCGGTGGCAATACCACACACAAAGCCTTCGTGTTGAAGG
ATGAAACACACAAAAGTTCAG

Coding sequence (CDS) from alignment at P-littoralis_Contig601:77176..85396-

>mRNA_P-littoralis_Contig601.16.5 ID=mRNA_P-littoralis_Contig601.16.5|Name=mRNA_P-littoralis_Contig601.16.5|organism=Pylaiella littoralis U1_48|type=CDS|length=858bp|location=Sequence derived from alignment at P-littoralis_Contig601:77176..85396- (Pylaiella littoralis U1_48)
ATGAGCCGTGACCGCGACCGGGGAAGAGGTGGGTACGGGAGGGACGAAAG
CCGCGAGCGTGACCGCGGCGGCGACCGCGGGAGGGACTCCGGGGTCCCCG
GAAAGGTGTCCCTCCTCGTTCGCAACCTGACCTTCCGCACTCGGGTGGAC
GACGTGAAGCGCATCTTCAACGACTTCGGGGACGTGCGTGACGTCTACCT
GCCTCTCGACTTCGGAACACAGAAGCCCCGAGGCTTCGCTTTCGTAGAGT
TCTACGATCCCGGAGATGCCGCCCACGCGAAGGACCGCCTCGACGGTTAC
AACCTGGACGGGCGCAACATCTCCGTGCTCTACGCCCAGGAAAAGCGCAA
GAGGCCCGACGAGATGGTCCACAAGGAACGGAGAGAGGGGGGCCGCGGCA
GCGTCAGGGGGTACTCGAGGTCCCGCTCCCGCGGGTACAGCGGCTACGCG
GCTCGCCGCTCCCGCTCGCCCCCTCGGCGCCGGTCTCGGTCCTACTCCAG
ATCCCCCCCGCGCAGACGGGAGCGGAGCTACTCCAGGGGCCGCGAGCGCC
GCAGGAGCCCGTCGTGGAGCCGGTCCCGCAGCGGCAGCCGCCGTGGCGGA
GGAGGCGGAAAAGGAAGGGGAGGATACTCCCGCAGCCCCTCCCCCCGCCG
CGGCAGGTCTCCGTCGCCGAGGAATCAGAGGAAGGACAGCGAGGAGGAGG
AGCCCGCCAATGGAAAGGGCGGTGGTCGCGATTACGATGAGGAGGAGGAG
GACAACCATCAAAATGGAAACCACCGGGGGCGTGAGAAGGATGACGACGC
GGATGGCGGCGGCGGCGGCAGGCACAGGGACGATTATGACGACGAGCAGG
ATCGCTAG