mRNA_P-littoralis_Contig60.112.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig60.112.1
Unique NamemRNA_P-littoralis_Contig60.112.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig60.112.1 vs. uniprot
Match: D8LGY5_ECTSI (C3H1-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY5_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 5.430e-84
Identity = 144/204 (70.59%), Postives = 163/204 (79.90%), Query Frame = 1 
Query:    4 QMLGENIQQKPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGSCPYGAGSCAFAHGLGELRHPTLDDGAIAKSVSEDSESCPSPLDVVSPSSRRCGTIGRVPPSPCDRRLPTFVSLSTGTTPVTGGGHSGHFASPSMRRTYGYANDPQQGTTCHRRTQSFPSPSSA-FSDSCGFGVAVDAPPLSPASFHRGGVSASSP-LSSFS 609
            Q+LGE IQQ+PRGRRPRRRSRSGDGVVLANRKTEICLHWQTG+CPYGAGSCAFAHGLGELRHPTLDD AIA+SVSEDS SCPS  D  S SSR  G IGRVP SPC+RRLPTFV LSTG TPV G  H+ H++SP+ R   GY ++ Q  T  H+R++S+PSPSS+ FSDS GFGVAVDAPP+SP  + R      SP  SSF+
Sbjct:    4 QVLGEKIQQRPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGTCPYGAGSCAFAHGLGELRHPTLDDEAIARSVSEDSGSCPSSRDT-SLSSRCGGVIGRVPHSPCERRLPTFVDLSTGNTPVRGSRHTRHWSSPATRYPPGYYSNGQPRTPHHQRSRSYPSPSSSDFSDSYGFGVAVDAPPVSPQCYRREAAPPRSPRCSSFT 206
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig60.112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY5_ECTSI5.430e-8470.59C3H1-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig60contigP-littoralis_Contig60:510065..514240 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FIR3
PFAMszf-CCCH
Model size861
Max annot lvl2759|Eukaryota
KEGG koko:K06236,ko:K18753
KEGG Pathwayko04151,ko04218,ko04510,ko04512,ko04611,ko04926,ko04933,ko04974,ko05146,ko05165,map04151,map04218,map04510,map04512,map04611,map04926,map04933,map04974,map05146,map05165
Hectar predicted targeting categoryother localisation
Exons7
Evalue3.6e-05
EggNOG OGsCOG5063@1|root,KOG1677@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-14_001450.1
Description3'-UTR-mediated mRNA destabilization
Cds size861
COG categoryK
BRITEko00000,ko00001,ko00536,ko03019,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig60.112.1prot_P-littoralis_Contig60.112.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig60 510065..514240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791251.509678-CDS-P-littoralis_Contig60:510064..5101631680791251.509678-CDS-P-littoralis_Contig60:510064..510163Pylaiella littoralis U1_48CDSP-littoralis_Contig60 510065..510163 +
1680791251.5268004-CDS-P-littoralis_Contig60:511224..5112701680791251.5268004-CDS-P-littoralis_Contig60:511224..511270Pylaiella littoralis U1_48CDSP-littoralis_Contig60 511225..511270 +
1680791251.5388548-CDS-P-littoralis_Contig60:512107..5121711680791251.5388548-CDS-P-littoralis_Contig60:512107..512171Pylaiella littoralis U1_48CDSP-littoralis_Contig60 512108..512171 +
1680791251.5514357-CDS-P-littoralis_Contig60:512788..5130061680791251.5514357-CDS-P-littoralis_Contig60:512788..513006Pylaiella littoralis U1_48CDSP-littoralis_Contig60 512789..513006 +
1680791251.5629199-CDS-P-littoralis_Contig60:513314..5135601680791251.5629199-CDS-P-littoralis_Contig60:513314..513560Pylaiella littoralis U1_48CDSP-littoralis_Contig60 513315..513560 +
1680791251.5769627-CDS-P-littoralis_Contig60:513617..5137511680791251.5769627-CDS-P-littoralis_Contig60:513617..513751Pylaiella littoralis U1_48CDSP-littoralis_Contig60 513618..513751 +
1680791251.5900967-CDS-P-littoralis_Contig60:514186..5142401680791251.5900967-CDS-P-littoralis_Contig60:514186..514240Pylaiella littoralis U1_48CDSP-littoralis_Contig60 514187..514240 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig60.112.1

>prot_P-littoralis_Contig60.112.1 ID=prot_P-littoralis_Contig60.112.1|Name=mRNA_P-littoralis_Contig60.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=287bp
MQMLGENIQQKPRGRRPRRRSRSGDGVVLANRKTEICLHWQTGSCPYGAG
SCAFAHGLGELRHPTLDDGAIAKSVSEDSESCPSPLDVVSPSSRRCGTIG
RVPPSPCDRRLPTFVSLSTGTTPVTGGGHSGHFASPSMRRTYGYANDPQQ
GTTCHRRTQSFPSPSSAFSDSCGFGVAVDAPPLSPASFHRGGVSASSPLS
SFSGQLHHRLSSTSSSATTGAVTAGGGGGGGKYRNYGSGCSSAASSPAGA
DSAPPSPVSWSREDSQKKRGEGGFMGGGGGGGGAAQP
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mRNA from alignment at P-littoralis_Contig60:510065..514240+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig60.112.1 ID=mRNA_P-littoralis_Contig60.112.1|Name=mRNA_P-littoralis_Contig60.112.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4176bp|location=Sequence derived from alignment at P-littoralis_Contig60:510065..514240+ (Pylaiella littoralis U1_48)
ATGCAGATGCTAGGGGAAAACATCCAGCAGAAGCCTAGAGGCAGACGTCC
TAGACGGCGGTCACGGTCTGGCGACGGTGTCGTCCTCGCCAATCGGAAGG
TGTGTGCGCGCGTGTGTGTGAAAGTGTGTGTGTGAAAAAGTGTGCGTGTA
AGCTCTTTGCACCGACGGTTGGTTTTTGTTTTGTGTCTCCGCAAAAACCC
GCCAGTCTCCCGAAGATCGCCGCCCCGGGTACAGCACCACGGACGTCGGC
AGTTGGTTGCGTGCGTTGTGATTGGCCTTTGGTATCAACCGCTGCTCTGG
GATGTTTTCGCTCACTCTTACAGCAAGGACTGGGGGCTTGCGTATGTAGG
TTTATACAAAGGAAAAACCCAGCTACGCGCACAGACGTTGTTTTTGGTTA
CCGTCTTTCACGATGAACACTGCGGTATAACATACTCCGTATCACACAGC
AGTGAAGTATCGTATCATTATCAAATGCGTCTGCTGCTTAACACAATGTA
CAGTACACTGGTGACCCCGGCTGGTGCACTCACACTTCGTACGTGAAAGG
CGTAGACAGGTGCCCAGAATAAATGGGATGTGAACACACACGCACACACG
CACACACAAATACACTGGAGTGTCGAAAATTGTCTGGAACATCGAAAAAA
AAAAACACGCACAGAGGTCGTGTGGACGTGTGGACCCATCGCATCTATCT
CCATTTGATGGACAGCATACAACAGCAGCAGCAGCGGGTGCGCTGTGCGA
GAGCTCTTCTTGGCTCTCCGACACTGCAAAATAATCTACCTGCTGTGCAG
AGGTTGGCGAGAAACCAGTACTGCCATACTCTGTGTGCGCTATGGCACAC
GTAGGCCATACTACACTGCTGTAGATGACAGAGACTCATCCTGGATTCCT
GGATTGACTGTCGATAAATGATACTGTACGGAAAAACTGGTTGTTGCCCG
ATCTTCTCAGCGCGGTTCATCGCGCCTCGCACACCAGTACACTCTACCCA
AACGCCGGACGCAGTTGCTCACCCCTTACCCTCAGCTCCCGACACCTACT
ACCCTCCCTCTCTCGTTGCGGTGTGGTGGCTGCTCGACTGCTGCCTGAAC
TGGGTCCCACGGACTGCGAATGAATGGGATGGTTGATTGTCACGCACCAC
TTATCAACAGACCGAGATCTGCCTCCACTGGCAAACTGGATCTTGCCCTT
ATGGAGGTATGGCAAATTTAGTACTGCTGTATGTAAATCGGTATAATCCA
GATAGCTTTTTATCGTTGGATGTTTTTACTTCCGGTCTGATATCCAGAAG
TATATAAAACCTACCTTCTCCTAGGATAGACCTTGGAGCGCATGAAATTA
TTCAACACTGCTTGTAGTCGAAATCGGGAAGGGCGCAGGCAGTGGGCCGA
TTTTCTATCGTATTGTCCATGATCTCCACGCCAAACCATTTCATTGGTGA
TAAACGGTCCAGCCAATGTGGGTCCCCGTGTGTGTTTTACCGACGAATAC
TTGGTACTGCAGATACGCACGGCGGCTGTTCTACTACTACTGTAACGACC
TGCAGTTGATGTGTTGGGTGTGTTTAGAGAGTAAGTTGGAACGTCAACCA
CATTTTTTTTTCTTTTTTTACCTTGACGTCACAAGAAATAGTACCACAGG
CAAAAAAAAGTGAAACAGCTACTCTCGGTTGGATTCATTAGATAATAAAA
AGTTAGTTTGAAAGGCCAGACCGCCGCTCGAAGAAAGGCGCTTGCAAGAA
ATAAACTCGAATAAATGAGTTCATTCCTGCAGCTGTTTGTGTAGCCGTTT
GTAGAGCCAAAAACACGTTGTTGCGTTTTTCGCTCGACGTCACCATTCTA
TGGCTGGTTAGCTTCAGCTCACTTCTTTACGTGACGTTTTACTTTTATTG
CGCTCGCCCTGGTTTGTTGTGCCTCCCTGTTAATTCACCTACTACCATCC
CCACGATGGGCGGATGTATCCATACACCATGGCGGGTGGATGTCTGCTGT
TGGTATTTGACGACGATGATGGTGGCGGTGGTATTCGACGCAGCCGGCAG
CTGCGCATTCGCTCATGGGCTCGGCGAACTTAGACACCCAACGCTCGACG
ACGGAGCGTGAGTTGACAGAATGGTGCCGTCGATAGTCCCGTTTTTGTTG
TTATTGTTGCTGTTGCTGCTGTTGCTGCTGCTGTTGTTGATGTCGTTGTT
GCTGTTGCTACTGCTGTTGTTGTTGTCGTGTGCTGTTGTCGGTGGTGGTG
TTGGTGCTTTTGTTGTTCCGTCTTCGCAACGAAAACCGTACCGTCCTCCA
TCGAGAACCTCATCAACTTTCGAAGCACTCCTCAAAGTAGTGAGATACGA
GATAAGTTCGCAGCTACGATCAGGTAAACACCAAAAGTACGAAATGATTA
ACTTTAAACTGGGGATTTAACGTCGTGTATTTCGTCTACGCTCACACGAA
GGAACCTGCGTGTGTTGTGTGTGGGAGAGTATCCGCACCTGAGTCCATTC
TTCCTGGTACCGCCGTAAACCAGATGTTGACGGTAGCATCACGACGGCCA
TCCCTGTACACTGTCCACCTGATCTTACCTGCCCTACGTTTACATAGACA
CAATACGTGTGTGCGTGTGCGGATCTGGCATCATCACTCCATCCACCCGA
TTTTAACACACAGAAGTTGCCCGACACGTGTACAAAAGTATGTTGTGATC
GATTCATATGGTACATTTTTTCAGGATTGCCAAAAGCGTGAGCGAAGACA
GCGAGTCGTGTCCGTCCCCCCTGGACGTCGTGTCTCCCTCCTCCCGCCGT
TGCGGGACGATTGGGCGGGTGCCGCCGTCCCCCTGCGATCGACGCCTCCC
CACGTTTGTGAGCCTCAGCACCGGCACCACCCCTGTGACGGGCGGCGGGC
ACTCGGGGCACTTTGCCTCTCCATCGATGCGCCGCACCTACGGTAATAAC
AGCATGCACCGACCACACTTTTTTTTTGTACCACCTTTTTTTCGTTGGGG
GGAGAGATCCCACACTGCTTTGGTTGCACTAGTGCTGTACGTTTGGTTGC
ATGCATTCTACACGACGTAGCCGCATCTACGACATCGACGCGAATGGGTC
GATTGACGATGCGGAGTTCTGTCGTCGTACACGAGGGTGTCATATCTCTC
GGCCGTCAGTTATTGCTGCTCGAATTTCACAACAATTTTGAAAGCACTTT
GACTTGTGCTGATTGTTTACTTCGTTCTCGACATGATTTTGGCATGCCAG
GATACGCAAACGACCCGCAGCAGGGGACGACATGCCACCGGCGCACCCAA
TCTTTTCCCTCGCCGTCGTCGGCCTTCTCCGACAGCTGCGGCTTTGGCGT
GGCCGTCGACGCTCCGCCGCTCTCTCCCGCCTCCTTTCATCGCGGCGGAG
TGAGCGCCTCCTCCCCCCTGTCGTCCTTCTCGGGACAACTGCACCACCGC
TTGTCGTCCACATCGTCGTCTGCTACTACCGGCGCCGTTACTGCCGGTGC
ACCCGCCGAGGCTTTCGCGGCATACTACGGAGGAGGACGGAGAGGAGGAG
GAGGAGGAGGGGGAGGAGGAGGAAAATACAGAAACTATGGGAGCGGTTGT
TCTTCTGCTGCGTCGTCTCCTGCTGGGGCAGATTCGGCCCCGCCGTCGCC
CGTCTCGTGGTCGCGCGAGGACTCCCAGAAGAAGCGAGTAGGCGGCGGCG
GCACTATCGGTCGTGCTGCCGCAGCGAACTGCATGACGATCGCCCCCCCC
TCCCGCTTCCTCACAGGAAGTACAGGAAACGGCGGCGGCAGCAGCAACGA
CTTGAGCTATCCCACGGCGGCGGCGGCAGCCGCTGCTGCTACTGCTACAC
GCGCCCCCTTCGACACGGTGGTCATGCTACCGGCGGCCTACGACAATCAA
ACAAGGTACGAGCAAGTAGGTGGTGGTGGTGGCGGTGGCGGCGACGATGG
CAGCGGTGGCAATTACCACCACCACCACCACCACCACCACCACCACCCCC
GAATTCACCCGTCTGTTTCCTCCCCCGGGGGAGCAGGAGGAGCGGCCTGC
AGTCCTTGGTCGTCTGTGGGGTGGGCACCGATGACCCAGCAGCTGGACGC
TATTCACAGGCACCAGCAACAGGGGGAAGGAGGTTTCATGGGTGGCGGCG
GCGGTGGCGGCGGGGCGGCACAACCG
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Coding sequence (CDS) from alignment at P-littoralis_Contig60:510065..514240+

>mRNA_P-littoralis_Contig60.112.1 ID=mRNA_P-littoralis_Contig60.112.1|Name=mRNA_P-littoralis_Contig60.112.1|organism=Pylaiella littoralis U1_48|type=CDS|length=861bp|location=Sequence derived from alignment at P-littoralis_Contig60:510065..514240+ (Pylaiella littoralis U1_48)
ATGCAGATGCTAGGGGAAAACATCCAGCAGAAGCCTAGAGGCAGACGTCC
TAGACGGCGGTCACGGTCTGGCGACGGTGTCGTCCTCGCCAATCGGAAGA
CCGAGATCTGCCTCCACTGGCAAACTGGATCTTGCCCTTATGGAGCCGGC
AGCTGCGCATTCGCTCATGGGCTCGGCGAACTTAGACACCCAACGCTCGA
CGACGGAGCGATTGCCAAAAGCGTGAGCGAAGACAGCGAGTCGTGTCCGT
CCCCCCTGGACGTCGTGTCTCCCTCCTCCCGCCGTTGCGGGACGATTGGG
CGGGTGCCGCCGTCCCCCTGCGATCGACGCCTCCCCACGTTTGTGAGCCT
CAGCACCGGCACCACCCCTGTGACGGGCGGCGGGCACTCGGGGCACTTTG
CCTCTCCATCGATGCGCCGCACCTACGGATACGCAAACGACCCGCAGCAG
GGGACGACATGCCACCGGCGCACCCAATCTTTTCCCTCGCCGTCGTCGGC
CTTCTCCGACAGCTGCGGCTTTGGCGTGGCCGTCGACGCTCCGCCGCTCT
CTCCCGCCTCCTTTCATCGCGGCGGAGTGAGCGCCTCCTCCCCCCTGTCG
TCCTTCTCGGGACAACTGCACCACCGCTTGTCGTCCACATCGTCGTCTGC
TACTACCGGCGCCGTTACTGCCGGAGGAGGGGGAGGAGGAGGAAAATACA
GAAACTATGGGAGCGGTTGTTCTTCTGCTGCGTCGTCTCCTGCTGGGGCA
GATTCGGCCCCGCCGTCGCCCGTCTCGTGGTCGCGCGAGGACTCCCAGAA
GAAGCGAGGGGAAGGAGGTTTCATGGGTGGCGGCGGCGGTGGCGGCGGGG
CGGCACAACCG
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