mRNA_P-littoralis_Contig597.2.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig597.2.2
Unique NamemRNA_P-littoralis_Contig597.2.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE)

HSP 1 Score: 202 bits (515), Expect = 2.470e-56
Identity = 107/185 (57.84%), Postives = 133/185 (71.89%), Query Frame = 1
Query:  223 EYDVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
            ++ VP+ T +++ SF     +Q+EGAREDSFL+SLGNY  PV      S +   +++CQVG C    KT PCPKG KSNVNKH ++ HQL G +G  R + AQ  QGNI +AM A+ TFGVG +RVKELQAAK VVEKMLPF+F+SSG  F+EMMAT  G +SYP L P+RVKHL+ ELY ATKK
Sbjct:   59 DFVVPQVTIDSIESFKAKDEYQREGAREDSFLYSLGNYAAPV----EKSGKWIGYYKCQVGKCRTSTKTTPCPKGSKSNVNKHFREVHQLVGAKGAVRMENAQNHQGNIRAAMGASKTFGVGGKRVKELQAAKLVVEKMLPFSFFSSGGTFKEMMATATGTSSYPTLPPRRVKHLITELYVATKK 239          
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 4.690e-36
Identity = 87/185 (47.03%), Postives = 91/185 (49.19%), Query Frame = 1
Query:  223 EYDVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
            EYDVPEATKNAVA+FVVP GFQQEGAREDSF++SLGNY VP                                                                                         AAK VVEKMLPF FYSSGEMFREMMATHGGNTSYPEL PKRVKHLLVELYC+TKK
Sbjct:   70 EYDVPEATKNAVAAFVVPTGFQQEGAREDSFMYSLGNYCVP-----------------------------------------------------------------------------------------AAKQVVEKMLPFHFYSSGEMFREMMATHGGNTSYPELPPKRVKHLLVELYCSTKK 165          
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5KQP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP3_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 4.650e-30
Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 2
Query:   17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNVKRPAPVFHVGGG 223
            MSDA GGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQ+SVNVKRP PVF   GG
Sbjct:    1 MSDASGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQQSVNVKRPPPVFRASGG 69          
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 5.990e-29
Identity = 71/184 (38.59%), Postives = 110/184 (59.78%), Query Frame = 1
Query:  232 VPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVG-GCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGG-NTSYPELSPKRVKHLLVELYCATKK 777
            +  AT  AV +F  P+GF ++G R+DSF++SLG Y   +G       ++K  F C  G  C +  K IPC +G +SNVN HLK  H ++G  G +++ R Q+ Q +I  ++  +    +G  RV+EL   K +VE+ L F F+S+ +M+R+ +      NT YP L P+R+KHL+ E++ ATKK
Sbjct:   83 IAAATVAAVDNFQAPSGFVKKGCRQDSFMYSLGVYVEQIG-----GDQHK--FFCLAGPDCRRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQARRQSTQQSIGRSLTLSKNSQLGKNRVRELLCTKWLVERFLAFNFFSASDMWRQTIGFETAENTPYPPLPPERMKHLVAEMFLATKK 259          
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5L4Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z5_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.750e-19
Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 2
Query:   17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNV 187
            MSDA GGSAASAPDA GSPGTSTLAP SSTQDAQQDNEVVVVPGSTSGGAPQ+ + V
Sbjct:    1 MSDASGGSAASAPDADGSPGTSTLAPCSSTQDAQQDNEVVVVPGSTSGGAPQQFIIV 57          
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.060e-18
Identity = 63/183 (34.43%), Postives = 88/183 (48.09%), Query Frame = 1
Query:  229 DVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
            +V  A   AV +F VPAGF ++G+R DSF++SLG Y      V ++ + N  +F      C  + K IPCPKG +SNVN HLK  H+++G +G  +    +  Q +I SA+AA+T  G+G  R        H   + L                                KHLLVE+Y ATKK
Sbjct:   74 EVDAAVPTAVDNFSVPAGFVRKGSRVDSFMYSLGVY------VEKSGSTNHTYFCLASSKCRSNKKIIPCPKGDRSNVNTHLKRQHKMQGTEGVKKRNTKKETQTSIQSALAASTNSGLGKNRCASRSPPTHRTRRFLA----------------------------SASKHLLVEMYVATKK 222          
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 2.840e-8
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:  598 VKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
            VKEL A + +VEK+LP +F+SSG+  R ++A  G ++ +P L P+RVKHLL ELY ATKK
Sbjct:   35 VKELLAMRLLVEKLLPVSFFSSGDELRTLLALIG-DSDFPPLRPRRVKHLLTELYVATKK 93          
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5K6K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K2_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 1.720e-5
Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = -3
Query:    3 YRENHPHREQMRPNHRPRHSCSAAT 77
            YRENHPHREQM+PNHR RHSCSAAT
Sbjct:   29 YRENHPHREQMQPNHRARHSCSAAT 53          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5JJJ9_9PHAE2.470e-5657.84Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5KS21_9PHAE4.690e-3647.03Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KQP3_9PHAE4.650e-3091.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4W3_9PHAE5.990e-2938.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L4Z5_9PHAE8.750e-1987.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1G0_9PHAE4.060e-1834.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZ81_9PHAE2.840e-855.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K6K2_9PHAE1.720e-592.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig597contigP-littoralis_Contig597:19196..20222 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size778
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791227.3202686-UTR-P-littoralis_Contig597:19195..193771680791227.3202686-UTR-P-littoralis_Contig597:19195..19377Pylaiella littoralis U1_48UTRP-littoralis_Contig597 19196..19377 -
1680791227.3303905-UTR-P-littoralis_Contig597:19626..198641680791227.3303905-UTR-P-littoralis_Contig597:19626..19864Pylaiella littoralis U1_48UTRP-littoralis_Contig597 19627..19864 -
1680791227.3642733-UTR-P-littoralis_Contig597:20206..202221680791227.3642733-UTR-P-littoralis_Contig597:20206..20222Pylaiella littoralis U1_48UTRP-littoralis_Contig597 20207..20222 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791227.3516924-CDS-P-littoralis_Contig597:19864..202061680791227.3516924-CDS-P-littoralis_Contig597:19864..20206Pylaiella littoralis U1_48CDSP-littoralis_Contig597 19865..20206 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig597.2.2prot_P-littoralis_Contig597.2.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig597 19865..20206 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig597.2.2

>prot_P-littoralis_Contig597.2.2 ID=prot_P-littoralis_Contig597.2.2|Name=mRNA_P-littoralis_Contig597.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp
MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGA
PQESVNVKRPAPVFHVGGGSTTCRRLRRTLSRHSLCRPVSSRKAPARTPS
CSALETTTCPSVL*
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mRNA from alignment at P-littoralis_Contig597:19196..20222-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig597.2.2 ID=mRNA_P-littoralis_Contig597.2.2|Name=mRNA_P-littoralis_Contig597.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1027bp|location=Sequence derived from alignment at P-littoralis_Contig597:19196..20222- (Pylaiella littoralis U1_48)
ATAGTAGCAGCTGAGCATGAGTGACGCGGGCGGTGGTTCGGCCGCATCTG CTCCCGATGCGGGTGGTTCTCCCGGTACGAGTACCCTCGCACCGGGTTCT TCAACACAAGACGCGCAACAAGACAACGAGGTGGTCGTCGTGCCGGGCTC AACGAGTGGAGGAGCGCCACAGGAGTCAGTGAACGTCAAGCGTCCCGCAC CGGTCTTCCACGTTGGCGGAGGGAGTACGACGTGCCGGAGGCTACGAAGA ACGCTGTCGCGTCATTCGTTGTGCCGGCCGGTTTCCAGCAGGAAGGCGCC CGCGAGGACTCCTTCCTGTTCAGCCTTGGAAACTACTACGTGCCCGTCGG TGTTGTGAGTAGGACATCAGCGGAAAACAAAGCTTGGTTCAGGTGCCAGG TTGGCGGCTGCATCAAAGACGGCAAGACGATCCCTTGCCCGAAGGGGCAT AAGAGCAACGTCAACAAGCACCTAAAGGATTCGCACCAACTGCGTGGCGG CCAAGGAAAATCGAGGGAGCAGAGGGCGCAGACCAGACAAGGAAACATCG TCTCAGCTATGGCGGCGGCCACGACTTTTGGCGTTGGAGCCCGAAGGTGT GTGCTGTTCTGTACTGGACGATATTTATATTTATATTTATATTAATATCA ATATTTCAATTGCAATATTTTTATTTTTGTTCTGTACTGAGCCCTACGGA GTAAATGTATTTACATTTATATTTTAGTATAGTACAGCAGTATAGTACAG CAGCAGCATTTTGTAGAAGCAGTAGTTAGTTTAGTAGTAGTTTCATTTAC ATTGCGTGTTTAATGTTTATCTTGGTGCTTGTTATTTTCGTCCAGGGTGA AGGAACTGCAGGCGGCGAAGCACGTCGTGGAGAAAATGTTGCCGTTTACT TTCTACTCCAGCGGAGAGATGTTCAGGGAGATGATGGCGACCCACGGAGG AAACACGTCGTACCCAGAGCTGTCTCCGAAGCGTGTGAAACACCTCCTCG TCGAGTTGTACTGCGCCACGAAGAAGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig597:19196..20222-

>mRNA_P-littoralis_Contig597.2.2 ID=mRNA_P-littoralis_Contig597.2.2|Name=mRNA_P-littoralis_Contig597.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig597:19196..20222- (Pylaiella littoralis U1_48)
ATGAGTGACGCGGGCGGTGGTTCGGCCGCATCTGCTCCCGATGCGGGTGG
TTCTCCCGGTACGAGTACCCTCGCACCGGGTTCTTCAACACAAGACGCGC
AACAAGACAACGAGGTGGTCGTCGTGCCGGGCTCAACGAGTGGAGGAGCG
CCACAGGAGTCAGTGAACGTCAAGCGTCCCGCACCGGTCTTCCACGTTGG
CGGAGGGAGTACGACGTGCCGGAGGCTACGAAGAACGCTGTCGCGTCATT
CGTTGTGCCGGCCGGTTTCCAGCAGGAAGGCGCCCGCGAGGACTCCTTCC
TGTTCAGCCTTGGAAACTACTACGTGCCCGTCGGTGTTGTGA
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