prot_P-littoralis_Contig601.16.5 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-littoralis_Contig601.16.5
Unique Name	prot_P-littoralis_Contig601.16.5
Type	polypeptide
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length	286

Homology

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: D7FRC3_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRC3_ECTSI)

HSP 1 Score: 252 bits (644), Expect = 3.240e-80
Identity = 138/162 (85.19%), Postives = 140/162 (86.42%), Query Frame = 0

Query:    5 RDRGRGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPPRRRSRSYS 166
            RDRGRGGYGRD+SR RD        SG PGKVSLLVRNLTFRTRVDDVKRIF DFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHA+DRLDGYNLDGRNISVLYAQEKRKRPDEMVHKER EG     RG S    RGYSGYAARRSRSPPRRRSRSYS
Sbjct:    3 RDRGRGGYGRDDSRGRDXXXXXXXXSG-PGKVSLLVRNLTFRTRVDDVKRIFTDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHARDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERVEGRGDYGRGRSXXXXRGYSGYAARRSRSPPRRRSRSYS 163

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A7S2V1C3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1C3_9STRA)

HSP 1 Score: 130 bits (327), Expect = 2.430e-34
Identity = 58/94 (61.70%), Postives = 78/94 (82.98%), Query Frame = 0

Query:   33 PGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKE 126
            P  VSLLVRN+++RTR +D++ IF+ +GD+RDVYLP+D+ +++PRGFAFVEFYD  DAA AKD LD Y LD R I+V++AQ++RKRP+EM H E
Sbjct:   25 PDGVSLLVRNISYRTRAEDLRYIFSKYGDIRDVYLPMDYHSKEPRGFAFVEFYDGRDAADAKDALDRYALDNRQIAVVFAQQRRKRPEEMAHTE 118

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A7S3HCI8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HCI8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 4.710e-30
Identity = 54/92 (58.70%), Postives = 71/92 (77.17%), Query Frame = 0

Query:   31 GVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEM 122
            G     SLLVRNL++R R D+++RIF  +GD+RDVY+P D+ TQ+PRGFAFVEFYD  DAA A D LD Y +DGR I+V++A+++RK  DEM
Sbjct:   40 GPEATTSLLVRNLSYRVRADEIRRIFVRYGDIRDVYIPQDYHTQRPRGFAFVEFYDRRDAADALDHLDRYEMDGREIAVVFAKDRRKTADEM 131

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A7S2BL32_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BL32_9STRA)

HSP 1 Score: 118 bits (296), Expect = 4.890e-29
Identity = 55/108 (50.93%), Postives = 80/108 (74.07%), Query Frame = 0

Query:   23 GGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREG 130
            G DR R +G  G+VSLLVRN+++  R +D+   F ++G++RDVY+P+D+ +QKPRGFAFVEFY+P DA  A+ +LD  ++ GR I V++AQ +RKRP+EM   +R  G
Sbjct:   14 GSDRDRPAGEDGQVSLLVRNISYDCRKEDLADRFREYGEIRDVYVPVDYYSQKPRGFAFVEFYNPDDAEEARVKLDKTDVHGREIQVMFAQNRRKRPEEMSTMDRNRG 121

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: V4KFI0_EUTSA (RRM domain-containing protein n=2 Tax=Eutrema salsugineum TaxID=72664 RepID=V4KFI0_EUTSA)

HSP 1 Score: 118 bits (295), Expect = 5.170e-28
Identity = 79/158 (50.00%), Postives = 97/158 (61.39%), Query Frame = 0

Query:   11 GYGRDESRERDRG--GDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPPRRRSRSYS 166
            GYGR       RG  G R RD  +P   SLLVRNL    R +D++R F  FG ++D+YLP D+ T  PRGF FV+F DPGDAA AK  +DGY L GR ++V++A+E RK+P EM  +ER  G     R   RS  R YS  + R SRSPP RR RS S
Sbjct:   13 GYGRRGRSPSPRGRYGSRSRD--LP--TSLLVRNLRHDCRQEDLRRSFEPFGPLKDIYLPRDYYTGDPRGFGFVQFVDPGDAAEAKYHMDGYLLLGRELTVVFAEENRKKPTEMRARERGGGRSNRFRDRRRSPPRYYS-RSPRHSRSPPPRRGRSRS 165

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: UPI000BBE6E39 (serine/arginine-rich SC35-like splicing factor SCL33 n=1 Tax=Brassica napus TaxID=3708 RepID=UPI000BBE6E39)

HSP 1 Score: 114 bits (284), Expect = 1.870e-27
Identity = 71/142 (50.00%), Postives = 92/142 (64.79%), Query Frame = 0

Query:   27 GRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRS--RGYSGYAARRSRSPPRRRSRSYS 166
            GR   +P   SLLVRNL+   R +D++R F  FG ++D+Y+P D+ T  PRGF FV+F DP DAA AK ++DGY+L GR ++V++A+E RK+P EM  +ER  GG  SVR   R RS  R YS       RSPP RR RS S
Sbjct:   31 GRSVDLP--TSLLVRNLSHDCRQEDLRRSFELFGPLKDIYMPRDYYTGDPRGFGFVQFVDPADAAEAKYQMDGYHLLGRELTVVFAEENRKKPTEMRARER--GGGRSVRSRDRRRSPPRYYS-------RSPPPRRGRSRS 161

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A1S4A7U8_TOBAC (serine/arginine-rich SC35-like splicing factor SCL33 n=6 Tax=Nicotiana TaxID=4085 RepID=A0A1S4A7U8_TOBAC)

HSP 1 Score: 115 bits (287), Expect = 6.350e-27
Identity = 66/135 (48.89%), Postives = 85/135 (62.96%), Query Frame = 0

Query:   36 VSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPP----RRRSRSYS 166
             SLLVRNL    R +D++R F  FG V+D+YLP D+ T +PRGF FV+F DP DAA AK ++DG    GR ++V++A+E RK+P EM  +ER   G G  R Y R R      Y+ + SRSPP    R RSR YS
Sbjct:   37 TSLLVRNLRHDCRPEDLRRPFGQFGPVKDIYLPRDYYTGQPRGFGFVQFVDPADAAEAKYQMDGQGFQGRQLTVVFAEENRKKPTEMRARER--SGSGRSRSYDRRR------YSPQYSRSPPPRYARSRSRGYS 163

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: K3ZWZ0_SETIT (RRM domain-containing protein n=10 Tax=Paniceae TaxID=147428 RepID=K3ZWZ0_SETIT)

HSP 1 Score: 113 bits (282), Expect = 9.030e-27
Identity = 69/128 (53.91%), Postives = 87/128 (67.97%), Query Frame = 0

Query:   20 RDRGGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYS 147
            RD  GDRGRD  +P   SLLVRNL    R +D++R F  FG V+D+YLP D+ T +PRGF FV+FYDP DAA AK  +DG  + GR I+V++A+E RK+P EM  ++R  G R   R YSRSRS  YS
Sbjct:   25 RDYNGDRGRD--LP--TSLLVRNLRRDCRPEDLRRPFAQFGRVKDIYLPRDYYTGEPRGFGFVQFYDPEDAADAKYYMDGQIVLGRQITVVFAEENRKKPQEMRARDRVRG-RSYDRRYSRSRSPPYS 147

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: A0A078GHF6_BRANA ((rape) hypothetical protein n=10 Tax=Brassiceae TaxID=981071 RepID=A0A078GHF6_BRANA)

HSP 1 Score: 114 bits (286), Expect = 1.390e-26
Identity = 75/158 (47.47%), Postives = 90/158 (56.96%), Query Frame = 0

Query:    9 RGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYAARRSRSPPRRRSRSYS 166
            RG YGR       RG   G  S      SLLVRNL    R DD++R F  FG ++D+YLP D+ T  PRGF FV+F DP DAA AK  +DGY L GR ++V++A+E RK+P EM  +ER     G VR  S            R SRSPPRRR RS S
Sbjct:   12 RGAYGRRGRSPSPRGRYGGGRSSRDLPTSLLVRNLRHDCRQDDLRRSFEQFGPLKDIYLPRDYYTGNPRGFGFVQFVDPADAAEAKYHMDGYVLHGRELTVVFAEENRKKPIEMRARER-----GGVRRRS----------PPRYSRSPPRRRGRSRS 154

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BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Match: M4D602_BRARP (RRM domain-containing protein n=12 Tax=Brassica TaxID=3705 RepID=M4D602_BRARP)

HSP 1 Score: 115 bits (288), Expect = 1.420e-26
Identity = 78/162 (48.15%), Postives = 100/162 (61.73%), Query Frame = 0

Query:    9 RGGYGRDESRERD-RGGDR-GRDSGVPGKVSLLVRNLTFRTRVDDVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGYNLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRS--RGYSGYAARRSRSPPRRRSRSYS 166
            RG YGR + R    RGG R G    +    SLLVRNL    R +D++R F  FG ++D+Y+P D+ T  PRGF FV+F DP DAA AK ++DGY+L GR ++V++A+E RK+P EM  +ER  GG  S+R   R RS  R YS       RSPP RR RS S
Sbjct:   12 RGSYGRRDRRSPSPRGGGRYGGARSLDLPTSLLVRNLRHDCRQEDLRRSFEQFGPLKDIYMPRDYYTGDPRGFGFVQFVDPADAAEAKYQMDGYHLLGRELTVVFAEENRKKPTEMRARER--GGGRSIRSRDRRRSPPRYYS-------RSPPPRRGRSRS 164

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot

BLAST of mRNA_P-littoralis_Contig601.16.5 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FRC3_ECTSI	3.240e-80	85.19	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A7S2V1C3_9STRA	2.430e-34	61.70	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A7S3HCI8_9STRA	4.710e-30	58.70	Hypothetical protein (Fragment) n=1 Tax=Spumella e...	[more]
A0A7S2BL32_9STRA	4.890e-29	50.93	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
V4KFI0_EUTSA	5.170e-28	50.00	RRM domain-containing protein n=2 Tax=Eutrema sals...	[more]
UPI000BBE6E39	1.870e-27	50.00	serine/arginine-rich SC35-like splicing factor SCL...	[more]
A0A1S4A7U8_TOBAC	6.350e-27	48.89	serine/arginine-rich SC35-like splicing factor SCL...	[more]
K3ZWZ0_SETIT	9.030e-27	53.91	RRM domain-containing protein n=10 Tax=Paniceae Ta...	[more]
A0A078GHF6_BRANA	1.390e-26	47.47	(rape) hypothetical protein n=10 Tax=Brassiceae Ta...	[more]
M4D602_BRARP	1.420e-26	48.15	RRM domain-containing protein n=12 Tax=Brassica Ta...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 37..110 e-value: 3.1E-21 score: 86.6
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 38..107 e-value: 2.0E-18 score: 66.0
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 36..114 score: 17.830454
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 28..154 e-value: 1.5E-26 score: 95.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 169..189
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..285
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 154..168
None	No IPR available	PANTHER	PTHR15481	RIBONUCLEIC ACID BINDING PROTEIN S1	coord: 20..228
None	No IPR available	PANTHER	PTHR15481:SF0	LD23870P-RELATED	coord: 20..228
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 30..122

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig601	contig	P-littoralis_Contig601:78683..85321 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig601.16.5	mRNA_P-littoralis_Contig601.16.5	Pylaiella littoralis U1_48	mRNA	P-littoralis_Contig601 77176..85396 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-littoralis_Contig601.16.5 ID=prot_P-littoralis_Contig601.16.5|Name=mRNA_P-littoralis_Contig601.16.5|organism=Pylaiella littoralis U1_48|type=polypeptide|length=286bp
MSRDRDRGRGGYGRDESRERDRGGDRGRDSGVPGKVSLLVRNLTFRTRVD
DVKRIFNDFGDVRDVYLPLDFGTQKPRGFAFVEFYDPGDAAHAKDRLDGY
NLDGRNISVLYAQEKRKRPDEMVHKERREGGRGSVRGYSRSRSRGYSGYA
ARRSRSPPRRRSRSYSRSPPRRRERSYSRGRERRRSPSWSRSRSGSRRGG
GGGKGRGGYSRSPSPRRGRSPSPRNQRKDSEEEEPANGKGGGRDYDEEEE
DNHQNGNHRGREKDDDADGGGGGRHRDDYDDEQDR*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf