prot_P-littoralis_Contig6.112.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig6.112.1
Unique Nameprot_P-littoralis_Contig6.112.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length918
Homology
BLAST of mRNA_P-littoralis_Contig6.112.1 vs. uniprot
Match: D8LL20_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL20_ECTSI)

HSP 1 Score: 1065 bits (2753), Expect = 0.000e+0
Identity = 644/926 (69.55%), Postives = 697/926 (75.27%), Query Frame = 0
Query:   16 MQLVLRSASLYPXXXXXXXXXXXXXXXXXXXXXXXTASVVACELMAVSESLDLAMLFRSNMICAVSLLDVPDAATPAAXXXXXXXXXXXXXXXXXXXXXXXXAGEEDPFNIVSFSANCEPRPGDDVIPSDSIPSKTPIKGLEFSPSGHSLLIWGESYVAVARLPRGSGSSGSSRSNISGVGNPTP---------NKYSSXXXXXXXXXXXXXSARWKWTLVDMSGYTVDVMRQRIVQASWHPASDSCVTLLTVGKGDVYVAVAKAGAKAFVMLHVPGRERPEQVLPIPDGSSLSPPVAFAHSHCAGWQRFAVWIARKDGSVGALCPVVPQSAKVDVEELWDLWSATSDTLVAARWEQXXXXXXTGLGSSQQESALAEEVSRLEQQQAWLRETFPHVFDAQDRGGTAAG-PAG-ALATRTPRHLVLQDRILAGRPEEDASAGPACGLVVLAGVGGGEGGDADEAAVAAPPPVALAVAYRAGCVDIALVPAGIGPRRWSERAGQRVSCATAA-----GETTAAAGAVLESLDLAERVTDKTARRRQGLSLSVSAGA-WTFLAATPCRLTSITVTWAGRIEMAAQRARQRAAAAAHGVSRSTE--RLDGDLRALLRERPDSAVNEVLFLPSSSAGRVVGVVPVASPIVGHLAMARLAGGKVEMVNLAVMTLQATEVASAAKRAEAQESPGRGDMLPRFETALQKAVNALDERRMAEPLGSSVGHLLMSQLDQEGVGVVEEQADRLVDGGIVVLEKLHLKTSTRLETLCEVYEHQAGLTKGLAKEVARLRSGQEDRAVTLEEINDMADEQRARSAGVLAVVQATRPDVSPAERAFMSEMKEMENYADRQQVMMEPATKQVEELRLAEEEAEDYLVREAQG-------TGLSERETRDVWNMLQADKERILNLSRRMEAARDRLAKLGVRE 915
            MQLVLRSASL+P XXXXXXXXXXXXX         TASVVA ELMAVS  L LAML RSN I AVSL+DVPDAA  A                           E+DPF+ VSFSA+C PRPGDDVIPSDSIP KTPIKGL+FSPSGHSLLIWGESYVAVARLPR + ++G S     GV   TP                           SARWKWTLVDMSGY VDVMRQRIV A+WHPASD CVTLLT GK DVYVAVA  GAKAFVMLHVPGRERPEQVLPIPDG ++SPPVA AHSHC GWQRF +WIA+KDGSVGALCPVVPQ+AKVD EEL  LWSAT DTLVAARWEQ           SQQ+SAL EEV+RLEQQ+ WLRETF HVF  QD  GTAA  PAG AL  RTPRHLVLQDRILAGR  E+A A  ACGL VL GVGG                V LAVAYR G VDIALVPAG+ PR WSERAGQRVSCA AA     GET+   GAVLESLDLAERV DKTARRRQGLSLS    A WT LAATPCR+ S+TVTWAGRI+ AA+RAR+RAA    G + S+   RLDGDLRA+LRERPDS VNEVLF+P  S+GR+VGVVPV SPIVGHLAMARLAGG VEMVN+ VMTLQATEVASAAKRAEAQ++PGRGDMLPRFE ALQKA   + E +   PL  + GHL MSQLDQ+GV VVEEQADRLVDGG+VVLEKLHLK S RLETL EVYEHQ+GL KG A+E+A LR+GQED+    EEIN MADEQRARSAGVLAVVQATRP+VSPAERAFMSEMKEMENY DRQQV +EPA KQVEEL +AE EAED+LVREAQG        GLSERETRDVWNMLQAD+ERILNL RRM+ A  RL +LGVR+
Sbjct:    1 MQLVLRSASLHPPXXXXXXXXXXXXXGA-------TASVVASELMAVSAGLHLAMLCRSNTIRAVSLMDVPDAAAHAPSSGSIRTPSSAQQRR-----------EDDPFHAVSFSADCAPRPGDDVIPSDSIPPKTPIKGLQFSPSGHSLLIWGESYVAVARLPRSARTTGGSNP-THGVPPATPFLSPPRDLTASGRRRGTAGGDGTSGDKSARWKWTLVDMSGYAVDVMRQRIVHAAWHPASDGCVTLLTAGKDDVYVAVAGVGAKAFVMLHVPGRERPEQVLPIPDGPNVSPPVALAHSHCPGWQRFTIWIAKKDGSVGALCPVVPQTAKVDSEELVGLWSATCDTLVAARWEQAHQSGT----DSQQQSALDEEVARLEQQKGWLRETFSHVFYGQDNDGTAAAVPAGGALVARTPRHLVLQDRILAGRTGENAGA--ACGLAVLQGVGGXXXXXXXXXXXXXXX-VVLAVAYREGWVDIALVPAGVSPR-WSERAGQRVSCAAAAAGGSGGETS---GAVLESLDLAERVEDKTARRRQGLSLSAGGSASWTLLAATPCRVASVTVTWAGRIQRAAERARERAAQDRPGTNSSSGSGRLDGDLRAVLRERPDSQVNEVLFVPRCSSGRIVGVVPVDSPIVGHLAMARLAGGHVEMVNVGVMTLQATEVASAAKRAEAQDTPGRGDMLPRFEAALQKAKKDIGELQANRPLALAAGHLKMSQLDQKGVRVVEEQADRLVDGGVVVLEKLHLKMSRRLETLTEVYEHQSGLVKGTAREIASLRNGQEDKTEWAEEINGMADEQRARSAGVLAVVQATRPNVSPAERAFMSEMKEMENYTDRQQVKIEPAAKQVEELCMAEREAEDFLVREAQGLGTGGRGAGLSERETRDVWNMLQADRERILNLVRRMKTALARLDELGVRK 896          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.112.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LL20_ECTSI0.000e+069.55Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 887..914
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..130
IPR019321Nucleoporin Nup88PFAMPF10168Nup88coord: 692..901
e-value: 2.3E-6
score: 25.7
IPR037700Nucleoporin NUP88/NUP82PANTHERPTHR13257NUCLEOPORIN NUP84-RELATEDcoord: 148..906

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:411558..422031 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.112.1mRNA_P-littoralis_Contig6.112.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig6 411470..423039 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig6.112.1 ID=prot_P-littoralis_Contig6.112.1|Name=mRNA_P-littoralis_Contig6.112.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=918bp
MDITPRRAVSSAATQMQLVLRSASLYPPPTTSLDAAAASSGGGGGGGSGG
TASVVACELMAVSESLDLAMLFRSNMICAVSLLDVPDAATPAAAAAAARA
PSSTSTSTRTPQRQRQRAGEEDPFNIVSFSANCEPRPGDDVIPSDSIPSK
TPIKGLEFSPSGHSLLIWGESYVAVARLPRGSGSSGSSRSNISGVGNPTP
NKYSSGDGSSSSSSSSDKSARWKWTLVDMSGYTVDVMRQRIVQASWHPAS
DSCVTLLTVGKGDVYVAVAKAGAKAFVMLHVPGRERPEQVLPIPDGSSLS
PPVAFAHSHCAGWQRFAVWIARKDGSVGALCPVVPQSAKVDVEELWDLWS
ATSDTLVAARWEQQQQQQQTGLGSSQQESALAEEVSRLEQQQAWLRETFP
HVFDAQDRGGTAAGPAGALATRTPRHLVLQDRILAGRPEEDASAGPACGL
VVLAGVGGGEGGDADEAAVAAPPPVALAVAYRAGCVDIALVPAGIGPRRW
SERAGQRVSCATAAGETTAAAGAVLESLDLAERVTDKTARRRQGLSLSVS
AGAWTFLAATPCRLTSITVTWAGRIEMAAQRARQRAAAAAHGVSRSTERL
DGDLRALLRERPDSAVNEVLFLPSSSAGRVVGVVPVASPIVGHLAMARLA
GGKVEMVNLAVMTLQATEVASAAKRAEAQESPGRGDMLPRFETALQKAVN
ALDERRMAEPLGSSVGHLLMSQLDQEGVGVVEEQADRLVDGGIVVLEKLH
LKTSTRLETLCEVYEHQAGLTKGLAKEVARLRSGQEDRAVTLEEINDMAD
EQRARSAGVLAVVQATRPDVSPAERAFMSEMKEMENYADRQQVMMEPATK
QVEELRLAEEEAEDYLVREAQGTGLSERETRDVWNMLQADKERILNLSRR
MEAARDRLAKLGVRELE*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019321Nucleoporin_Nup88
IPR037700NUP88/NUP82