mRNA_P-littoralis_Contig6.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.65.1
Unique NamemRNA_P-littoralis_Contig6.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig6.65.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.660e-68
Identity = 149/189 (78.84%), Postives = 158/189 (83.60%), Query Frame = 1 
Query:    1 PGFGKGEGKLLSCASDGCGRRFHMGCLKPPLSRTPNTDEWSCPVCRKRKAHAEREAKAQAXREKKKRELAAKLAKLPAKTIKLQATDGPRNIIGIILPERSVENVCDALRGYEAELEKQREAGERRTREEXXXXXXXXXXXXXXXXXXQAMKLEERNXXXXXXRSGXXXXXXXXGVKVEHGEGGMEDED 567
            P FGKGEGKLL+C  +GCGRRFHMGCLKPPLSRTP   EWSCP+CRKRKAHAEREAKAQA R++KKRELAAKLAK P KTIKL+ATDGPRNIIGIILPERSVE+VCDALRGYEAELEKQREAGERR R  XXXXXXXXXXXXXXXXX QAMKLEERN        G XXXX    VK E  E G E++D
Sbjct:  553 PVFGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRERXXXXXXXXXXXXXXXXXXXQQAMKLEERNKQKGKAHGGGXXXXASGDVKREE-EAGEEEQD 740
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BLAST of mRNA_P-littoralis_Contig6.65.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 3.520e-62
Identity = 133/157 (84.71%), Postives = 141/157 (89.81%), Query Frame = 1 
Query:    1 PGFGKGEGKLLSCASDGCGRRFHMGCLKPPLSRTPNTDEWSCPVCRKRKAHAEREAKAQAXREKKKRELAAKLAKLPAKTIKLQATDGPRNIIGIILPERSVENVCDALRGYEAELEKQREAGERRTREEXXXXXXXXXXXXXXXXXXQAMKLEERN 471
            P FGKGEGKLL+C  +GCGRRFHMGCLKPPLSRTP   +WSCP+CRKR AH EREAKAQA R++KKRELAAKLAK P KTIKL+ATDGPRNIIGIILPERSVE+VCDALRGYEAELEKQREAGERR    XXXXXXXXXXXXXXXXXX AMKLEERN
Sbjct:  845 PVFGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGKWSCPICRKRTAHLEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERN 1001
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN05_ECTSI3.660e-6878.84PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KWU5_9PHAE3.520e-6284.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:274149..277175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LN05
Model size584
Max annot lvl2880.D8LN05|-
Hectar predicted targeting categoryother localisation
Exons4
Evalue6e-69
EggNOG OGsKOG1513@1|root,KOG1513@2759|Eukaryota
Descriptioncellular response to interleukin-11
Cds size582
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791233.7992837-CDS-P-littoralis_Contig6:274149..2743921680791233.7992837-CDS-P-littoralis_Contig6:274149..274392Pylaiella littoralis U1_48CDSP-littoralis_Contig6 274150..274392 -
1680791233.8100188-CDS-P-littoralis_Contig6:274722..2748211680791233.8100188-CDS-P-littoralis_Contig6:274722..274821Pylaiella littoralis U1_48CDSP-littoralis_Contig6 274723..274821 -
1680791233.8206487-CDS-P-littoralis_Contig6:276436..2765771680791233.8206487-CDS-P-littoralis_Contig6:276436..276577Pylaiella littoralis U1_48CDSP-littoralis_Contig6 276437..276577 -
1680791233.8344805-CDS-P-littoralis_Contig6:277076..2771751680791233.8344805-CDS-P-littoralis_Contig6:277076..277175Pylaiella littoralis U1_48CDSP-littoralis_Contig6 277077..277175 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.65.1prot_P-littoralis_Contig6.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 274150..277175 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.65.1

>prot_P-littoralis_Contig6.65.1 ID=prot_P-littoralis_Contig6.65.1|Name=mRNA_P-littoralis_Contig6.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
PGFGKGEGKLLSCASDGCGRRFHMGCLKPPLSRTPNTDEWSCPVCRKRKA
HAEREAKAQARREKKKRELAAKLAKLPAKTIKLQATDGPRNIIGIILPER
SVENVCDALRGYEAELEKQREAGERRTREEQEAREAAEAARQDAKRAQQA
MKLEERNRQKAKRRSGGSGGGGGSGVKVEHGEGGMEDEDHDGRG
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mRNA from alignment at P-littoralis_Contig6:274149..277175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.65.1 ID=mRNA_P-littoralis_Contig6.65.1|Name=mRNA_P-littoralis_Contig6.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3027bp|location=Sequence derived from alignment at P-littoralis_Contig6:274149..277175- (Pylaiella littoralis U1_48)
CCGGGCTTCGGGAAGGGGGAGGGAAAGCTTCTGTCTTGCGCTTCAGACGG
GTGCGGGAGGCGGTTCCACATGGGGTGCCTTAAGCCGCCGCTGTCGAGAG
TGAGTCGTCCGGTTGTCGTTTATTCGATGTTGTGTGCATCATATGTGCAC
TCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC
ACACTTAACGATAGGTACGACAGCTCCCGCGAGTGACGATATTGATGACG
TCGTCATTACCATCGTGGTCGTGGTCGTGGTTGTGGTCGTGCTGATCGCC
GCGCTTCTCACGAATATACGTCAGCAGCAGGAGCAGCAGCAGCAGCAGCA
GTAATGGCAGCGGTAGATAACGTGCCCGGTGAATCGTCCTGTTCCCTTCG
GCTCTCTACATACTGTTGTAAATTTTGCACGTATGTGCTCTCGAAGGTCT
TCGATTCCCGATTTTTCTTGATGTAGCTCGGAGTCCCGTCCGTTACCGTG
CCCACCCAGTCTCGAAACGCACAAATGCTCACGGTGGTCCCCCATCCGGT
GCGCGCACGTGCGGGTGTTACTGCTGTACCGTGTCTGCGAACGAGCAGAC
TCCGAACACCGATGAGTGGTCGTGTCCAGTGTGCCGCAAGAGGAAGGCGC
ACGCCGAGCGAGAGGCGAAGGCCCAGGCCAGGCGAGAGAAGAAGAAGCGG
GAGCTGGCAGCCAAGCTGGCCAAGTTGCCCGCGAAGACGGTACGCACCTT
ACTAGGCAAAGCAGAACAGCAGCAGTGCGGTATAGTTGCAACTACCCCGC
CGGCGATTTGATCGCCTCTTTCGATATCATATACTCGGAGTAATATAATA
CTTTACAGCCAGTCGCCCCCGCTTGAATGACAACCTCCCCACCCCGTCCA
CCCCTTCTCCTTAACCCTTTTACACCCCTGTGAAAAATAATGGAACAATT
TTTTTTTAACGAAAGCTCTATTAAAGCAAGAGAACACGTCCCCAAAAAAA
TGGCAACGTGTTCTCTTGCTTATAGAGTGCGTTTGATAGTTGAGCGGTTA
GCGAGGTAAAAGCTTAGCTATTGGGAGTCACCTGATATTCCAAGTGACCA
ATGACAAAATGGCGACCCAAAATGGCGACATTTGGCTACCTAGGGGTAAG
AGGGTTAACACCAAGCAAGGTCCCCCGCCTTAGAAAATATAACATATACG
AAAAATGATGTGCACGTAAAACGGAGAAAATACTTCGGAGTATATACTGC
ACAACATACGAAAATGATGTACGTAAAATTATCGTCTTGTTTTTTTCTTT
CATCCATCCGTTCATTCATGAATTCACGAATTCATGAATTCATGCATCCA
GGCATTCTGCCGTGACCCCTGTAAGCCGTGTAGTCGCCGCTTGCCGAGGA
CGAGGGTTGTGTGCGACGTTGTGTTGAACAGTATTGTTGTTTCTGTTTCT
GTTTCTGTTTCTGTCTCCGTTTCTGTCTGTTTTTTTTTTTTACTTTCTGC
GGTTCTTTCCCTTGCCATCTCTGCCTTGTGTTTAGTTGTCCTCGATTTCT
TTTTTTTGGGGCCGGGAACAACCGCTTCTGCATGGTGTGATGGTATGGTA
GTCGAATTATGATAACCTCCACATCATGTGTGTATATTTCCGAGACCTAC
CCTCTCACACGAAATCATGGGTCGTCGTGATCTCAAACCCCGGTGAACTC
GGATTGTTTCTCATCCTCTACCCGGGAGTTTTTCTCAGTCCGATACGTAC
GTAGAAGTGGCAAGCGATTGCTTCGCGATGAGGGCAAGCAAAATTCGACG
AGGGGAAGAGACGGTCGATCCCTTCTTGCGATAAAAAATGGGAAGCAAGG
CAAGCTAGCAATAAGTATAATTCTCTTTTTGACCTTCCTATCTCAAGCTC
CGTGTGACCCCCCCCTGGCTGGTGATTCCAACTCGGGCCGAAAGGTGTAG
ACGTCGGGAATAGATGGGACGACAGCACACACATGCGTAGAAAAAAAGAC
TTGAAGTGGGTGGAGTCCACATTTTTTTCACTCGAGAGGGTGGTCCATAT
TTATCTCGCTGCCGCGAGACATTCGCGCTGCAACTGCTGCCTACACCAGC
GGTAACGGGAAAAAAAATGAGTACTTCGGGTACGATCCAACCCGGTACCC
GAAACTACTGCTGTATGCCATCATCTGAAACCATCACAATCATTTTCACA
GGTATCATTTTACTTGGAGTCGTTCCTTTGCTTGTTTTTTTTTTCACATT
CGCTTTGTTTTTTATTTTTTTATTCCATTAATTTATATTTTACGAAATTT
CTGTATATTTGCACACGCTGTCTTGTGATGTGAACCTCTTTTTTTGTTCA
TCAGATCAAGCTTCAGGCGACAGATGGGCCTAGAAATATCATCGGTATCA
TTCTGCCGGAGCGATCTGTCGAGAATGTGTGCGATGCTCTTCGCGGATAC
GAGGTGCATGGAAGTGGAGGATGGGGAAATGCGGGGGGGGGGGGGTATTC
CATTATTTGAAGCGACCCTTGCAGGAAGTCATTTTACCATTGACCTCGTG
TCCTCACGATGGCGGACAACGGAGAGGTAGCGGACACTGTCGGAATCGCT
CGAATCGTGCACACTCCGGCAACGAATCTGTGTGCTGGTGTGCTGGTATG
CCACGTAGATTGGATGGAGCCACTGCTGCTGCAACGGTAGAAGGTCGTGA
TGTTCAGCAGTATATGTTTTGTTCATTTCCTTGGCTCATCCCGTCTAGTG
GACATGCTTTTTTTATCGGAATCATCTCGGCAGGCCGAGCTGGAGAAGCA
GCGCGAGGCCGGAGAACGAAGAACGAGAGAGGAACAGGAGGCCCGGGAGG
CCGCGGAAGCAGCTCGGCAGGATGCCAAGCGCGCTCAGCAGGCCATGAAG
CTCGAAGAACGCAACAGGCAGAAAGCCAAGCGCCGCAGCGGCGGCAGCGG
CGGCGGCGGCGGCAGCGGGGTGAAAGTCGAGCACGGGGAGGGCGGGATGG
AAGACGAAGATCATGATGGTCGTGGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:274149..277175-

>mRNA_P-littoralis_Contig6.65.1 ID=mRNA_P-littoralis_Contig6.65.1|Name=mRNA_P-littoralis_Contig6.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=582bp|location=Sequence derived from alignment at P-littoralis_Contig6:274149..277175- (Pylaiella littoralis U1_48)
CCGGGCTTCGGGAAGGGGGAGGGAAAGCTTCTGTCTTGCGCTTCAGACGG
GTGCGGGAGGCGGTTCCACATGGGGTGCCTTAAGCCGCCGCTGTCGAGAA
CTCCGAACACCGATGAGTGGTCGTGTCCAGTGTGCCGCAAGAGGAAGGCG
CACGCCGAGCGAGAGGCGAAGGCCCAGGCCAGGCGAGAGAAGAAGAAGCG
GGAGCTGGCAGCCAAGCTGGCCAAGTTGCCCGCGAAGACGATCAAGCTTC
AGGCGACAGATGGGCCTAGAAATATCATCGGTATCATTCTGCCGGAGCGA
TCTGTCGAGAATGTGTGCGATGCTCTTCGCGGATACGAGGCCGAGCTGGA
GAAGCAGCGCGAGGCCGGAGAACGAAGAACGAGAGAGGAACAGGAGGCCC
GGGAGGCCGCGGAAGCAGCTCGGCAGGATGCCAAGCGCGCTCAGCAGGCC
ATGAAGCTCGAAGAACGCAACAGGCAGAAAGCCAAGCGCCGCAGCGGCGG
CAGCGGCGGCGGCGGCGGCAGCGGGGTGAAAGTCGAGCACGGGGAGGGCG
GGATGGAAGACGAAGATCATGATGGTCGTGGT
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