mRNA_P-littoralis_Contig6.74.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A6H5KPF1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPF1_9PHAE) HSP 1 Score: 520 bits (1339), Expect = 3.940e-174 Identity = 333/664 (50.15%), Postives = 385/664 (57.98%), Query Frame = 1
Query: 88 QELFVGVGDSSFCQLPCPLSS-PLYHHHNKGGSKGSRYIMSDDEVPTKRISQIACGATAAFVVA--------------ARTSTGGPSALLEWGTGVYGERLSSSVMIQSAGEEPSAGIVAVLPPLNHPTTMSCPISPLLLGTTSSP-AIRHIACGAHFVVAALEIGGCVSWGGGRETARVLGRGGCXXXXXXXXXXSNGSTLVASKQPSPSSPSCNNSRPDWVAEPLGLGGLKVDSLAAGDDHTVAVCADGSAWAWGRGDCGQLGSGPPAAGVVDLSAGAAVVNGSGGSACAPVVVRVPCHGFTSSXXXXXXXXXXXXXIGGD------MSDGGWPLEAKQHPGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWGQVAPS-KDYS-KGGNHFCGSNSSSSGSRGPGDGKESSLAYFSSPRELKPNELLRAAVAADPLAMSTGGGGAGGCRC--GGVGEADVGKHDDGSDSSWRVSAVGCGPWYIVFELKDSGQQ 2001
QE+ VGVGDSSFCQ+PCP +S KG S GS V TK ISQIACGAT P+ LLEWGTG+YGERLS+ + G+E + LNHP ++ S L LG SSP AIR+IACGAHFVVA+LE GGC+SWGGGRE R LGRG C +GST A PSS S PDWVAEPLGLGG KV LAAGDDH +AV DG AWAWGRGDCGQLG G P VD GGSAC P+ V++P + G + G + ++ PG +RAA CGRDHSA++T+DGR+WTFGSGLHGQLGLG+VGE + P VDAL GVGTMR DGSFTG+ +VACGAWHTAALSTTGDVY WGWARFGALGPSP H R QD N S S +G KRKL T T A +EGEVRPYPGLVDG+D++L+D DDQLVSVSCGARYTLA + RAFVWGQVAP + Y +GG G + SS GD K L FS PRE+KP +LL+ A P T G C C G G D G DS W+VS VGCGPW++VF L++ +Q
Sbjct: 5 QEILVGVGDSSFCQIPCPWASWSRQTADEKGKSHGSSSNDDVCRVQTK-ISQIACGATTCLAAVNXXXXXXXXXXXXXXAIDPAPPAYLLEWGTGLYGERLSTETSVPQQGDERNQESF-----LNHPAPVA--FSSLPLGLRSSPPAIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCH----DGSTPAARPLSYPSS-----SNPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGCAWAWGRGDCGQLGYGSPDG--VDYD--------GGGSACVPMAVQLPSPASGTPLDEGGLASTSSGAAGAXXXXXXXVKSGHGLQDPRKRPGALVIRAA-CGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMETVACGAWHTAALSTTGDVYTWGWARFGALGPSPLVAGF-HRRPQQDTTASVIGDSATINDSGASPASG---KRKLETTSSTPAAEEGEVRPYPGLVDGMDDILADDDDQLVSVSCGARYTLATSSKGRAFVWGQVAPPLQQYGGRGGGEQKGGDGSSVRGIDTGDRKGPPLGPFSVPREMKPADLLQDAA---PSNSQTDERREGRCYCEVGSPRGVRAGAVDKG-DSRWKVSTVGCGPWFVVFGLQEEERQ 632
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: D8LN13_ECTSI (Regulator of chromosome condensation-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN13_ECTSI) HSP 1 Score: 516 bits (1330), Expect = 6.240e-173 Identity = 330/671 (49.18%), Postives = 388/671 (57.82%), Query Frame = 1
Query: 88 QELFVGVGDSSFCQLPCPLSSPLYHHHNKGGSKGSRYIMSDD--EVPTKRISQIACGATAAFVVA---------ARTSTGGPSALLEWGTGVYGERLSSSVMIQSAGEEPSAGIVAVLPPLNHPTTMSCPISPLLLGTTSSP-AIRHIACGAHFVVAALEIGGCVSWGGGRETARVLGRGGCXXXXXXXXXXSNGSTLVASKQPSPSSPSCNNSRPDWVAEPLGLGGLKVDSLAAGDDHTVAVCADGSAWAWGRGDCGQLGSGPPAAGVVDLSAGAAVVNGSGGSACAPVVVRVPCHGFTSSXXXXXXXXXXXXXIGGDMSDGGWPLEAKQHPGVAD------------VRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWGQVAPSKDY--SKGGNHFCGSNSSSSGSRGPGD------GKESSLAYFSSPRELKPNELLRAAVAADPLAMSTGGGGAGGCRCGGVGEADVGKHDDGSDSSWRVSAVGCGPWYIVFELKDSGQQG 2004
QE+ VGVGDSSFCQ+PCP +S + + S ++D V TK ISQIACGAT + PS LLEWGTG+YGERLS+ + G+E + LNHP ++ +S L LG SSP IR+IACGAHFVVA+LE GGC+SWGGGRE R LGRG C NGST A PSS S+PDWVAEPLGLGG KV LAAGDDH +AV DGSAWAWGRGDCGQLG G P G D GGSAC P+ V++P G + +GG + G A V AACGRDHSA++T+DGR+WTFGSGLHGQLGLG+VGE + P VDAL GVGTMR DGSFTG+ +VACGAWHTAALSTTGDVY WGWARFGALGPSP +P LR QD N S S +G KRKL + R T A +EGEVRPYPGLVD +D++L+D DDQLVSVSCGARYT+A + RAFVWGQVAP + +GG G+ L FS+PRE+KP ELL+ A + M GG G C G G D+G DS WRVSAVGCGPW++VF L++ +QG
Sbjct: 5 QEILVGVGDSSFCQIPCPWAS--WSRQTADANSKSHPSRNEDVRRVQTK-ISQIACGATTCLAAVNXXXXXXXXSAIDHARPSFLLEWGTGLYGERLSTETSVPQQGDERNHASF-----LNHPAQVA--LSSLPLGLRSSPPVIRYIACGAHFVVASLENGGCISWGGGREGRRALGRGSCGTCGQCR----NGSTPAAPPLSYPSS-----SKPDWVAEPLGLGGSKVADLAAGDDHVIAVGTDGSAWAWGRGDCGQLGYGSPPDGA-DCD--------GGGSACVPMAVQLP-----------------SPASGTPLDEGGLASTSSGAAGAATGVKSGHGVHGALVIRAACGRDHSAIITNDGRIWTFGSGLHGQLGLGTVGETSSIPTVVDALIGVGTMRPDGSFTGMEAVACGAWHTAALSTTGDVYTWGWARFGALGPSPFVTGSP-LRPQQDTTASATGDSATINDSGASPASG---KRKLKSARSTPAEEEGEVRPYPGLVDEMDDILADDDDQLVSVSCGARYTVATSTKGRAFVWGQVAPPLQHYGGRGGXXXXXXXXXXXXXXXXXXXXXXXXGRR--LGPFSAPREMKPAELLQDAAPPNSQ-MDEGGEGRCCCEVGSAKGLRAGADDEG-DSRWRVSAVGCGPWFVVFGLQEEERQG 622
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: W4GMU7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GMU7_9STRA) HSP 1 Score: 105 bits (261), Expect = 6.630e-21 Identity = 53/98 (54.08%), Postives = 70/98 (71.43%), Query Frame = 1
Query: 1054 VADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG 1347
V R A G HSAV++ DG ++TFG GL+ QLG G+ + +TP V +LEGVG ++++ FTG++ VACGAWHTAAL+TTGDVY WGW + G LG
Sbjct: 158 VPQSRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNV-FTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQLG 253
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: W4GLY5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLY5_9STRA) HSP 1 Score: 103 bits (256), Expect = 1.010e-20 Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1054 VADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGAL 1344
V R A G HSAV++ DG ++TFG GL+ QLG G+ + +TP V +LEGVG ++++ FTG++ VACGAWHTAAL+TTGDVY WGW + G L
Sbjct: 158 VPQSRFIAAGAHHSAVISCDGHLYTFGWGLYHQLGHGTTNNV-FTPTRVRSLEGVGQLQRN-HFTGLARVACGAWHTAALTTTGDVYTWGWGQHGQL 252
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A830HA29_9CHLO (U-box domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HA29_9CHLO) HSP 1 Score: 100 bits (249), Expect = 1.760e-18 Identity = 99/335 (29.55%), Postives = 138/335 (41.19%), Query Frame = 1
Query: 685 NNSRPDWVAEPLGLGGLKVDSLAAGDDHTVAVCADGSAWAWGRGDCGQLGSGPPAAGVVDLSAGAAVVNGSGGSACAPVVVRVPCHGF------TSSXXXXXXXXXXXXXIG-GDMSDGGWPLEAKQHPGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPY-PGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWGQVA 1665
NN R E L V +LA G +HT A+ +DG+ + WG +CGQLG G A A V VR G+ TS +G GD S P + V+ +RA ACG H+A LTSDG V+T+G G +G+LG G TP V+AL S T + ++ACG HTAAL++ G VY WG + G LG + H K +A A + G G + G GE Y P V+ + ++ + +++CG +T A+T + WG A
Sbjct: 78 NNQRTPKRVE--ALASTSVRALACGGNHTAALTSDGAVYTWGDSECGQLGHGDENNQHTPKRV----------EALASVSVRALACGYAHTAALTSDGAVYTWGGGNDGQLGHGDTSHQHTPKRVEALASVS-IRALACGEYHTAALTSDGAVYTWGYGAYGRLGHGDTSRQH-TPKRVEAL----------SSTSVRALACGGSHTAALTSDGAVYTWGDSHCGQLGHGDMSRQ--HTPKRVEALASVSIRALACGGNHTVALTSDGAVYSWGDSEHGQLGHGGEDDEYTPKRVEALASV------SVRALACGHNHTTALTSDGAMYSWGYGA 380
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A7S2WVU6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WVU6_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 3.790e-18 Identity = 49/97 (50.52%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 1057 ADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG 1347
A + A G HSAV+ S GR++TFGSG QLG G + P V+ L GVG + +G+ TGI V+CG WHTAA++T GD+Y WGW RFG LG
Sbjct: 17 AQAWSVAAGPVHSAVVDSKGRLYTFGSGGRYQLGHGQAVDEP-EPRLVETLLGVGRLLPNGTSTGIRQVSCGTWHTAAITTDGDLYTWGWGRFGQLG 112
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: UPI001AACBD7E (RCC1 domain-containing protein 1 n=1 Tax=Rana temporaria TaxID=8407 RepID=UPI001AACBD7E) HSP 1 Score: 95.5 bits (236), Expect = 1.470e-17 Identity = 65/207 (31.40%), Postives = 93/207 (44.93%), Query Frame = 1
Query: 1039 KQHPGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG-PSPPRNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWG 1656
++ P + A G +H +LT+DG++ T+G+G HGQLG G V E W P V+AL GV + VA G WH+A++S GD+Y WGW G LG PS K Q AE+ D +G V+ +P L+D + + +SCG+R+T A+TRS + WG
Sbjct: 146 RELPTPVQAQRIALGNEHIVLLTTDGKIMTWGAGRHGQLGHGDV-EDVWEPRIVEALHGVP----------MKEVAAGGWHSASISEGGDIYCWGWNESGQLGLPS----------KTQAQERMILRDVSAEDEDDEDSGYIA-------------------VQSFPALID------LPQESEASKISCGSRHTAAVTRSGELYTWG 306
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A1V9YQ58_9STRA (Ultraviolet-B receptor UVR8 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YQ58_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 2.030e-17 Identity = 46/91 (50.55%), Postives = 64/91 (70.33%), Query Frame = 1
Query: 1075 ACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG 1347
A G H+A++T G ++T G GL+ QLG GS ++ + P V +L GVG R DG+F+G++ V+CGAWHT AL+TTGD+Y WGW + G LG
Sbjct: 162 AAGAHHTALITLTGELYTMGWGLYHQLGHGSTADL-FAPECVTSLLGVGDYR-DGAFSGLTQVSCGAWHTVALTTTGDIYTWGWGQHGQLG 250
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: A0A8J6K4S5_ELECQ (Uncharacterized protein n=3 Tax=Eleutherodactylus coqui TaxID=57060 RepID=A0A8J6K4S5_ELECQ) HSP 1 Score: 94.7 bits (234), Expect = 2.670e-17 Identity = 72/230 (31.30%), Postives = 106/230 (46.09%), Query Frame = 1
Query: 1006 DMSDGGWPLEAKQH-----------PGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALG-PSPP-RNETPHLRKPQDAAXXXXXXXXAENSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWG 1656
D+ D +PL AK + P + A G +H+ +LTSDG+V T+GSG HGQLG G V +++ P V+AL G+ T+R+ VA G WHT ++S +GD+Y WGW G LG PS + E P R+ E+ D G ++ +P L+D + + VSCG+R+T +TRS + + WG
Sbjct: 123 DLYDTAFPLVAKGYVLSEPPFFRELPPTLQAQKMALGNEHAVLLTSDGKVLTWGSGRHGQLGHGDVEDVS-EPRVVEALHGL-TVRE---------VASGGWHTVSISESGDLYCWGWNESGQLGLPSKALQEERPFSREDPTECD--------EDEDDDLIG----------------------IQSFPALID------LPQETEAAKVSCGSRHTATVTRSGQLYTWG 305
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Match: UPI001CF474AD (RCC1 domain-containing protein 1 isoform X1 n=5 Tax=Bufo TaxID=8383 RepID=UPI001CF474AD) HSP 1 Score: 94.0 bits (232), Expect = 6.600e-17 Identity = 70/229 (30.57%), Postives = 106/229 (46.29%), Query Frame = 1
Query: 1006 DMSDGGWPLEAKQH-----------PGVADVRAAACGRDHSAVLTSDGRVWTFGSGLHGQLGLGSVGEMAWTPAAVDALEGVGTMRKDGSFTGISSVACGAWHTAALSTTGDVYAWGWARFGALGPSPPRNETPHLRKPQDAAXXXXXXXXAE-NSSDVSTGAGTGKKRKLGATRPTAAGQEGEVRPYPGLVDGIDNLLSDSDDQLVSVSCGARYTLAMTRSKRAFVWG 1656
D+S +PL K H + A G +H+ ++TSDG+V T+G+G HGQLG G V +++ P V+AL GV TM S VA G WHTA++S +GD+Y WGW G LG P RK +AA +S+D+ + T + G + ++ +P L+D + + + CG+R+T A+ R + WG
Sbjct: 123 DVSSTAFPLVDKGHVLPQPPFFRELTPTLQAKKMALGNEHAVLMTSDGKVLTWGAGRHGQLGHGDVEDVS-EPRIVEALHGV-TM---------SEVAAGGWHTASISESGDLYCWGWNESGQLGL--PSKALQQERKLDNAALHVPHLYTCTVDSTDLCSSGVTSNEGPSGCQVEEDSDYIA-IQSFPALID------LPQETEAAKIGCGSRHTAALNRCGELYTWG 331 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.74.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig6.74.1 >prot_P-littoralis_Contig6.74.1 ID=prot_P-littoralis_Contig6.74.1|Name=mRNA_P-littoralis_Contig6.74.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=678bp ARQETERIRRVRGQRIEITRTRQAAEMCNQELFVGVGDSSFCQLPCPLSSback to top mRNA from alignment at P-littoralis_Contig6:317006..319316+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig6.74.1 ID=mRNA_P-littoralis_Contig6.74.1|Name=mRNA_P-littoralis_Contig6.74.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2311bp|location=Sequence derived from alignment at P-littoralis_Contig6:317006..319316+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig6:317006..319316+ >mRNA_P-littoralis_Contig6.74.1 ID=mRNA_P-littoralis_Contig6.74.1|Name=mRNA_P-littoralis_Contig6.74.1|organism=Pylaiella littoralis U1_48|type=CDS|length=2034bp|location=Sequence derived from alignment at P-littoralis_Contig6:317006..319316+ (Pylaiella littoralis U1_48)back to top |