mRNA_P-littoralis_Contig6.74.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.74.1
Unique NamemRNA_P-littoralis_Contig6.74.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE)

HSP 1 Score: 520 bits (1339), Expect = 3.940e-174
Identity = 333/664 (50.15%), Postives = 385/664 (57.98%), Query Frame = 1
Query:   88 QELFVGVGDSSFCQLPCPLSS-PLYHHHNKGGSKGSRYIMSDDEVPTKRISQIACGATAAFVVA--------------ARTSTGGPSALLEWGTGVYGERLSSSVMIQSAGEEPSAGIVAVLPPLNHPTTMSCPISPLLLGTTSSP-AIRHIACGAHFVVAALEIGGCVSWGGGRETARVLGRGGCXXXXXXXXXXSNGSTLVASKQPSPSSPSCNNSRPDWVAEPLGLGGLKVDSLAAGDDHTVAVCADGSAWAWGRGDCGQLGSGPPAAGVVDLSAGAAVVNGSGGSACAPVVVRVPCHGFTSSXXXXXXXXXXXXXIGGD------MSDGGWPLEAKQHPGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWGQVAPS-KDYS-KGGNHFCGSNSSSSGSRGPGDGKESSLAYFSSPRELKPNELLRAAVAADPLAMSTGGGGAGGCRC--GGVGEADVGKHDDGSDSSWRVSAVGCGPWYIVFELKDSGQQ 2001
            QE+ VGVGDSSFCQ+PCP +S        KG S GS        V TK ISQIACGAT                           P+ LLEWGTG+YGERLS+   +   G+E +         LNHP  ++   S L LG  SSP AIR+IACGAHFVVA+LE GGC+SWGGGRE  R LGRG C           +GST  A     PSS     S PDWVAEPLGLGG KV  LAAGDDH +AV  DG AWAWGRGDCGQLG G P    VD           GGSAC P+ V++P     +               G        +  G    + ++ PG   +RAA CGRDHSA++T+DGR+WTFGSGLHGQLGLG+VGE +  P  VDAL GVGTMR DGSFTG+ +VACGAWHTAALSTTGDVY WGWARFGALGPSP      H R  QD            N S  S  +G   KRKL  T  T A +EGEVRPYPGLVDG+D++L+D DDQLVSVSCGARYTLA +   RAFVWGQVAP  + Y  +GG    G + SS      GD K   L  FS PRE+KP +LL+ A    P    T     G C C  G       G  D G DS W+VS VGCGPW++VF L++  +Q
Sbjct:    5 QEILVGVGDSSFCQIPCPWASWSRQTADEKGKSHGSSSNDDVCRVQTK-ISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPPAYLLEWGTGLYGERLSTETSVPQQGDERNQESF-----LNHPAPVA--FSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCH----DGSTPAARPLSYPSS-----SNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGSPDG--VDYD--------GGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAA-CGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGF-HRRPQQDTTASVIGDSATINDSGASPASG---KRKLETTSSTPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQQYGGRGGGEQKGGDGSSVRGIDTGDRKGPPLGPFSVPREMKPADLLQDAA---PSNSQTDERREGRCYCEVGSPRGVRAGAVDKG-DSRWKVSTVGCGPWFVVFGLQEEERQ 632          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI)

HSP 1 Score: 516 bits (1330), Expect = 6.240e-173
Identity = 330/671 (49.18%), Postives = 388/671 (57.82%), Query Frame = 1
Query:   88 QELFVGVGDSSFCQLPCPLSSPLYHHHNKGGSKGSRYIMSDD--EVPTKRISQIACGATAAFVVA---------ARTSTGGPSALLEWGTGVYGERLSSSVMIQSAGEEPSAGIVAVLPPLNHPTTMSCPISPLLLGTTSSP-AIRHIACGAHFVVAALEIGGCVSWGGGRETARVLGRGGCXXXXXXXXXXSNGSTLVASKQPSPSSPSCNNSRPDWVAEPLGLGGLKVDSLAAGDDHTVAVCADGSAWAWGRGDCGQLGSGPPAAGVVDLSAGAAVVNGSGGSACAPVVVRVPCHGFTSSXXXXXXXXXXXXXIGGDMSDGGWPLEAKQHPGVAD------------VRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWGQVAPSKDY--SKGGNHFCGSNSSSSGSRGPGD------GKESSLAYFSSPRELKPNELLRAAVAADPLAMSTGGGGAGGCRCGGVGEADVGKHDDGSDSSWRVSAVGCGPWYIVFELKDSGQQG 2004
            QE+ VGVGDSSFCQ+PCP +S  +       +  S    ++D   V TK ISQIACGAT               +      PS LLEWGTG+YGERLS+   +   G+E +         LNHP  ++  +S L LG  SSP  IR+IACGAHFVVA+LE GGC+SWGGGRE  R LGRG C           NGST  A     PSS     S+PDWVAEPLGLGG KV  LAAGDDH +AV  DGSAWAWGRGDCGQLG G P  G  D           GGSAC P+ V++P                     G  + +GG    +    G A             V  AACGRDHSA++T+DGR+WTFGSGLHGQLGLG+VGE +  P  VDAL GVGTMR DGSFTG+ +VACGAWHTAALSTTGDVY WGWARFGALGPSP    +P LR  QD            N S  S  +G   KRKL + R T A +EGEVRPYPGLVD +D++L+D DDQLVSVSCGARYT+A +   RAFVWGQVAP   +   +GG                        G+   L  FS+PRE+KP ELL+ A   +   M  GG G   C  G       G  D+G DS WRVSAVGCGPW++VF L++  +QG
Sbjct:    5 QEILVGVGDSSFCQIPCPWAS--WSRQTADANSKSHPSRNEDVRRVQTK-ISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLSTETSVPQQGDERNHASF-----LNHPAQVA--LSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCR----NGSTPAAPPLSYPSS-----SKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGA-DCD--------GGGSACVPMAVQLP-----------------SPASGTPLDEGGLASTSSGAAGAATGVKSGHGVHGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVTGSP-LRPQQDTTASATGDSATINDSGASPASG---KRKLKSARSTPAEEEGEVRPYPGLVDEMDDILADDDDQLVSVSCGARYTVATSTKGRAFVWGQVAPPLQHYGGRGGXXXXXXXXXXXXXXXXXXXXXXXXGRR--LGPFSAPREMKPAELLQDAAPPNSQ-MDEGGEGRCCCEVGSAKGLRAGADDEG-DSRWRVSAVGCGPWFVVFGLQEEERQG 622          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.630e-21
Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1054 VADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG 1347
            V   R  A G  HSAV++ DG ++TFG GL+ QLG G+   + +TP  V +LEGVG ++++  FTG++ VACGAWHTAAL+TTGDVY WGW + G LG
Sbjct:  158 VPQSRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNV-FTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLG 253          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: W4GLY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.010e-20
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1054 VADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGAL 1344
            V   R  A G  HSAV++ DG ++TFG GL+ QLG G+   + +TP  V +LEGVG ++++  FTG++ VACGAWHTAAL+TTGDVY WGW + G L
Sbjct:  158 VPQSRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNV-FTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQL 252          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A830HA29_9CHLO (U-box domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HA29_9CHLO)

HSP 1 Score: 100 bits (249), Expect = 1.760e-18
Identity = 99/335 (29.55%), Postives = 138/335 (41.19%), Query Frame = 1
Query:  685 NNSRPDWVAEPLGLGGLKVDSLAAGDDHTVAVCADGSAWAWGRGDCGQLGSGPPAAGVVDLSAGAAVVNGSGGSACAPVVVRVPCHGF------TSSXXXXXXXXXXXXXIG-GDMSDGGWPLEAKQHPGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPY-PGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWGQVA 1665
            NN R     E   L    V +LA G +HT A+ +DG+ + WG  +CGQLG G                      A A V VR    G+      TS              +G GD S    P   +    V+ +RA ACG  H+A LTSDG V+T+G G +G+LG G       TP  V+AL          S T + ++ACG  HTAAL++ G VY WG +  G LG      +  H  K  +A         A   +        G     G +     G  GE   Y P  V+ + ++       + +++CG  +T A+T     + WG  A
Sbjct:   78 NNQRTPKRVE--ALASTSVRALACGGNHTAALTSDGAVYTWGDSECGQLGHGDENNQHTPKRV----------EALASVSVRALACGYAHTAALTSDGAVYTWGGGNDGQLGHGDTSHQHTPKRVEALASVS-IRALACGEYHTAALTSDGAVYTWGYGAYGRLGHGDTSRQH-TPKRVEAL----------SSTSVRALACGGSHTAALTSDGAVYTWGDSHCGQLGHGDMSRQ--HTPKRVEALASVSIRALACGGNHTVALTSDGAVYSWGDSEHGQLGHGGEDDEYTPKRVEALASV------SVRALACGHNHTTALTSDGAMYSWGYGA 380          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A7S2WVU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU6_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 3.790e-18
Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 1057 ADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG 1347
            A   + A G  HSAV+ S GR++TFGSG   QLG G   +    P  V+ L GVG +  +G+ TGI  V+CG WHTAA++T GD+Y WGW RFG LG
Sbjct:   17 AQAWSVAAGPVHSAVVDSKGRLYTFGSGGRYQLGHGQAVDEP-EPRLVETLLGVGRLLPNGTSTGIRQVSCGTWHTAAITTDGDLYTWGWGRFGQLG 112          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: UPI001AACBD7E (RCC1 domain-containing protein 1 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACBD7E)

HSP 1 Score: 95.5 bits (236), Expect = 1.470e-17
Identity = 65/207 (31.40%), Postives = 93/207 (44.93%), Query Frame = 1
Query: 1039 KQHPGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG-PSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWG 1656
            ++ P     +  A G +H  +LT+DG++ T+G+G HGQLG G V E  W P  V+AL GV           +  VA G WH+A++S  GD+Y WGW   G LG PS          K Q           AE+  D  +G                      V+ +P L+D         + +   +SCG+R+T A+TRS   + WG
Sbjct:  146 RELPTPVQAQRIALGNEHIVLLTTDGKIMTWGAGRHGQLGHGDV-EDVWEPRIVEALHGVP----------MKEVAAGGWHSASISEGGDIYCWGWNESGQLGLPS----------KTQAQERMILRDVSAEDEDDEDSGYIA-------------------VQSFPALID------LPQESEASKISCGSRHTAAVTRSGELYTWG 306          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A1V9YQ58_9STRA (Ultraviolet-B receptor UVR8 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ58_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.030e-17
Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 1075 ACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG 1347
            A G  H+A++T  G ++T G GL+ QLG GS  ++ + P  V +L GVG  R DG+F+G++ V+CGAWHT AL+TTGD+Y WGW + G LG
Sbjct:  162 AAGAHHTALITLTGELYTMGWGLYHQLGHGSTADL-FAPECVTSLLGVGDYR-DGAFSGLTQVSCGAWHTVALTTTGDIYTWGWGQHGQLG 250          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A8J6K4S5_ELECQ (Uncharacterized protein n=3 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6K4S5_ELECQ)

HSP 1 Score: 94.7 bits (234), Expect = 2.670e-17
Identity = 72/230 (31.30%), Postives = 106/230 (46.09%), Query Frame = 1
Query: 1006 DMSDGGWPLEAKQH-----------PGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG-PSPP-RNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWG 1656
            D+ D  +PL AK +           P     +  A G +H+ +LTSDG+V T+GSG HGQLG G V +++  P  V+AL G+ T+R+         VA G WHT ++S +GD+Y WGW   G LG PS   + E P  R+              E+  D   G                      ++ +P L+D         + +   VSCG+R+T  +TRS + + WG
Sbjct:  123 DLYDTAFPLVAKGYVLSEPPFFRELPPTLQAQKMALGNEHAVLLTSDGKVLTWGSGRHGQLGHGDVEDVS-EPRVVEALHGL-TVRE---------VASGGWHTVSISESGDLYCWGWNESGQLGLPSKALQEERPFSREDPTECD--------EDEDDDLIG----------------------IQSFPALID------LPQETEAAKVSCGSRHTATVTRSGQLYTWG 305          
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: UPI001CF474AD (RCC1 domain-containing protein 1 isoform X1 n=5 Tax=Bufo TaxID=8383 RepID=UPI001CF474AD)

HSP 1 Score: 94.0 bits (232), Expect = 6.600e-17
Identity = 70/229 (30.57%), Postives = 106/229 (46.29%), Query Frame = 1
Query: 1006 DMSDGGWPLEAKQH-----------PGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAE-NSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWG 1656
            D+S   +PL  K H                 +  A G +H+ ++TSDG+V T+G+G HGQLG G V +++  P  V+AL GV TM         S VA G WHTA++S +GD+Y WGW   G LG   P       RK  +AA           +S+D+ +   T  +   G      +     ++ +P L+D         + +   + CG+R+T A+ R    + WG
Sbjct:  123 DVSSTAFPLVDKGHVLPQPPFFRELTPTLQAKKMALGNEHAVLMTSDGKVLTWGAGRHGQLGHGDVEDVS-EPRIVEALHGV-TM---------SEVAAGGWHTASISESGDLYCWGWNESGQLGL--PSKALQQERKLDNAALHVPHLYTCTVDSTDLCSSGVTSNEGPSGCQVEEDSDYIA-IQSFPALID------LPQETEAAKIGCGSRHTAALNRCGELYTWG 331          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPF1_9PHAE3.940e-17450.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN13_ECTSI6.240e-17349.18Regulator of chromosome condensation-like protein ... [more]
W4GMU7_9STRA6.630e-2154.08Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
W4GLY5_9STRA1.010e-2053.61Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A830HA29_9CHLO1.760e-1829.55U-box domain-containing protein n=1 Tax=Pycnococcu... [more]
A0A7S2WVU6_9STRA3.790e-1850.52Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
UPI001AACBD7E1.470e-1731.40RCC1 domain-containing protein 1 n=1 Tax=Rana temp... [more]
A0A1V9YQ58_9STRA2.030e-1750.55Ultraviolet-B receptor UVR8 n=1 Tax=Achlya hypogyn... [more]
A0A8J6K4S5_ELECQ2.670e-1731.30Uncharacterized protein n=3 Tax=Eleutherodactylus ... [more]
UPI001CF474AD6.600e-1730.57RCC1 domain-containing protein 1 isoform X1 n=5 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:317006..319316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LN13
PFAMsRCC1
Model size2034
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.02e-173
EggNOG OGsCOG5184@1|root,KOG1426@2759|Eukaryota
Ec32 ortholog descriptionRegulator of chromosome condensation 1/beta-lactamase-inhibitor protein II
Ec32 orthologEc-27_000990.1
Descriptionguanyl-nucleotide exchange factor activity
Cds size2034
COG categoryDZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791234.4762344-CDS-P-littoralis_Contig6:317005..3183421680791234.4762344-CDS-P-littoralis_Contig6:317005..318342Pylaiella littoralis U1_48CDSP-littoralis_Contig6 317006..318342 +
1680791234.4896674-CDS-P-littoralis_Contig6:318577..3191281680791234.4896674-CDS-P-littoralis_Contig6:318577..319128Pylaiella littoralis U1_48CDSP-littoralis_Contig6 318578..319128 +
1680791234.5061643-CDS-P-littoralis_Contig6:319170..3193161680791234.5061643-CDS-P-littoralis_Contig6:319170..319316Pylaiella littoralis U1_48CDSP-littoralis_Contig6 319171..319316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.74.1prot_P-littoralis_Contig6.74.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 317006..319316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.74.1

>prot_P-littoralis_Contig6.74.1 ID=prot_P-littoralis_Contig6.74.1|Name=mRNA_P-littoralis_Contig6.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=678bp
ARQETERIRRVRGQRIEITRTRQAAEMCNQELFVGVGDSSFCQLPCPLSS
PLYHHHNKGGSKGSRYIMSDDEVPTKRISQIACGATAAFVVAARTSTGGP
SALLEWGTGVYGERLSSSVMIQSAGEEPSAGIVAVLPPLNHPTTMSCPIS
PLLLGTTSSPAIRHIACGAHFVVAALEIGGCVSWGGGRETARVLGRGGCG
SCGPCSSLSSNGSTLVASKQPSPSSPSCNNSRPDWVAEPLGLGGLKVDSL
AAGDDHTVAVCADGSAWAWGRGDCGQLGSGPPAAGVVDLSAGAAVVNGSG
GSACAPVVVRVPCHGFTSSSAAAAAAAAAAAAIGGDMSDGGWPLEAKQHP
GVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAV
DALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGP
SPPRNETPHLRKPQDAAAAAASGGGAENSSDVSTGAGTGKKRKLGATRPT
AAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFV
WGQVAPSKDYSKGGNHFCGSNSSSSGSRGPGDGKESSLAYFSSPRELKPN
ELLRAAVAADPLAMSTGGGGAGGCRCGGVGEADVGKHDDGSDSSWRVSAV
GCGPWYIVFELKDSGQQGKTDQPEMVG*
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mRNA from alignment at P-littoralis_Contig6:317006..319316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.74.1 ID=mRNA_P-littoralis_Contig6.74.1|Name=mRNA_P-littoralis_Contig6.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2311bp|location=Sequence derived from alignment at P-littoralis_Contig6:317006..319316+ (Pylaiella littoralis U1_48)
GCAAGACAAGAGACAGAGAGGATCCGGCGGGTCAGAGGTCAGAGGATCGA AATCACACGCACAAGGCAGGCAGCGGAGATGTGCAACCAAGAGCTTTTTG TCGGCGTGGGAGATTCTAGCTTCTGTCAGCTTCCTTGTCCTTTGTCGTCT CCTCTGTATCATCACCATAATAAAGGCGGCAGCAAAGGAAGCAGATATAT TATGAGCGACGATGAAGTTCCCACCAAGAGGATATCCCAGATAGCATGCG GGGCAACGGCGGCTTTCGTGGTCGCTGCCCGCACAAGCACGGGTGGACCA TCCGCCCTTCTTGAGTGGGGAACAGGCGTATACGGCGAGAGACTGTCGTC CTCGGTAATGATACAATCAGCGGGAGAAGAACCATCTGCTGGCATCGTAG CAGTATTGCCGCCGTTAAACCATCCGACTACGATGTCGTGCCCCATCTCG CCTCTGCTATTGGGGACAACAAGCTCTCCGGCGATCCGACATATCGCCTG CGGTGCACACTTCGTCGTGGCTGCTTTGGAAATCGGCGGCTGCGTCTCGT GGGGCGGTGGTCGAGAGACAGCGAGGGTCCTCGGTCGCGGCGGCTGCGGC AGCTGCGGTCCGTGTTCATCTCTCAGCAGCAACGGCTCAACCCTGGTGGC TTCTAAACAGCCGTCGCCATCATCGCCATCCTGCAACAATAGCAGGCCCG ATTGGGTAGCAGAACCCCTCGGTTTAGGAGGATTGAAAGTTGACAGTTTG GCGGCGGGGGACGACCACACCGTCGCTGTCTGCGCGGATGGAAGCGCGTG GGCGTGGGGCCGAGGGGATTGTGGACAGCTGGGCTCTGGTCCACCCGCCG CCGGTGTTGTTGACCTTTCTGCTGGTGCTGCTGTTGTTAATGGCAGCGGT GGTAGTGCGTGCGCGCCGGTGGTAGTTCGAGTGCCTTGTCATGGGTTTAC AAGTTCCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTATTG GTGGGGACATGAGCGATGGTGGGTGGCCACTCGAGGCGAAACAACATCCA GGGGTGGCTGACGTTCGAGCGGCAGCTTGCGGTCGCGATCACAGCGCGGT ACTAACAAGCGATGGCAGGGTGTGGACATTCGGTAGCGGGCTGCACGGAC AGCTGGGTTTGGGAAGCGTCGGCGAAATGGCGTGGACACCAGCGGCTGTG GATGCTTTGGAAGGAGTGGGTACTATGCGAAAGGACGGCTCATTTACGGG CATTTCGTCGGTGGCGTGCGGGGCATGGCACACCGCGGCCCTATCGACAA CTGGCGACGTATACGCCTGGGGATGGGCACGCTTTGGGTAAGCACGACAC GAATTTTCTGCAGCATCGAGGTTCTAGGATATGCCACGATATCCTTCAAT AATAGAACAGCAAATCGTTAGCAAGAAGCAAGTGCGACCTTCGCCCGTTC AGTTACGCGGGCGTGCCTCCTCGCTGCTTTCTCGATTCTTGCAGAAACAT CTGCTCGCACGTCGCTCACTCGCTGTCCCCCTCCCCTCTCCACTGACGGC TCTTGCCTCTGCTCCCACACAGCGCGCTGGGGCCTTCACCTCCGAGAAAT GAAACGCCCCACCTGAGAAAACCACAAGACGCTGCTGCCGCCGCCGCCTC GGGCGGTGGGGCGGAGAATAGTAGCGACGTTTCTACAGGTGCAGGCACAG GCAAAAAAAGAAAACTCGGTGCAACAAGACCGACAGCAGCAGGACAAGAG GGAGAGGTGCGGCCTTACCCCGGCCTCGTGGATGGGATAGACAATCTGTT GTCGGACAGCGATGACCAGCTCGTGTCCGTCTCGTGCGGGGCGCGGTACA CTCTAGCAATGACCAGGTCGAAGAGGGCGTTCGTGTGGGGCCAAGTTGCA CCATCTAAGGATTACAGCAAAGGGGGAAACCATTTCTGCGGTAGTAACAG CAGCAGCAGCGGTAGTAGAGGTCCAGGTGACGGCAAAGAGTCTTCGCTGG CTTATTTTTCTAGTCCGAGAGAGCTCAAACCCAACGAGCTTCTTCGTGCT GCTGTTGCAGCGGACCCGTTAGCGATGTCAACGGGCGGGGGCGGGGCGGG TGGTTGTCGTTGTGGTGGTGTCGGTGAGGGGGCTGCTTCCAAAAACGCCA CGGCAGAAGTCAGAGGGGAAGCTGACGTTGGGAAACACGATGATGGCAGT GACTCGAGCTGGAGAGTGTCGGCGGTAGGGTGTGGACCGTGGTATATCGT GTTCGAACTTAAAGATAGCGGTCAGCAAGGAAAGACGGACCAGCCGGAGA TGGTAGGATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:317006..319316+

>mRNA_P-littoralis_Contig6.74.1 ID=mRNA_P-littoralis_Contig6.74.1|Name=mRNA_P-littoralis_Contig6.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2034bp|location=Sequence derived from alignment at P-littoralis_Contig6:317006..319316+ (Pylaiella littoralis U1_48)
GCAAGACAAGAGACAGAGAGGATCCGGCGGGTCAGAGGTCAGAGGATCGA
AATCACACGCACAAGGCAGGCAGCGGAGATGTGCAACCAAGAGCTTTTTG
TCGGCGTGGGAGATTCTAGCTTCTGTCAGCTTCCTTGTCCTTTGTCGTCT
CCTCTGTATCATCACCATAATAAAGGCGGCAGCAAAGGAAGCAGATATAT
TATGAGCGACGATGAAGTTCCCACCAAGAGGATATCCCAGATAGCATGCG
GGGCAACGGCGGCTTTCGTGGTCGCTGCCCGCACAAGCACGGGTGGACCA
TCCGCCCTTCTTGAGTGGGGAACAGGCGTATACGGCGAGAGACTGTCGTC
CTCGGTAATGATACAATCAGCGGGAGAAGAACCATCTGCTGGCATCGTAG
CAGTATTGCCGCCGTTAAACCATCCGACTACGATGTCGTGCCCCATCTCG
CCTCTGCTATTGGGGACAACAAGCTCTCCGGCGATCCGACATATCGCCTG
CGGTGCACACTTCGTCGTGGCTGCTTTGGAAATCGGCGGCTGCGTCTCGT
GGGGCGGTGGTCGAGAGACAGCGAGGGTCCTCGGTCGCGGCGGCTGCGGC
AGCTGCGGTCCGTGTTCATCTCTCAGCAGCAACGGCTCAACCCTGGTGGC
TTCTAAACAGCCGTCGCCATCATCGCCATCCTGCAACAATAGCAGGCCCG
ATTGGGTAGCAGAACCCCTCGGTTTAGGAGGATTGAAAGTTGACAGTTTG
GCGGCGGGGGACGACCACACCGTCGCTGTCTGCGCGGATGGAAGCGCGTG
GGCGTGGGGCCGAGGGGATTGTGGACAGCTGGGCTCTGGTCCACCCGCCG
CCGGTGTTGTTGACCTTTCTGCTGGTGCTGCTGTTGTTAATGGCAGCGGT
GGTAGTGCGTGCGCGCCGGTGGTAGTTCGAGTGCCTTGTCATGGGTTTAC
AAGTTCCTCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTATTG
GTGGGGACATGAGCGATGGTGGGTGGCCACTCGAGGCGAAACAACATCCA
GGGGTGGCTGACGTTCGAGCGGCAGCTTGCGGTCGCGATCACAGCGCGGT
ACTAACAAGCGATGGCAGGGTGTGGACATTCGGTAGCGGGCTGCACGGAC
AGCTGGGTTTGGGAAGCGTCGGCGAAATGGCGTGGACACCAGCGGCTGTG
GATGCTTTGGAAGGAGTGGGTACTATGCGAAAGGACGGCTCATTTACGGG
CATTTCGTCGGTGGCGTGCGGGGCATGGCACACCGCGGCCCTATCGACAA
CTGGCGACGTATACGCCTGGGGATGGGCACGCTTTGGCGCGCTGGGGCCT
TCACCTCCGAGAAATGAAACGCCCCACCTGAGAAAACCACAAGACGCTGC
TGCCGCCGCCGCCTCGGGCGGTGGGGCGGAGAATAGTAGCGACGTTTCTA
CAGGTGCAGGCACAGGCAAAAAAAGAAAACTCGGTGCAACAAGACCGACA
GCAGCAGGACAAGAGGGAGAGGTGCGGCCTTACCCCGGCCTCGTGGATGG
GATAGACAATCTGTTGTCGGACAGCGATGACCAGCTCGTGTCCGTCTCGT
GCGGGGCGCGGTACACTCTAGCAATGACCAGGTCGAAGAGGGCGTTCGTG
TGGGGCCAAGTTGCACCATCTAAGGATTACAGCAAAGGGGGAAACCATTT
CTGCGGTAGTAACAGCAGCAGCAGCGGTAGTAGAGGTCCAGGTGACGGCA
AAGAGTCTTCGCTGGCTTATTTTTCTAGTCCGAGAGAGCTCAAACCCAAC
GAGCTTCTTCGTGCTGCTGTTGCAGCGGACCCGTTAGCGATGTCAACGGG
CGGGGGCGGGGCGGGTGGTTGTCGTTGTGGTGGTGTCGGGGAAGCTGACG
TTGGGAAACACGATGATGGCAGTGACTCGAGCTGGAGAGTGTCGGCGGTA
GGGTGTGGACCGTGGTATATCGTGTTCGAACTTAAAGATAGCGGTCAGCA
AGGAAAGACGGACCAGCCGGAGATGGTAGGATAA
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