mRNA_P-littoralis_Contig6.307.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.307.1
Unique NamemRNA_P-littoralis_Contig6.307.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: D7FIK1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIK1_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 5.020e-122
Identity = 216/279 (77.42%), Postives = 233/279 (83.51%), Query Frame = 2
Query:  320 YVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVLEEDRIAHEDMEAGGEVNGSAATTRGEGVLMERPQQDGTRPSAIKHAVRMPV 1156
            YVILDYTVPGLGFV D L SFL WVEDNP  GA+AFA VY+FTTVCFIPGSLLTLGAGLVFGRALGTGLG++VGSLAVL GAT+G+ILAFLLGRFVLQ+QAQGLFNKFKVL AVNRAI+SQGLKLVILLRLSPVVPFSAFNYVMGVT V FRDYA+GCVGFIPGTVAFVFIGTTASGLLGDD E XXXXXXXXX          GGIATVIAVVL+SIY+KRALNKVLEEDR+  E +E G E              ME+  QDG RP+ ++HAVRMPV
Sbjct:   57 YVILDYTVPGLGFVADTLTSFLEWVEDNPGLGALAFALVYVFTTVCFIPGSLLTLGAGLVFGRALGTGLGILVGSLAVLAGATVGSILAFLLGRFVLQEQAQGLFNKFKVLKAVNRAIKSQGLKLVILLRLSPVVPFSAFNYVMGVTDVFFRDYAIGCVGFIPGTVAFVFIGTTASGLLGDDSEEXXXXXXXXXGTVQLIVGIVGGIATVIAVVLISIYAKRALNKVLEEDRVEQEALEMGLESGNGGMNN------MEQSAQDGARPAVVEHAVRMPV 329          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A7S2Y1P9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1P9_9STRA)

HSP 1 Score: 272 bits (695), Expect = 5.490e-82
Identity = 152/259 (58.69%), Postives = 193/259 (74.52%), Query Frame = 2
Query:  263 KKQKLIKAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGL---LGDDGEXXXXXXXXXXXXXXXXXXXX-------GGIATVIAVVLVSIYSKRALNKVLEE 1009
            KK+K+ K  L L+LV ++IYVI+DY+VP LG V+ +L  FL WVEDNP +G  AFA VY+F TV FIPGSLLTLGAGLVFGRALG G GV +GS AV++GA+IGAI+AF+LGR+VLQ  AQ LFNKFK++ AV++AI+SQGLKL +LLRLSPVVPF+AFNY+MG+TA+  +DY +GC+G IPGTVA+VFIG++ASG+    G+D E                           G IATVIAV L+S Y+K+ALN++L E
Sbjct:   20 KKEKIRKLCLGLVLVGLIIYVIVDYSVPSLGNVNIVLSDFLAWVEDNPIEGVFAFACVYMFCTVAFIPGSLLTLGAGLVFGRALGIGRGVALGSFAVILGASIGAIIAFILGRYVLQDTAQVLFNKFKIMRAVDKAIESQGLKLCLLLRLSPVVPFNAFNYIMGLTAISLKDYTIGCLGIIPGTVAYVFIGSSASGIGDMKGNDEEQNDNTKDADGEESSSDNDTVFLIVIIVGAIATVIAVFLISWYAKKALNRILNE 278          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A7S3YEX9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEX9_HETAK)

HSP 1 Score: 246 bits (629), Expect = 2.140e-72
Identity = 159/261 (60.92%), Postives = 192/261 (73.56%), Query Frame = 2
Query:  263 KKQKLIKAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGD--DGEXXXXXXXXXXXXXXXXXXXX---------GGIATVIAVVLVSIYSKRALNKVLEED 1012
            +K KLIK GL  LLV I+IYV+LDYT+P LG V+ IL SFL WVE++P +G +AFA VY+ TTV FIPGS+LTLGAGLVFGRAL                      +AFLLGR+VLQ  AQ LFNKF VL AV++AI+++GL+LVILLRLSPV+PFSAFNYVMG+T V FR Y LGCVG +PGTVA+VFIGT+A+GLLGD  DG     XXXXXXXXXXXXXXX          G  ATV+AVVL+++ S+RAL +VL ++
Sbjct:   44 RKNKLIKFGLLSLLVGIIIYVVLDYTLPSLGHVNRILTSFLLWVEEHPGEGVVAFASVYVLTTVLFIPGSILTLGAGLVFGRALXXXXXXXXXXXXXXXXXXXXXXIAFLLGRYVLQDSAQKLFNKFSVLKAVDKAIENEGLRLVILLRLSPVIPFSAFNYVMGLTRVMFRQYVLGCVGMLPGTVAYVFIGTSAAGLLGDADDGSQESEXXXXXXXXXXXXXXXRLVNIVVLVVGAAATVLAVVLITVASRRALRRVLMKE 304          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A7S4JVV3_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JVV3_9STRA)

HSP 1 Score: 207 bits (526), Expect = 7.990e-58
Identity = 113/271 (41.70%), Postives = 177/271 (65.31%), Query Frame = 2
Query:  263 KKQKLIKAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVLEEDRIAHEDMEAGGEVNGSAATTR 1075
            ++ ++ K  L L+L+  +++VI+D T  G  ++ D +++FL W+E+NP +G   F GVY+  TV F+PG +LTLGAG VF  A GTGLG+ VG+++V VGA++G++LAFL+ R++L++ A GL  KF +  A+++A++ +GLK++ILLRLSPV+PF+A NYV GVTAV F+DY+L     +PGT+ +VF+G +A  L                          G +  ++AV L S Y+K+ LNK+L+++  A+E + AGGE  G  +  R
Sbjct:   12 RRSRIKKLVLALVLIGFIVFVIIDSTTNG--YIKDGIQTFLRWIEENPIEGFFMFMGVYVLATVLFVPGLILTLGAGYVFSNAFGTGLGLFVGTISVFVGASLGSMLAFLISRYILREWAVGLTEKFPIFRAIDQALEEKGLKIIILLRLSPVIPFNALNYVCGVTAVSFKDYSLALFAMLPGTILYVFLGASAQSLA-------TIGSSTDSKALTISTVVVGVVLGIVAVALSSRYAKKELNKILDQEEEANERI-AGGEGEGGKSQDR 272          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A6H5JID7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JID7_9PHAE)

HSP 1 Score: 199 bits (505), Expect = 6.420e-54
Identity = 110/259 (42.47%), Postives = 160/259 (61.78%), Query Frame = 2
Query:  371 LKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVLEEDRI-AHEDMEAGGEVNGSAATTRGEGVLMERPQQDGTRPSAIKHAV 1144
            L++   W+EDNP  G + FA ++  +T+ F+PG LLT+GAG+ FGRALG G GV+ GS+AVL+GA +  ++AF LGR+VL +QAQ    ++++L+AVN AI+  G+K++ILLRLSP+VPFS FN++ G+T V  RDY LG VG +PGT+AFV+IG + +G + +                       G +A V+A+V V+IY++RAL + L E  + A+ D E   E  GSA              + G+ P   K AV
Sbjct:   93 LETSFEWIEDNPKAGVVVFALLFCLSTLLFVPGLLLTIGAGVAFGRALGFGFGVLWGSVAVLLGAVVACVIAFYLGRYVLHEQAQSCAKRYRILSAVNTAIERNGVKVMILLRLSPLVPFSGFNFIAGLTKVSLRDYLLGTVGIVPGTLAFVYIGASTAGTMNEQEAMNSGEADRTECIIRMATLIVGAVAAVLAIVAVTIYARRALKQALVESELDANADKEEKAEHEGSATDV-----------ECGSSPGEFKEAV 340          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A7S2A6Q3_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A6Q3_TRICV)

HSP 1 Score: 190 bits (482), Expect = 5.300e-51
Identity = 108/268 (40.30%), Postives = 167/268 (62.31%), Query Frame = 2
Query:  224 GASDNDTAPEP----PTKKQKLIKAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVLEEDR 1015
            G  DND+ P+       K+  L K  + L+LV +++++I+D    G  FV   ++  L W+E+NP +G   F  VY   TV F+PGSLLTLG+G VF  + G G GV++ +LAV VGAT+GA++AF+LGR++L+   + L  K+ V  A+++A++ +GL+++ILLRLSP++PF+A NY+ GVT+V F+ YA      +PGT+ FVF+G +A  L+ D G                     G +  VIA+ L S Y+K+ LNK+LE+++
Sbjct:   23 GGDDNDSWPKEVKACTDKRALLNKIIVGLVLVGLIVFIIVDSVTHG--FVKGAIEGLLQWIEENPIRGLFVFMAVYFVATVLFVPGSLLTLGSGFVFAESFGLGFGVLLATLAVFVGATLGALVAFILGRYLLRDWVENLTKKYNVFRAIDKALEEKGLRIMILLRLSPIIPFNALNYICGVTSVSFKHYAWANFAILPGTILFVFLGASAGSLV-DSGNGGDTPVVTIATIVV------GVVFGVIAIALTSRYAKKELNKILEQEK 281          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A7S2MII1_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MII1_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.090e-49
Identity = 102/247 (41.30%), Postives = 155/247 (62.75%), Query Frame = 2
Query:  263 KKQKLIKAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVL 1003
            +K +LIK  L LLLV  +IYVI+D+       +   ++SFL W+EDNP +G  AF GVY   T+ F PG +LTLGAG VF  ALG GLGVV+ + AV VGA+ G++ AFL+GR++L+    GL  K+ +  AV+ A++ +GL+++ILLRLSP++PF+A NY++GVT+V FRD+ +  +G +PGT+ +VF+G++A  L                          G +  ++ V + S Y+++ L  V+
Sbjct:   26 RKARLIKIALGLLLVGFIIYVIVDFATSK--HLRTAMESFLNWIEDNPTEGVFAFMGVYFVATILFAPGLILTLGAGFVFANALGLGLGVVLATTAVFVGASTGSMAAFLIGRYLLRDWVVGLTKKYAIFEAVDVALKEKGLRIMILLRLSPLIPFNALNYIVGVTSVSFRDFTIAMIGILPGTLLYVFLGSSAGSLTDSSS-------GGDNSAVRILTIVLGSVFGILGVCVTSYYARKELQNVI 263          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A0G4EY60_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EY60_VITBC)

HSP 1 Score: 185 bits (469), Expect = 4.870e-49
Identity = 120/278 (43.17%), Postives = 167/278 (60.07%), Query Frame = 2
Query:  281 KAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVLEEDRIAHEDMEAGGEVNGSAATTRGEGVLMERPQQDG 1114
            K  +FL+++ I++Y+I+D T      V + L  F  WV+DNPA G +A+  VY+  TV FIPGS+LTLGAG  F  A G G G+  G  AVLVGA +GA LAF  GRF+ +   QGL +KFKV+ A+++  ++QGLKL ILLRLSPVVPFSAFNY+MG T  ++RDYA+G +G IPGT  +V+IG   +      G+                    G +AT IAV +V+ ++++AL ++ E++  A E  +A G+          EGV    P  DG
Sbjct:   55 KLLVFLVIIAIIVYIIIDSTTGQR--VAEGLDIFKEWVQDNPATGILAYMAVYMVCTVAFIPGSILTLGAGFTFVCAFGNGPGMAAGIGAVLVGAFVGAQLAFFCGRFLFKSWVQGLTDKFKVMRAIDKVFETQGLKLNILLRLSPVVPFSAFNYIMGGTRTRYRDYAIGTLGIIPGTALYVYIGAIPAFAGACSGKAEGSGHWSQWVFLAV-----GLVATFIAVFIVTWFARKALREITEKE--AAEASKADGK----------EGVETPGPDLDG 313          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: W7TSR1_9STRA (SNARE associated Golgi protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TSR1_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.130e-48
Identity = 109/261 (41.76%), Postives = 162/261 (62.07%), Query Frame = 2
Query:  278 IKAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQS-QGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVLEEDRIAH---EDMEAGGE 1048
            ++ G+ +L +++VI + +DY+  G   V  +L +FL WV  +P +GA+AFA VY  + V F+PG+ LTLG G +FG+ALG G G V  SLAV VGA+ GA+ AF LGR++L + AQ   N++ +L A++ ++   +GLK+V+LLRLSP+VPF+A NY+M VT+V  + Y LG VG +P  VA+ F+GTTA GL  + G                     G +A V AV ++S +++  L K+ +E   A     D+E GGE
Sbjct:   50 LQGGILVLWLVVVILIAVDYSPAGHRHVARVLSTFLEWVGRHPLRGAMAFAAVYALSVVFFVPGAALTLGGGFLFGQALGVGPGTVFASLAVFVGASAGAVAAFSLGRWLLHETAQSTLNRYTILRALDASLHGHRGLKIVLLLRLSPLVPFTALNYMMSVTSVSLKTYTLGLVGMVPAVVAYSFLGTTAGGLTREAG-----GESSVERGVKIAMYVVGAVALVAAVGVLSRFAREELRKIQDEGEGARGEGRDVEGGGE 305          
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Match: A0A7S4W131_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W131_9STRA)

HSP 1 Score: 181 bits (460), Expect = 6.340e-48
Identity = 109/279 (39.07%), Postives = 163/279 (58.42%), Query Frame = 2
Query:  254 PPTKKQK-LIKAGLFLLLVIIVIYVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPGSLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQAQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVKFRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEXXXXXXXXXXXXXXXXXXXXGGIATVIAVVLVSIYSKRALNKVLEEDRIAHEDMEAGGEV---NGSAATTRG 1078
            PPT ++  L K G  L+LV  +IYVI+D           I+  FL W+EDNPA G  AF GVYI  ++ FIPG +LTLGAG VF  ALG G+G+ + ++AV  GA  GA  +FL+GR++L+     L  K  +  A++ A++ +GL+++ILLR+SP+VPF+ FNYV GVT++  RDYA+G +G +PGT+ ++ +G++A  L+                         G +  V+ V   + Y+K+ LNK+L + R  +      G+V   NG  A+T G
Sbjct:   19 PPTSRRAFLFKIGFGLILVGFIIYVIIDLATTKNTM--RIVADFLDWIEDNPAAGVFAFIGVYIIASIFFIPGLILTLGAGFVFANALGLGVGIFLATVAVFFGAFFGACASFLIGRYLLRDCVGKLTKKRVIFEAIDAALKDKGLRIMILLRVSPLVPFNVFNYVAGVTSISLRDYAIGMIGILPGTLLYILLGSSAGSLVDSSSSGNDSTVRIISIVL-------GIVFAVLGVYATTYYAKKELNKILSQRREVNAAASTEGDVDSSNGKGASTIG 288          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FIK1_ECTSI5.020e-12277.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2Y1P9_9STRA5.490e-8258.69Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S3YEX9_HETAK2.140e-7260.92Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S4JVV3_9STRA7.990e-5841.70Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A6H5JID7_9PHAE6.420e-5442.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2A6Q3_TRICV5.300e-5140.30Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2MII1_9STRA1.090e-4941.30Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A0G4EY60_VITBC4.870e-4943.17Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
W7TSR1_9STRA1.130e-4841.76SNARE associated Golgi protein n=2 Tax=Nannochloro... [more]
A0A7S4W131_9STRA6.340e-4839.07Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:1261812..1267294 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIK1
PFAMsSNARE_assoc
Model size2141
Max annot lvl2759|Eukaryota
KEGG rclassRC00046
KEGG koko:K00486
KEGG ReactionR01960
KEGG Pathwayko00380,ko01100,map00380,map01100
KEGG ModuleM00038
Hectar predicted targeting categorysignal anchor
Exons4
Evalue2.07e-128
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota
EC1.14.13.9
Descriptioncanonical Wnt signaling pathway involved in osteoblast differentiation
Cds size990
COG categoryO
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.307.1prot_P-littoralis_Contig6.307.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 1261981..1266312 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791245.4373412-UTR-P-littoralis_Contig6:1261811..12619801680791245.4373412-UTR-P-littoralis_Contig6:1261811..1261980Pylaiella littoralis U1_48UTRP-littoralis_Contig6 1261812..1261980 +
1680791245.5059721-UTR-P-littoralis_Contig6:1266312..12672941680791245.5059721-UTR-P-littoralis_Contig6:1266312..1267294Pylaiella littoralis U1_48UTRP-littoralis_Contig6 1266313..1267294 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791245.4562654-CDS-P-littoralis_Contig6:1261980..12621511680791245.4562654-CDS-P-littoralis_Contig6:1261980..1262151Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1261981..1262151 +
1680791245.4704707-CDS-P-littoralis_Contig6:1264753..12649691680791245.4704707-CDS-P-littoralis_Contig6:1264753..1264969Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1264754..1264969 +
1680791245.4827313-CDS-P-littoralis_Contig6:1265229..12654231680791245.4827313-CDS-P-littoralis_Contig6:1265229..1265423Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1265230..1265423 +
1680791245.4925058-CDS-P-littoralis_Contig6:1265903..12663121680791245.4925058-CDS-P-littoralis_Contig6:1265903..1266312Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1265904..1266312 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.307.1

>prot_P-littoralis_Contig6.307.1 ID=prot_P-littoralis_Contig6.307.1|Name=mRNA_P-littoralis_Contig6.307.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=330bp
MNDSMISSNREQHSIAVTGASDNDTAPEPPTKKQKLIKAGLFLLLVIIVI
YVILDYTVPGLGFVDDILKSFLTWVEDNPAQGAIAFAGVYIFTTVCFIPG
SLLTLGAGLVFGRALGTGLGVVVGSLAVLVGATIGAILAFLLGRFVLQQQ
AQGLFNKFKVLTAVNRAIQSQGLKLVILLRLSPVVPFSAFNYVMGVTAVK
FRDYALGCVGFIPGTVAFVFIGTTASGLLGDDGEEEETDDNGSNGTVQLI
VLIVGGIATVIAVVLVSIYSKRALNKVLEEDRIAHEDMEAGGEVNGSAAT
TRGEGVLMERPQQDGTRPSAIKHAVRMPV*
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mRNA from alignment at P-littoralis_Contig6:1261812..1267294+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.307.1 ID=mRNA_P-littoralis_Contig6.307.1|Name=mRNA_P-littoralis_Contig6.307.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=5483bp|location=Sequence derived from alignment at P-littoralis_Contig6:1261812..1267294+ (Pylaiella littoralis U1_48)
CCCTTTTTCTCCCCACCGACCGAAAAAGAAGAAAGAGAAACAAGCCCGCT TGCAACGCTACAGCTGTCCTCCTAAGCCCAAAGACCAGCAGCTCAGCACA AATAGCAGCAGCAACAGCAACAGCCCCAGTAGTAGCAGCTACAACAAGAG CTACGAACAGAAGCAACAGATGAACGACTCCATGATATCGTCGAACAGGG AACAGCACTCCATCGCTGTGACGGGCGCCAGCGACAACGACACCGCCCCA GAGCCGCCTACGAAGAAGCAGAAGCTCATCAAAGCTGGTCTGTTCTTGCT GCTTGTGATCATAGTGATCTACGTCATCCTAGATTACACGGTGAGAGGTC CACGTCCATCTCTTATGAACCAGCACCAGTCCTCTCGTCTATTATAGACT GCTGCACCGGTATCGTTTGGATATAAATTTTGTTTTACAGCACTCCCCCT GGTTTGTACAGCCACGTCGTACTCGTATATACTCCGTACCTGGTGTACAG CAGTATCACGTACGGAGTACCAGGTACCAGATATGGCACTTCGTATATAC TGGTACGGAGGTATATACGAAGTGATTTTTCAGCCCTTCTGCCGTTTGCC CTTTCACGTTCGCGTGCTTGCGCTGCCTGAAACTGTCAGCTCGAAACTGT TGCTGGGCCGGTAAAGAGATTAGCACGCCCGACGTCCATTTTTATCGACA CCTTGGCAACTAAGTTTCGGCCTCCTTGTCACTTTTGTCGCCTTTTTTAC TCTTTATTTCGTGTTGTGACTTGGCTCTGGATCAGGCTTCCTTTTCTGCG TTTCCTGTTGTATTTTTGTATAGCGTTGTGTGATATTTCGGGGTCCGTTT TGTTTTGCCTGAGTTTCCTTGTCGTGCCTTTGGTGGATTGAGGGAATCTC CGGCGTACAATATACATACATACCTAGTTTGGGGCAAGCAGCCTGTGACC ACGGAAATCGTCCCTGATCGGTGGAGTACGGACATTAACAGGTATTGAGG AGAGGTCGGAATAGTTTTTAATGTGAAGATAACAAAACAACAACAACAAA CAACACTAGTGGATCGAGGGGCTAGGTTTTTTGTTTTGTCGTATACCAGG TGTATGATACTGCATCTGATACATACTCAAATACGTTCCCGAGCCCGGGG TTGGTTGCCTGAAGGTTGCTGCTGCTTGCTGCTGCGTGTGTGAGACGCAA GTAAGTACCACGTATGAGTATTTTGATGTGCGACGGCAGACAACAAAGAT AAAGTAGTAGCAGTGAACACAGCACAGCTATCATAGCTGAGCACAGCTAG CTGGACTCTTGATAACAAAGTTGTGGTGGGAGAGACACAAGCAAGCAAGT ACTCCTAAAGACACCATCTACTCAAGCAACCAAAGTGTGTTTGCGTGTAT CGCTGCCCTCTCTCGCTTTCTCACTAGAAAAGCAGCAGCAGCAGTAGTCG AACCTGCCCCTCTGCCCCCACACACAGCAGCCTTGCTTCGTCACCATCAG CCGCACTAGATACTACTTGTGCCAAACTCCCTCCCTCTCCGGCCCTCTCC GGCTAGTGTGTTGTTGTGTGTGCGTGTGCGTGTATTGGGTGGTGTGAGAT GTGCGTGTTGTGTGTCTCTCACTCACTGCTGCTGCCGTTGGTGGTGTGAT GGATGAGTGGTGAGATGTGTACACACAACACACAAGACCCACAACGAAGA AGATCCTTGGTAAAAAATAAATGCCTCCAGTATTTGTTTCGGGTTGGAGG GGACGGGTAAGGGCGATCAAATACAGACAAATCCACAGGGATCTCGGCGA ACTCAGCACGCAATGGGCGGAGACAAGTTGAAGGTAGGTCGTGCTAATTT TGCTCTGTCCTCCACACTTTTATCATTCGGGAAGTGGTTGGGTATTGGGT GAGTGATGAGTCAAAAGGAGGGTATTTCAAATCCGTGCGTACGATCGAAC GAACGAACGAACGAACGAACGAAGGGACAGCCATCGCAAAAACCCTCACC CCCGGCACACATTTCGTTTTTTTTGCGCGCATATGTATGAAGGCGAGGAA AAAAAAAGATGACAAAAATAAGTCGTTTTTTTTCTGAGTAGAAAAGAAAG GAAGAAAAAAAACAAACCCGCGATTTTCTTTTTTCTCACAACACCAGAGC CTGCCTTCGGCCTGTTGAATTGTTTCGGCGAAGACTCGTTTTCAGTGTAT CGCATCCAAGTCCTTGGAACGTACTTCTATTTACAAATGTGCCGTTTACA ACTTTTGAAATAACCCGTCTTTCATCGAGTTTCGTGAGCAACGAGGAGTA ACGCGGATGCTGCTGTAGCGACCCTGAATGCTTCCAGCACACAGCCTCCG AAAATCAGAGCAGACGTGGGTACTTGCGACCACTATTTCAGCAAAACGCG CTCATGACTGATCCCAACCATCGATTCAGTGCCGTAGATACCCACGTATG CCCGTTTTCTCAAGTGCTGCGTGCTGGAATATATCAAAATAAATACGGCC GCATACAAAATGAAGAACGAACCACTGGTGAAGCAGAGCAAGGTCTCGAG TTTGCATCCTGTCTAATGATCCCGTATGCCGAAAAGAGAGTGTGCCCTGA TGTCCAGGGGTTTCAGCATGTACCGGACACTTTGGTTGTGGTGGTCCTTG TGTGCTACTAGGTGTATTGGCCGCTTTCGCTGCTCTATCTCCGACGGCCA GGACAAAGGGTTCCACATAGTTTTGCACTAGGCACATTATTGGAACTGCG CTCGAACCTAGTATCATACCCAATGAGTATTGTCCGATGTTGTCCGACAG GAGAGTCCGAAATACTCTGTGCGTGTGGAAATACCCCTCAATCAGCGGTA GGCACCTAGCTCTGTCACACGAAGTAAGGACGCGGCAAAAATAACGCCTG TGCCTCCCGTTTCACTCTGCTTTGCTGCCTTCGTCCGCCCAGGTTCCTGG ACTGGGCTTCGTCGACGATATCCTCAAGTCCTTCCTCACGTGGGTCGAAG ACAACCCCGCACAGGGCGCGATAGCCTTCGCCGGTGTGTACATCTTCACC ACCGTGTGCTTCATCCCCGGGTCGCTGCTCACGCTAGGCGCAGGGCTGGT GTTTGGCCGCGCACTGGGGACTGGCCTGGGCGTGGTGGTCGGGTCTCTGG CAGTGCTGGTGAGCAGTTGTTTTCTGAAGCCTCCTGCCTTATATTTTTAT CTTCACGACAGAATTGCGCCTTTAGGTATTCGTTGTCACTTGCCTTTATA CCATCAGGTATATCTCACCCCACGTAGGCATCACCTTCCGCCGTGTTTCA CATGTATGGTAGCCCTCTGCGTTTGCGCCGCCTTCTGTTGTCCTCAATAG TGCTCTATTTCGAAGAACTTTTCACACCAACACCCACACTCACCCACAAA CACACAAAAAATGCGCAGGTCGGTGCCACGATCGGGGCCATCTTGGCGTT CCTGCTGGGCCGCTTCGTGCTCCAGCAGCAGGCCCAGGGGCTGTTTAACA AGTTCAAGGTGCTCACGGCTGTCAACAGGGCCATCCAGTCGCAAGGCTTG AAGCTCGTGATTCTCCTCCGGCTCTCTCCCGTCGTGCCGTTCAGCGCCTT CAACTACGTCATGTGAGAATATGCGTCATGTTTACTGCTGTATTTGTGGC GCACGGGTATTGCACTGTCCCGAAATACGAACCATCACTGGGATTCCTAT CCTCTAGCAAAGGGCTAATTTTTTTGCAGGCTAAGGTTTTGCCCAAAGTC CTGATAGTTTGGGCGTCCCTGCGTGGGAGGTCAACGGGTGGAAGAGGGGG TAGGGTGACCGTGGCGATGAAAATGATTTCGTCGAACAGGAAGACGAGAA CTTCTTGATGGTGTGTGTGGTACATACATACGCTAGCCGCGTAGAGTATG AGTAGGTGAGAGGGAGAGAGAGAGAGAGAGAGGCAGACAGACAGATAGAC AGACAGTTGGGCAGAGAGAGACGGAGGAACTGATCAGCCCCCCCGCCCAA AACTGTACTAGTACAAGGCAGGACGTTCGATTCTCACCCGCCCTCTCGCC CCCTCCACCCGTCCGCGTCCACGCTCCTCTTGCTCTTTTCAGGGGTGTCA CGGCGGTGAAGTTCCGGGACTACGCCCTCGGCTGCGTGGGCTTCATTCCC GGTACGGTAGCGTTCGTCTTCATCGGCACCACGGCGTCGGGCCTTTTGGG AGACGACGGGGAGGAGGAAGAGACGGACGACAACGGCAGCAACGGCACGG TACAGCTCATCGTGCTCATCGTGGGGGGCATCGCCACCGTCATCGCGGTG GTGTTGGTCAGCATCTACTCCAAGCGCGCCCTGAACAAGGTGCTCGAGGA GGACAGAATCGCGCACGAGGACATGGAGGCGGGTGGGGAAGTTAACGGCA GCGCCGCTACCACCCGCGGAGAGGGTGTGTTGATGGAGCGACCTCAGCAG GACGGGACTCGGCCGTCCGCGATAAAGCACGCGGTTCGCATGCCGGTTTA AATTGTTTCAAACATTTTTTTTATGTGTCTATTGCAGAAGTAGGCAAAGT ACACAGTTCGTACGCGGGAGTCCTGTTGGGTAGTGGGTACTCTGTGTTTT GCCTTCTGACAGTGTATCGTTACAGAATGCCATGTGCTATTCATGACATT TGTCATCAGTCATGTTTTTCGTTGTATTTTTTGTGAAAATCGGGATGTTC GCGCGGTTGAAGTTAGTTCTGGGAAGGCACGGAAACCAGAGTACAAGCAG AGTAGGGTCACTTCGGAAAAATTCCAGAATTTAGTAAGTCGGGTACATCG AGTCGCTCGGACTTTTGGGGATTTAGCGCATTGGGTACATCGAGTCATGG GGCAGAGTTGGATGCCTTGGAGTTTACTCTTCTTGTACTTGATTTTCGTT GCGTGTGAGTTTGGTTTCCGAGTGGAGTCGCGGGCATTGATCGTGAGCAG TCTAGAAGTGTCGTCGCTGTTGTTGGCGCGACGTCGTTTGTGCCGCGATT ATCTCCTCGTGCCCTTAGCGATAGCAGATTAGCTCTCGCTCGTGTTTGGA ATAACGTTTTTTTAGCCGAGTTGTGAATAGGTACCTGCACAGTACCGTTT GTTTCTGCTGGCCCCTCATGCCCCTTCAGGGCTTTCATGGGTACGAGTGT ACATACAGTAGATGCAGTGATAATGGTATTTAAAACAACAGTGATGATGA GAATGATGATGAGAATGATGATGGTGATGCTGGTGATATTGCCATGTGAT CGAATAATTCACGCATGGCAGGTCATTTAGACGTTGATCTACATAGACAT GTGCACCAGAAAATTCACAAGTGTCTGGCCTGCCTGGGTCGATCGACTTT GATGACACCAGCCATATATTTATAAAAAAAAACAGACGCAAATACCTGGG TTGTTGTTTGCGTAGGTAGTATTGGCCGATAGAACGTGCGTCCAAATGTC TACGGGATCTGACTACAAAATACAAAATACCGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:1261812..1267294+

>mRNA_P-littoralis_Contig6.307.1 ID=mRNA_P-littoralis_Contig6.307.1|Name=mRNA_P-littoralis_Contig6.307.1|organism=Pylaiella littoralis U1_48|type=CDS|length=990bp|location=Sequence derived from alignment at P-littoralis_Contig6:1261812..1267294+ (Pylaiella littoralis U1_48)
ATGAACGACTCCATGATATCGTCGAACAGGGAACAGCACTCCATCGCTGT
GACGGGCGCCAGCGACAACGACACCGCCCCAGAGCCGCCTACGAAGAAGC
AGAAGCTCATCAAAGCTGGTCTGTTCTTGCTGCTTGTGATCATAGTGATC
TACGTCATCCTAGATTACACGGTTCCTGGACTGGGCTTCGTCGACGATAT
CCTCAAGTCCTTCCTCACGTGGGTCGAAGACAACCCCGCACAGGGCGCGA
TAGCCTTCGCCGGTGTGTACATCTTCACCACCGTGTGCTTCATCCCCGGG
TCGCTGCTCACGCTAGGCGCAGGGCTGGTGTTTGGCCGCGCACTGGGGAC
TGGCCTGGGCGTGGTGGTCGGGTCTCTGGCAGTGCTGGTCGGTGCCACGA
TCGGGGCCATCTTGGCGTTCCTGCTGGGCCGCTTCGTGCTCCAGCAGCAG
GCCCAGGGGCTGTTTAACAAGTTCAAGGTGCTCACGGCTGTCAACAGGGC
CATCCAGTCGCAAGGCTTGAAGCTCGTGATTCTCCTCCGGCTCTCTCCCG
TCGTGCCGTTCAGCGCCTTCAACTACGTCATGGGTGTCACGGCGGTGAAG
TTCCGGGACTACGCCCTCGGCTGCGTGGGCTTCATTCCCGGTACGGTAGC
GTTCGTCTTCATCGGCACCACGGCGTCGGGCCTTTTGGGAGACGACGGGG
AGGAGGAAGAGACGGACGACAACGGCAGCAACGGCACGGTACAGCTCATC
GTGCTCATCGTGGGGGGCATCGCCACCGTCATCGCGGTGGTGTTGGTCAG
CATCTACTCCAAGCGCGCCCTGAACAAGGTGCTCGAGGAGGACAGAATCG
CGCACGAGGACATGGAGGCGGGTGGGGAAGTTAACGGCAGCGCCGCTACC
ACCCGCGGAGAGGGTGTGTTGATGGAGCGACCTCAGCAGGACGGGACTCG
GCCGTCCGCGATAAAGCACGCGGTTCGCATGCCGGTTTAA
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