prot_P-littoralis_Contig6.65.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig6.65.1
Unique Nameprot_P-littoralis_Contig6.65.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length194
Homology
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BLAST of mRNA_P-littoralis_Contig6.65.1 vs. uniprot
Match: D8LN05_ECTSI (PHD-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN05_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.660e-68
Identity = 149/189 (78.84%), Postives = 158/189 (83.60%), Query Frame = 0 
Query:    1 PGFGKGEGKLLSCASDGCGRRFHMGCLKPPLSRTPNTDEWSCPVCRKRKAHAEREAKAQAXREKKKRELAAKLAKLPAKTIKLQATDGPRNIIGIILPERSVENVCDALRGYEAELEKQREAGERRTREEXXXXXXXXXXXXXXXXXXQAMKLEERNXXXXXXRSGXXXXXXXXGVKVEHGEGGMEDED 189
            P FGKGEGKLL+C  +GCGRRFHMGCLKPPLSRTP   EWSCP+CRKRKAHAEREAKAQA R++KKRELAAKLAK P KTIKL+ATDGPRNIIGIILPERSVE+VCDALRGYEAELEKQREAGERR R  XXXXXXXXXXXXXXXXX QAMKLEERN        G XXXX    VK E  E G E++D
Sbjct:  553 PVFGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGEWSCPICRKRKAHAEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERRERXXXXXXXXXXXXXXXXXXXQQAMKLEERNKQKGKAHGGGXXXXASGDVKREE-EAGEEEQD 740
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BLAST of mRNA_P-littoralis_Contig6.65.1 vs. uniprot
Match: A0A6H5KWU5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU5_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 3.520e-62
Identity = 133/157 (84.71%), Postives = 141/157 (89.81%), Query Frame = 0 
Query:    1 PGFGKGEGKLLSCASDGCGRRFHMGCLKPPLSRTPNTDEWSCPVCRKRKAHAEREAKAQAXREKKKRELAAKLAKLPAKTIKLQATDGPRNIIGIILPERSVENVCDALRGYEAELEKQREAGERRTREEXXXXXXXXXXXXXXXXXXQAMKLEERN 157
            P FGKGEGKLL+C  +GCGRRFHMGCLKPPLSRTP   +WSCP+CRKR AH EREAKAQA R++KKRELAAKLAK P KTIKL+ATDGPRNIIGIILPERSVE+VCDALRGYEAELEKQREAGERR    XXXXXXXXXXXXXXXXXX AMKLEERN
Sbjct:  845 PVFGKGEGKLLACREEGCGRRFHMGCLKPPLSRTPKEGKWSCPICRKRTAHLEREAKAQAKRDQKKRELAAKLAKSPVKTIKLEATDGPRNIIGIILPERSVESVCDALRGYEAELEKQREAGERREXXXXXXXXXXXXXXXXXXXXXXAMKLEERN 1001
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.65.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN05_ECTSI3.660e-6878.84PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KWU5_9PHAE3.520e-6284.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 102..164
NoneNo IPR availableCOILSCoilCoilcoord: 48..68
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 113..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 180..194
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 4..46
e-value: 3.4E-6
score: 36.6
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 3..70
e-value: 6.6E-13
score: 50.1
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 7..47
e-value: 6.6E-9
score: 35.5
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 7..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:274150..277175 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.65.1mRNA_P-littoralis_Contig6.65.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig6 274149..277175 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig6.65.1 ID=prot_P-littoralis_Contig6.65.1|Name=mRNA_P-littoralis_Contig6.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=194bp
PGFGKGEGKLLSCASDGCGRRFHMGCLKPPLSRTPNTDEWSCPVCRKRKA
HAEREAKAQARREKKKRELAAKLAKLPAKTIKLQATDGPRNIIGIILPER
SVENVCDALRGYEAELEKQREAGERRTREEQEAREAAEAARQDAKRAQQA
MKLEERNRQKAKRRSGGSGGGGGSGVKVEHGEGGMEDEDHDGRG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD