mRNA_P-littoralis_Contig595.25.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig595.25.1
Unique NamemRNA_P-littoralis_Contig595.25.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig595.25.1 vs. uniprot
Match: A0A6H5JW95_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW95_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 7.790e-15
Identity = 49/102 (48.04%), Postives = 60/102 (58.82%), Query Frame = 1 
Query:   40 SVHTGG---GAFQTQTQRRMEKLFTDQRVAGWST-RERTAVVDSGRVLPPPIERRSLQGYMFDAIEVTSEVADSLLRCCDFRPSAFSPRAAPSSTIPMATHL 333
            +V +GG   G   + +QRRMEK+ +DQRV  WS    R   V  G   PP +E+ SLQG M D+ EVT  VAD LL    F P AF+PR A    IP+ATHL
Sbjct:  163 NVDSGGYGMGTGMSHSQRRMEKVLSDQRVNAWSAVNSRMWWVVMG-CFPPKLEKPSLQGLMHDSFEVTDAVADMLLNFRGFDPVAFAPRGAGGERIPIATHL 263
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig595.25.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JW95_9PHAE7.790e-1548.04C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig595contigP-littoralis_Contig595:181053..181389 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size339
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791225.0025213-CDS-P-littoralis_Contig595:181052..1813881680791225.0025213-CDS-P-littoralis_Contig595:181052..181388Pylaiella littoralis U1_48CDSP-littoralis_Contig595 181053..181388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig595.25.1prot_P-littoralis_Contig595.25.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig595 181053..181388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig595.25.1

>prot_P-littoralis_Contig595.25.1 ID=prot_P-littoralis_Contig595.25.1|Name=mRNA_P-littoralis_Contig595.25.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=112bp
RDGPVLGNPHSLASVHTGGGAFQTQTQRRMEKLFTDQRVAGWSTRERTAV
VDSGRVLPPPIERRSLQGYMFDAIEVTSEVADSLLRCCDFRPSAFSPRAA
PSSTIPMATHLR
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mRNA from alignment at P-littoralis_Contig595:181053..181389+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig595.25.1 ID=mRNA_P-littoralis_Contig595.25.1|Name=mRNA_P-littoralis_Contig595.25.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=337bp|location=Sequence derived from alignment at P-littoralis_Contig595:181053..181389+ (Pylaiella littoralis U1_48)
CGGGATGGGCCGGTGCTGGGCAACCCGCACAGCTTGGCTTCGGTCCATAC
GGGGGGGGGAGCATTCCAGACCCAGACGCAGCGACGGATGGAAAAGCTGT
TTACGGACCAGCGCGTCGCGGGGTGGAGTACGAGGGAGCGGACGGCGGTG
GTGGATAGTGGCCGGGTGCTTCCCCCGCCCATCGAGCGCCGGTCGCTCCA
GGGATATATGTTCGACGCCATCGAGGTAACGTCGGAGGTCGCCGACTCGC
TGCTGCGGTGCTGCGACTTTCGCCCCTCCGCCTTCTCGCCCCGCGCGGCG
CCGTCGAGCACCATCCCCATGGCAACACACCTTCGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig595:181053..181389+

>mRNA_P-littoralis_Contig595.25.1 ID=mRNA_P-littoralis_Contig595.25.1|Name=mRNA_P-littoralis_Contig595.25.1|organism=Pylaiella littoralis U1_48|type=CDS|length=336bp|location=Sequence derived from alignment at P-littoralis_Contig595:181053..181389+ (Pylaiella littoralis U1_48)
CGGGATGGGCCGGTGCTGGGCAACCCGCACAGCTTGGCTTCGGTCCATAC
GGGGGGGGGAGCATTCCAGACCCAGACGCAGCGACGGATGGAAAAGCTGT
TTACGGACCAGCGCGTCGCGGGGTGGAGTACGAGGGAGCGGACGGCGGTG
GTGGATAGTGGCCGGGTGCTTCCCCCGCCCATCGAGCGCCGGTCGCTCCA
GGGATATATGTTCGACGCCATCGAGGTAACGTCGGAGGTCGCCGACTCGC
TGCTGCGGTGCTGCGACTTTCGCCCCTCCGCCTTCTCGCCCCGCGCGGCG
CCGTCGAGCACCATCCCCATGGCAACACACCTTCGC
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