mRNA_P-littoralis_Contig6.133.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.133.1
Unique NamemRNA_P-littoralis_Contig6.133.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig6.133.1 vs. uniprot
Match: A0A6H5L4H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4H4_9PHAE)

HSP 1 Score: 285 bits (729), Expect = 7.360e-91
Identity = 177/299 (59.20%), Postives = 213/299 (71.24%), Query Frame = 1 
Query:    1 IRTFKITGPKLLVPTCRRDIVEKLGLFITDGECSCLLWESIAGRLQRWSVPPRLARVLRKCLADLPGDRVSTMAEVCKLLRGIAAGDAHDEGETAAVSTAKDDG--EKAASERLRTGMVLSEIGVCLCSRGQIEEAERYYKMALLSSDNVVEAFYNLGLLYIKPAFSKFQEAQQVFDAATERMSDRNPYRKASIEHSRAAKRKSNYYQSQEMMRALSGKYGSDSSKGSRDRGSMGAGGXXXXXXXARTIGEPARENHIKRDGSPGISHRQSFPPDQQKV-SSSFKSRGSPSRASASDAT 888
            IR FKI GP +LVPTCRRDIVEKLGLFITDGE SC LW SIAG LQRWS+P  LA+VLR+CLAD P DR S+M EVC+LLRGIAAGD   + E +AVS A D       AS+RLRTGM+L++IGVCLCS+G+ EE+ERYYK+ALLSS+ V EA            F+KF+EAQQ+FDAATERMS  +P RK SIEHS+AA+RKSNY+QSQE+M+ALSG Y   SS  SRDRG      XXXXXXX          + +  + + G + + SF P+Q+   S+S KS G   R+SAS AT
Sbjct:   73 IRAFKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLWHSIAGGLQRWSMPFSLAQVLRRCLADSPKDRFSSMEEVCRLLRGIAAGDGGRDDEDSAVSAASDYSCDPDVASDRLRTGMILNDIGVCLCSKGETEESERYYKLALLSSEGVFEAXXXXXXXXXXXXFNKFREAQQMFDAATERMSHGDPRRKFSIEHSKAAERKSNYHQSQEIMKALSGSYNCVSSNSSRDRGXX----XXXXXXXXXXXXXXXXXSGVMSESADGDNRQASFLPEQKHAGSTSVKSLG---RSSASSAT 364
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BLAST of mRNA_P-littoralis_Contig6.133.1 vs. uniprot
Match: D8LN11_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN11_ECTSI)

HSP 1 Score: 227 bits (578), Expect = 2.440e-63
Identity = 116/168 (69.05%), Postives = 137/168 (81.55%), Query Frame = 1 
Query:    1 IRTFKITGPKLLVPTCRRDIVEKLGLFITDGECSCLLWESIAGRLQRWSVPPRLARVLRKCLADLPGDRVSTMAEVCKLLRGIAAGDAHDEGETAAVSTAKDDG--EKAASERLRTGMVLSEIGVCLCSRGQIEEAERYYKMALLSSDNVVEAFYNLGLLYIKPAFSK 498
            IR FKI GP +LVPTCRRDIVEKLGLFITDGE SC LW+SIAG LQRWS+P  LA+VLR+CLAD P DR S+M EVC+LLRGIAAGD   + E +AVS A D    E  AS+R+RTGM+L++IGVCL S+G+ EE+ERYYKMALLSS++V EA+YNLGLLY   AF+K
Sbjct: 1675 IRAFKIDGPHMLVPTCRRDIVEKLGLFITDGELSCKLWDSIAGGLQRWSMPFSLAQVLRRCLADSPKDRYSSMEEVCRLLRGIAAGDGGRDDEASAVSAASDYSCDENVASDRVRTGMILNDIGVCLSSKGETEESERYYKMALLSSEDVFEAYYNLGLLYSTAAFNK 1842
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.133.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L4H4_9PHAE7.360e-9159.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN11_ECTSI2.440e-6369.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:497517..500076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LN11
PFAMsPBD,Pkinase,Pkinase_Tyr
Model size951
Max annot lvl2759|Eukaryota
KEGG koko:K04409,ko:K13412,ko:K19833
KEGG Pathwayko04010,ko04011,ko04012,ko04014,ko04024,ko04062,ko04360,ko04392,ko04510,ko04626,ko04650,ko04660,ko04666,ko04810,ko05120,ko05145,ko05205,ko05211,map04010,map04011,map04012,map04014,map04024,map04062,map04360,map04392,map04510,map04626,map04650,map04660,map04666,map04810,map05120,map05145,map05205,map05211
Hectar predicted targeting categoryother localisation
GOsGO:0000188,GO:0001932,GO:0001933,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0006464,GO:0006469,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0008150,GO:0008152,GO:0009267,GO:0009605,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010468,GO:0010563,GO:0010605,GO:0010646,GO:0010648,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019220,GO:0019222,GO:0019538,GO:0023051,GO:0023057,GO:0030587,GO:0031152,GO:0031323,GO:0031324,GO:0031347,GO:0031399,GO:0031400,GO:0031667,GO:0031668,GO:0031669,GO:0032101,GO:0032268,GO:0032269,GO:0032502,GO:0033549,GO:0033554,GO:0033673,GO:0036211,GO:0042325,GO:0042326,GO:0042578,GO:0042594,GO:0043086,GO:0043170,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043412,GO:0043549,GO:0043900,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044764,GO:0045859,GO:0045936,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051174,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0051703,GO:0051704,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070372,GO:0070373,GO:0071496,GO:0071704,GO:0071900,GO:0071901,GO:0080090,GO:0080134,GO:0090702,GO:0098630,GO:0098743,GO:0099120,GO:0140096,GO:1900424,GO:1901564,GO:1902531,GO:1902532
Exons5
Evalue4e-64
EggNOG OGsKOG0578@1|root,KOG0578@2759|Eukaryota
EC2.7.11.1
DescriptionRac GTPase binding
Cds size951
COG categoryF
BRITEko00000,ko00001,ko01000,ko01001,ko03036,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791236.4647367-CDS-P-littoralis_Contig6:497516..4978401680791236.4647367-CDS-P-littoralis_Contig6:497516..497840Pylaiella littoralis U1_48CDSP-littoralis_Contig6 497517..497840 -
1680791236.4843993-CDS-P-littoralis_Contig6:498579..4987091680791236.4843993-CDS-P-littoralis_Contig6:498579..498709Pylaiella littoralis U1_48CDSP-littoralis_Contig6 498580..498709 -
1680791236.4950466-CDS-P-littoralis_Contig6:499083..4992141680791236.4950466-CDS-P-littoralis_Contig6:499083..499214Pylaiella littoralis U1_48CDSP-littoralis_Contig6 499084..499214 -
1680791236.514167-CDS-P-littoralis_Contig6:499595..4997821680791236.514167-CDS-P-littoralis_Contig6:499595..499782Pylaiella littoralis U1_48CDSP-littoralis_Contig6 499596..499782 -
1680791236.5258224-CDS-P-littoralis_Contig6:499897..5000761680791236.5258224-CDS-P-littoralis_Contig6:499897..500076Pylaiella littoralis U1_48CDSP-littoralis_Contig6 499898..500076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.133.1prot_P-littoralis_Contig6.133.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 497517..500076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.133.1

>prot_P-littoralis_Contig6.133.1 ID=prot_P-littoralis_Contig6.133.1|Name=mRNA_P-littoralis_Contig6.133.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=317bp
IRTFKITGPKLLVPTCRRDIVEKLGLFITDGECSCLLWESIAGRLQRWSV
PPRLARVLRKCLADLPGDRVSTMAEVCKLLRGIAAGDAHDEGETAAVSTA
KDDGEKAASERLRTGMVLSEIGVCLCSRGQIEEAERYYKMALLSSDNVVE
AFYNLGLLYIKPAFSKFQEAQQVFDAATERMSDRNPYRKASIEHSRAAKR
KSNYYQSQEMMRALSGKYGSDSSKGSRDRGSMGAGGGAGGGAGARTIGEP
ARENHIKRDGSPGISHRQSFPPDQQKVSSSFKSRGSPSRASASDATHRSG
MDVAEVSRSLQSMSRER
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mRNA from alignment at P-littoralis_Contig6:497517..500076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.133.1 ID=mRNA_P-littoralis_Contig6.133.1|Name=mRNA_P-littoralis_Contig6.133.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2560bp|location=Sequence derived from alignment at P-littoralis_Contig6:497517..500076- (Pylaiella littoralis U1_48)
ATCCGTACTTTTAAGATAACTGGACCTAAGCTGCTGGTGCCCACGTGCCG
CCGAGACATTGTGGAAAAGCTAGGACTTTTCATCACCGACGGGGAGTGTT
CGTGCTTGCTCTGGGAGAGCATCGCCGGAAGGCTGCAGAGGTGGAGCGTC
CCCCCGCGCCTTGCGCGGGTTTTGCGGAAGTGAGTGTGGTACATATTAAA
GACGAGTCGGTTACCTTTCGTATGCGATGGTGAAACTAGGCCCAGGCAAG
CGGCGATCAAGGCCTGTGCTGACAATGTGTGTCGCAAATTGCAGGTGCCT
GGCCGACCTTCCGGGCGACCGGGTATCGACGATGGCCGAAGTTTGCAAGC
TTCTCCGCGGAATAGCGGCAGGTGACGCACACGACGAAGGTGAAACCGCT
GCGGTGTCGACGGCGAAGGATGATGGCGAGAAGGCCGCGTCCGAAAGGTT
GCGCACGGGCATGGTTCTCAGCGAAATTGGGGTGAGCTTTATTGTAAACA
TTAACAAGCAGCAGTAAACACGCGTGAGAGTGAGGGTGCTAGCGTTCAAA
ACGGTGGGGGGCGTTGGAGAAGAAAAAAAAAGTTGCAGGGGGCGGCCAAC
AAAGACCTGTACTTTACCCCGACCCGGGCACGACACTGCTGTTGGCGTTG
AAAATAGCACTCATGTTATGGAAAAATTGACGCCCGATTTGGTTGTTAAC
CCGGGCAAAAATAAAGTTACCCTGCGCGCATGTTGGGCGCGTTTGACTAC
CAGAAACGTGAAACTAAACGTCGCGAGCTCAACCTCCCCATACATCATCG
TCATTACCTCTGATGCCGCAAATTAAGCAACTCCGGAAACGCATATCTAT
CCACTGCGCTAGGTGTGTCTTTGCAGCAGAGGTCAGATTGAGGAAGCAGA
GCGTTACTACAAGATGGCGTTGCTTTCGAGCGATAACGTCGTCGAGGCAT
TCTACAACCTCGGCCTGCTCTACATTAAACCGGCGTTCAGCAAGTGAGCA
AGATACACCCCTTCTCGCCTCTCGAGCATAGAAGTAGTACCACATTCATT
CCATATGTGTCCAGTCCCCACAGCACTGCTTGCCACTTTGCTGGCGTGCC
ACCAAACAAGTGTCTGTCCCATGATGTGAAAATACTCGTCTGTGTTCGCT
CAATGCTGTGTGCACATCGTCGGCCGTTTGACCTCAGCAATTGCTCCCGA
GAAATTCTATGCTGTGGGTATGAGCAGAAGAGCGTTTTGAAACATTCGTC
ACGACAACACCAACAACAACGGCAACAACCAACACCGCCGCCACTACCAC
CGCCACCACCACCATCATCGCACACATACTTTCGGCAATTTATCGGTTCA
TGACGTGTGACAACCAGATTCCAAGAGGCCCAGCAAGTCTTTGACGCCGC
CACGGAACGGATGAGCGACCGCAATCCCTACCGTAAGGCCAGCATTGAGC
ACTCTAGGGCAGCCAAACGCAAGTCTAACTACTACCAGTCCCAAGAGGTG
AGCCACACGAATACCGAGCCCCTTGGCTTCCAAAGTAGCAGTGATGTTAA
AGTGTTGTCGATACCACTCCATGTGCTGCTGCGTACACCTCGTCCATATG
GTACGCGATACTGTTTCACAACCTTCAGGTTTGGTGGCGAGCGATTGAGT
GAATGTGTGATGCTCCTACTTCTTGCTGTTTTTCTTTCAAAATACCTTGC
CTCCGAAGGCAAAAGCTGCCTAGCACGACCTGACTTTTTGGCACCCTGGC
AACCAGATTCTATTTATTTCGTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTGCCAACAACCGCGGTGTTAGGCCATATTGGTGTGTGGAAGCTGTTT
CTACAGTGAGTTCAACCTCCATCAACCTGGAGTACAACCGCGATTTTGTA
CCATATTGGTGTATTTAAGCTGTTTTTGCAGTGCGTTCAACCTCCCCCAA
CCTGTGAGTAGACCGCCGTACAATTGAAGCTTAAGACAACTGTTCCTGAG
AGTAATTGGTCGCTTTCCCATCGAAAGCGGTGGTACGGCTCGCACACACC
CTGTGCCTCACTCGCGGTGCGCATGCCTTGGTCAACATAGGGTTACAGGG
TTGTCAAAGTTTTGTCTGGCTCAAGATTCACCGCCCCAATCAAGCACAAG
ACGCCAACCGCACACGAGCATCGTGAGCGTATCGTCCACGATGAAGCAAA
CATGTTTTCTTGCCCACTTTTTGTCGCCAACAACAGATGATGAGAGCGCT
CTCCGGTAAGTATGGCAGCGATTCCTCGAAGGGGTCTAGAGATAGAGGAT
CAATGGGAGCAGGAGGAGGAGCAGGAGGAGGAGCAGGAGCAAGAACAATT
GGTGAACCGGCAAGGGAAAACCACATTAAACGCGATGGTAGTCCTGGCAT
CAGCCATCGGCAGTCCTTCCCCCCAGATCAGCAGAAGGTCTCCTCGAGCT
TCAAATCGCGTGGCTCGCCGAGTAGGGCGAGTGCTTCGGATGCGACACAC
AGATCTGGGATGGACGTTGCTGAGGTTTCGCGGTCGTTGCAATCAATGTC
CCGAGAACGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:497517..500076-

>mRNA_P-littoralis_Contig6.133.1 ID=mRNA_P-littoralis_Contig6.133.1|Name=mRNA_P-littoralis_Contig6.133.1|organism=Pylaiella littoralis U1_48|type=CDS|length=951bp|location=Sequence derived from alignment at P-littoralis_Contig6:497517..500076- (Pylaiella littoralis U1_48)
ATCCGTACTTTTAAGATAACTGGACCTAAGCTGCTGGTGCCCACGTGCCG
CCGAGACATTGTGGAAAAGCTAGGACTTTTCATCACCGACGGGGAGTGTT
CGTGCTTGCTCTGGGAGAGCATCGCCGGAAGGCTGCAGAGGTGGAGCGTC
CCCCCGCGCCTTGCGCGGGTTTTGCGGAAGTGCCTGGCCGACCTTCCGGG
CGACCGGGTATCGACGATGGCCGAAGTTTGCAAGCTTCTCCGCGGAATAG
CGGCAGGTGACGCACACGACGAAGGTGAAACCGCTGCGGTGTCGACGGCG
AAGGATGATGGCGAGAAGGCCGCGTCCGAAAGGTTGCGCACGGGCATGGT
TCTCAGCGAAATTGGGGTGTGTCTTTGCAGCAGAGGTCAGATTGAGGAAG
CAGAGCGTTACTACAAGATGGCGTTGCTTTCGAGCGATAACGTCGTCGAG
GCATTCTACAACCTCGGCCTGCTCTACATTAAACCGGCGTTCAGCAAATT
CCAAGAGGCCCAGCAAGTCTTTGACGCCGCCACGGAACGGATGAGCGACC
GCAATCCCTACCGTAAGGCCAGCATTGAGCACTCTAGGGCAGCCAAACGC
AAGTCTAACTACTACCAGTCCCAAGAGATGATGAGAGCGCTCTCCGGTAA
GTATGGCAGCGATTCCTCGAAGGGGTCTAGAGATAGAGGATCAATGGGAG
CAGGAGGAGGAGCAGGAGGAGGAGCAGGAGCAAGAACAATTGGTGAACCG
GCAAGGGAAAACCACATTAAACGCGATGGTAGTCCTGGCATCAGCCATCG
GCAGTCCTTCCCCCCAGATCAGCAGAAGGTCTCCTCGAGCTTCAAATCGC
GTGGCTCGCCGAGTAGGGCGAGTGCTTCGGATGCGACACACAGATCTGGG
ATGGACGTTGCTGAGGTTTCGCGGTCGTTGCAATCAATGTCCCGAGAACG
T
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