prot_P-littoralis_Contig60.112.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig60.112.1
Unique Nameprot_P-littoralis_Contig60.112.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length287
Homology
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BLAST of mRNA_P-littoralis_Contig60.112.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 5.430e-84
Identity = 144/204 (70.59%), Postives = 163/204 (79.90%), Query Frame = 0 
Query:    2 QMLGENIQQKPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGSCPYGAGSCAFAHGLGELRHPTLDDGAIAKSVSEDSESCPSPLDVVSPSSRRCGTIGRVPPSPCDRRLPTFVSLSTGTTPVTGGGHSGHFASPSMRRTYGYANDPQQGTTCHRRTQSFPSPSSA-FSDSCGFGVAVDAPPLSPASFHRGGVSASSP-LSSFS 203
            Q+LGE IQQ+PRGRRPRRRSRSGDGVVLANRKTEICLHWQTG+CPYGAGSCAFAHGLGELRHPTLDD AIA+SVSEDS SCPS  D  S SSR  G IGRVP SPC+RRLPTFV LSTG TPV G  H+ H++SP+ R   GY ++ Q  T  H+R++S+PSPSS+ FSDS GFGVAVDAPP+SP  + R      SP  SSF+
Sbjct:    4 QVLGEKIQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDT-SLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFT 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI5.430e-8470.59C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 31..58
e-value: 1.8E-7
score: 40.8
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 33..57
e-value: 9.4E-5
score: 22.2
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 31..59
score: 14.70859
NoneNo IPR availableGENE3D4.10.1000.10coord: 30..63
e-value: 5.0E-11
score: 43.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 241..287
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26
IPR036855Zinc finger, CCCH-type superfamilySUPERFAMILY90229CCCH zinc fingercoord: 30..63

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:510065..514240 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.112.1mRNA_P-littoralis_Contig60.112.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig60 510065..514240 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig60.112.1 ID=prot_P-littoralis_Contig60.112.1|Name=mRNA_P-littoralis_Contig60.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MQMLGENIQQKPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGSCPYGAG
SCAFAHGLGELRHPTLDDGAIAKSVSEDSESCPSPLDVVSPSSRRCGTIG
RVPPSPCDRRLPTFVSLSTGTTPVTGGGHSGHFASPSMRRTYGYANDPQQ
GTTCHRRTQSFPSPSSAFSDSCGFGVAVDAPPLSPASFHRGGVSASSPLS
SFSGQLHHRLSSTSSSATTGAVTAGGGGGGGKYRNYGSGCSSAASSPAGA
DSAPPSPVSWSREDSQKKRGEGGFMGGGGGGGGAAQP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000571Znf_CCCH
IPR036855Znf_CCCH_sf