mRNA_P-littoralis_Contig597.2.2 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5JJJ9_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJJ9_9PHAE) HSP 1 Score: 202 bits (515), Expect = 2.470e-56 Identity = 107/185 (57.84%), Postives = 133/185 (71.89%), Query Frame = 1
Query: 223 EYDVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
++ VP+ T +++ SF +Q+EGAREDSFL+SLGNY PV S + +++CQVG C KT PCPKG KSNVNKH ++ HQL G +G R + AQ QGNI +AM A+ TFGVG +RVKELQAAK VVEKMLPF+F+SSG F+EMMAT G +SYP L P+RVKHL+ ELY ATKK
Sbjct: 59 DFVVPQVTIDSIESFKAKDEYQREGAREDSFLYSLGNYAAPV----EKSGKWIGYYKCQVGKCRTSTKTTPCPKGSKSNVNKHFREVHQLVGAKGAVRMENAQNHQGNIRAAMGASKTFGVGGKRVKELQAAKLVVEKMLPFSFFSSGGTFKEMMATATGTSSYPTLPPRRVKHLITELYVATKK 239
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5KS21_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS21_9PHAE) HSP 1 Score: 142 bits (357), Expect = 4.690e-36 Identity = 87/185 (47.03%), Postives = 91/185 (49.19%), Query Frame = 1
Query: 223 EYDVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
EYDVPEATKNAVA+FVVP GFQQEGAREDSF++SLGNY VP AAK VVEKMLPF FYSSGEMFREMMATHGGNTSYPEL PKRVKHLLVELYC+TKK
Sbjct: 70 EYDVPEATKNAVAAFVVPTGFQQEGAREDSFMYSLGNYCVP-----------------------------------------------------------------------------------------AAKQVVEKMLPFHFYSSGEMFREMMATHGGNTSYPELPPKRVKHLLVELYCSTKK 165
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5KQP3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQP3_9PHAE) HSP 1 Score: 117 bits (294), Expect = 4.650e-30 Identity = 63/69 (91.30%), Postives = 64/69 (92.75%), Query Frame = 2
Query: 17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNVKRPAPVFHVGGG 223
MSDA GGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQ+SVNVKRP PVF GG
Sbjct: 1 MSDASGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQQSVNVKRPPPVFRASGG 69
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5K4W3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4W3_9PHAE) HSP 1 Score: 120 bits (301), Expect = 5.990e-29 Identity = 71/184 (38.59%), Postives = 110/184 (59.78%), Query Frame = 1
Query: 232 VPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVG-GCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGG-NTSYPELSPKRVKHLLVELYCATKK 777
+ AT AV +F P+GF ++G R+DSF++SLG Y +G ++K F C G C + K IPC +G +SNVN HLK H ++G G +++ R Q+ Q +I ++ + +G RV+EL K +VE+ L F F+S+ +M+R+ + NT YP L P+R+KHL+ E++ ATKK
Sbjct: 83 IAAATVAAVDNFQAPSGFVKKGCRQDSFMYSLGVYVEQIG-----GDQHK--FFCLAGPDCRRKKKVIPCRRGDRSNVNSHLKSVHGMQGKGGVTKQARRQSTQQSIGRSLTLSKNSQLGKNRVRELLCTKWLVERFLAFNFFSASDMWRQTIGFETAENTPYPPLPPERMKHLVAEMFLATKK 259
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5L4Z5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Z5_9PHAE) HSP 1 Score: 87.4 bits (215), Expect = 8.750e-19 Identity = 50/57 (87.72%), Postives = 52/57 (91.23%), Query Frame = 2
Query: 17 MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAPQESVNV 187
MSDA GGSAASAPDA GSPGTSTLAP SSTQDAQQDNEVVVVPGSTSGGAPQ+ + V
Sbjct: 1 MSDASGGSAASAPDADGSPGTSTLAPCSSTQDAQQDNEVVVVPGSTSGGAPQQFIIV 57
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5L1G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G0_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 4.060e-18 Identity = 63/183 (34.43%), Postives = 88/183 (48.09%), Query Frame = 1
Query: 229 DVPEATKNAVASFVVPAGFQQEGAREDSFLFSLGNYYVPVGVVSRTSAENKAWFRCQVGGCIKDGKTIPCPKGHKSNVNKHLKDSHQLRGGQGKSREQRAQTRQGNIVSAMAAATTFGVGARRVKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
+V A AV +F VPAGF ++G+R DSF++SLG Y V ++ + N +F C + K IPCPKG +SNVN HLK H+++G +G + + Q +I SA+AA+T G+G R H + L KHLLVE+Y ATKK
Sbjct: 74 EVDAAVPTAVDNFSVPAGFVRKGSRVDSFMYSLGVY------VEKSGSTNHTYFCLASSKCRSNKKIIPCPKGDRSNVNTHLKRQHKMQGTEGVKKRNTKKETQTSIQSALAASTNSGLGKNRCASRSPPTHRTRRFLA----------------------------SASKHLLVEMYVATKK 222
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5KZ81_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ81_9PHAE) HSP 1 Score: 64.3 bits (155), Expect = 2.840e-8 Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query: 598 VKELQAAKHVVEKMLPFTFYSSGEMFREMMATHGGNTSYPELSPKRVKHLLVELYCATKK 777
VKEL A + +VEK+LP +F+SSG+ R ++A G ++ +P L P+RVKHLL ELY ATKK
Sbjct: 35 VKELLAMRLLVEKLLPVSFFSSGDELRTLLALIG-DSDFPPLRPRRVKHLLTELYVATKK 93
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Match: A0A6H5K6K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6K2_9PHAE) HSP 1 Score: 52.8 bits (125), Expect = 1.720e-5 Identity = 23/25 (92.00%), Postives = 24/25 (96.00%), Query Frame = -3
Query: 3 YRENHPHREQMRPNHRPRHSCSAAT 77
YRENHPHREQM+PNHR RHSCSAAT
Sbjct: 29 YRENHPHREQMQPNHRARHSCSAAT 53 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig597.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig597.2.2 >prot_P-littoralis_Contig597.2.2 ID=prot_P-littoralis_Contig597.2.2|Name=mRNA_P-littoralis_Contig597.2.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=114bp MSDAGGGSAASAPDAGGSPGTSTLAPGSSTQDAQQDNEVVVVPGSTSGGAback to top mRNA from alignment at P-littoralis_Contig597:19196..20222- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig597.2.2 ID=mRNA_P-littoralis_Contig597.2.2|Name=mRNA_P-littoralis_Contig597.2.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1027bp|location=Sequence derived from alignment at P-littoralis_Contig597:19196..20222- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig597:19196..20222- >mRNA_P-littoralis_Contig597.2.2 ID=mRNA_P-littoralis_Contig597.2.2|Name=mRNA_P-littoralis_Contig597.2.2|organism=Pylaiella littoralis U1_48|type=CDS|length=342bp|location=Sequence derived from alignment at P-littoralis_Contig597:19196..20222- (Pylaiella littoralis U1_48)back to top |