prot_P-littoralis_Contig595.25.1 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig595.25.1
Unique Nameprot_P-littoralis_Contig595.25.1
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length112
Homology
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BLAST of mRNA_P-littoralis_Contig595.25.1 vs. uniprot
Match: A0A6H5JW95_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW95_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.790e-15
Identity = 49/102 (48.04%), Postives = 60/102 (58.82%), Query Frame = 0 
Query:   14 SVHTGG---GAFQTQTQRRMEKLFTDQRVAGWST-RERTAVVDSGRVLPPPIERRSLQGYMFDAIEVTSEVADSLLRCCDFRPSAFSPRAAPSSTIPMATHL 111
            +V +GG   G   + +QRRMEK+ +DQRV  WS    R   V  G   PP +E+ SLQG M D+ EVT  VAD LL    F P AF+PR A    IP+ATHL
Sbjct:  163 NVDSGGYGMGTGMSHSQRRMEKVLSDQRVNAWSAVNSRMWWVVMG-CFPPKLEKPSLQGLMHDSFEVTDAVADMLLNFRGFDPVAFAPRGAGGERIPIATHL 263
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig595.25.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW95_9PHAE7.790e-1548.04C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig595contigP-littoralis_Contig595:181053..181388 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig595.25.1mRNA_P-littoralis_Contig595.25.1Pylaiella littoralis U1_48mRNAP-littoralis_Contig595 181053..181389 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig595.25.1 ID=prot_P-littoralis_Contig595.25.1|Name=mRNA_P-littoralis_Contig595.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
RDGPVLGNPHSLASVHTGGGAFQTQTQRRMEKLFTDQRVAGWSTRERTAV
VDSGRVLPPPIERRSLQGYMFDAIEVTSEVADSLLRCCDFRPSAFSPRAA
PSSTIPMATHLR
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