mRNA_P-littoralis_Contig115.79.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig115.79.1
Unique NamemRNA_P-littoralis_Contig115.79.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE)

HSP 1 Score: 207 bits (528), Expect = 1.150e-62
Identity = 99/173 (57.23%), Postives = 125/173 (72.25%), Query Frame = 1
Query:    1 RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
            RR+RRSW  Y++P++ DG+FR  FRM + EF +L DMLRP+LERN  MG LRNG +PVE+Q+   LR+LAGG + ++  G+VIA+STAY    RV+ AIN  +ELDC WP+ +         +R RSTNGV+  CVGAMDGLF+RMT+P  R    P SFYSGHKKGFGMNFQ
Sbjct:   47 RRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 2.050e-58
Identity = 93/178 (52.25%), Postives = 125/178 (70.22%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQT-----EFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
            R+RR +  Y +P+L D +F   FRM +D+F VLVD LRP L++N   G LRNGA+PVEYQV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ +       F++ A      +   V+ KCVGAMDGLF+RM +P +++  EPN +Y+GHKKGFGMNFQV
Sbjct:   52 RERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATA------ALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 3.630e-56
Identity = 92/172 (53.49%), Postives = 122/172 (70.93%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
            R+RRS+  Y  P++ D +FR  FRM + +FM L D+LRP+L+R+  MG LRNGA+PVE+Q+  TLR+LAGG + ++   +VIAKSTAY    RV+ AIN  ++L+C+WP      A  AE +R RSTNGV+ +CVGAMDGLF+R+  P  +    P SFYSGHKK FGMNFQ
Sbjct:   52 RERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQ-AELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE)

HSP 1 Score: 181 bits (460), Expect = 1.590e-52
Identity = 83/144 (57.64%), Postives = 110/144 (76.39%), Query Frame = 1
Query:   94 MVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
            +VLVD LRP L++N  MG LRNGA+PVE QV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ + + A  AE FR+RS+  V+ KCVGA DGLF+RM +P +++  EPN +Y+GHKKGFGMNFQ +
Sbjct:   71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAV 213          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE)

HSP 1 Score: 175 bits (443), Expect = 7.550e-51
Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKG 501
            R+RR +  + +P+L D +F   FRM +D+F VL+D LRP L +N  MG LR GA+PVEYQ+  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ + +               V+ KCVGAMDGLF+RM +P +++  EPN +Y+GH+KG
Sbjct:   52 RERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 1.040e-48
Identity = 75/127 (59.06%), Postives = 98/127 (77.17%), Query Frame = 1
Query:  142 MGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
            MG LRNGA+PVE QV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ + + A  AE FR+RS+  V+ KCVGAMD LF+RM +P +++  EPN +Y+GHKKGFGMNFQV
Sbjct:    1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE)

HSP 1 Score: 105 bits (261), Expect = 7.620e-26
Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query:  142 MGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGA 414
            MG LRNGA+PVEYQV  TLRWLAGG +++   GHVIA+STAY   + V+ A+NAC EL+C+WP+ + + A  AE FR+RS+ G   +  G+
Sbjct:    1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGS 90          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.750e-25
Identity = 54/100 (54.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:    4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINA 303
            R RR +  Y +P+L D +F   FRM +D+F VLVD LRP L++N  MG LRNGA+PVEYQV  TLRWLAGG  ++   GHVIA+STAY         I A
Sbjct:   52 RVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMA 151          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.140e-25
Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query:  241 HVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
            HVIA+STAY   + V+ A+NAC E++C+WP+ + + A  AE FR+RS+  V+ KCVGAMDG F+RM +P +++  EPN   +GHKKGFG NFQ 
Sbjct:    4 HVIARSTAYHETSTVINALNACSEVNCKWPEGE-DAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQA 96          
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.070e-24
Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 1
Query:  211 GGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
            GG + ++  G V AKSTAY    RV+ AIN  +E DC WP+           +R RSTN V+  CVGAMDGLF+ +  P  R    P  FYSGHKKGFGMNFQ +
Sbjct:   51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGV-YRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5K3F2_9PHAE1.150e-6257.23DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JJA1_9PHAE2.050e-5852.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6M2_9PHAE3.630e-5653.49DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5L6B6_9PHAE1.590e-5257.64DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JVS8_9PHAE7.550e-5148.19DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KD49_9PHAE1.040e-4859.06Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9B3_9PHAE7.620e-2653.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K540_9PHAE1.750e-2554.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JYU2_9PHAE5.140e-2553.19Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KCG0_9PHAE3.070e-2449.52DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig115contigP-littoralis_Contig115:207414..207938 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog72019.SARC_10743T0
Model size525
Max annot lvl72019.SARC_10743T0|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.4e-23
EggNOG OGs2D5T8@1|root,2SZJJ@2759|Eukaryota
Cds size525
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789470.393654-CDS-P-littoralis_Contig115:207413..2079381680789470.393654-CDS-P-littoralis_Contig115:207413..207938Pylaiella littoralis U1_48CDSP-littoralis_Contig115 207414..207938 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig115.79.1prot_P-littoralis_Contig115.79.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig115 207414..207938 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig115.79.1

>prot_P-littoralis_Contig115.79.1 ID=prot_P-littoralis_Contig115.79.1|Name=mRNA_P-littoralis_Contig115.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp
RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGR
LRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAIN
ACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPI
SRDTHEPNSFYSGHKKGFGMNFQVM
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mRNA from alignment at P-littoralis_Contig115:207414..207938-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig115.79.1 ID=mRNA_P-littoralis_Contig115.79.1|Name=mRNA_P-littoralis_Contig115.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig115:207414..207938- (Pylaiella littoralis U1_48)
CGGCGTGACCGGCGAAGTTGGGCTGTGTACAGCGAGCCCATATTGGCAGA CGGGAGCTTTAGACCGAGTTTCCGCATGGGCCACGACGAGTTCATGGTTC TGGTGGATATGCTTCGCCCCGAACTGGAAAGAAACCCTCACATGGGCCGC CTCCGCAATGGCGCTCTCCCAGTAGAGTACCAGGTCGGAAATACTCTGCG ATGGTTGGCGGGCGGTGAAATGCACGACATAAAGCAAGGCCACGTGATCG CCAAGAGTACGGCGTATCAGACAGCAGCCCGCGTCATGAAGGCCATCAAT GCCTGCAAGGAGTTGGATTGCCGGTGGCCCAAGAACCAGACGGAGTTCGC CAGCATCGCGGAGGGGTTCAGGGACCGCAGCACAAACGGTGTGATGGCCA AGTGCGTGGGAGCCATGGATGGGCTTTTCATCCGCATGACGAGGCCGATC TCTCGCGACACCCACGAGCCCAACTCCTTCTACAGCGGCCACAAGAAGGG TTTCGGGATGAATTTTCAGGTAATG
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Coding sequence (CDS) from alignment at P-littoralis_Contig115:207414..207938-

>mRNA_P-littoralis_Contig115.79.1 ID=mRNA_P-littoralis_Contig115.79.1|Name=mRNA_P-littoralis_Contig115.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig115:207414..207938- (Pylaiella littoralis U1_48)
CGGCGTGACCGGCGAAGTTGGGCTGTGTACAGCGAGCCCATATTGGCAGA
CGGGAGCTTTAGACCGAGTTTCCGCATGGGCCACGACGAGTTCATGGTTC
TGGTGGATATGCTTCGCCCCGAACTGGAAAGAAACCCTCACATGGGCCGC
CTCCGCAATGGCGCTCTCCCAGTAGAGTACCAGGTCGGAAATACTCTGCG
ATGGTTGGCGGGCGGTGAAATGCACGACATAAAGCAAGGCCACGTGATCG
CCAAGAGTACGGCGTATCAGACAGCAGCCCGCGTCATGAAGGCCATCAAT
GCCTGCAAGGAGTTGGATTGCCGGTGGCCCAAGAACCAGACGGAGTTCGC
CAGCATCGCGGAGGGGTTCAGGGACCGCAGCACAAACGGTGTGATGGCCA
AGTGCGTGGGAGCCATGGATGGGCTTTTCATCCGCATGACGAGGCCGATC
TCTCGCGACACCCACGAGCCCAACTCCTTCTACAGCGGCCACAAGAAGGG
TTTCGGGATGAATTTTCAGGTAATG
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