mRNA_P-littoralis_Contig115.79.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 207 bits (528), Expect = 1.150e-62 Identity = 99/173 (57.23%), Postives = 125/173 (72.25%), Query Frame = 1
Query: 1 RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
RR+RRSW Y++P++ DG+FR FRM + EF +L DMLRP+LERN MG LRNG +PVE+Q+ LR+LAGG + ++ G+VIA+STAY RV+ AIN +ELDC WP+ + +R RSTNGV+ CVGAMDGLF+RMT+P R P SFYSGHKKGFGMNFQ
Sbjct: 47 RRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGM-YRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQ 218
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 196 bits (498), Expect = 2.050e-58 Identity = 93/178 (52.25%), Postives = 125/178 (70.22%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQT-----EFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
R+RR + Y +P+L D +F FRM +D+F VLVD LRP L++N G LRNGA+PVEYQV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + F++ A + V+ KCVGAMDGLF+RM +P +++ EPN +Y+GHKKGFGMNFQV
Sbjct: 52 RERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATA------ALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 223
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 191 bits (485), Expect = 3.630e-56 Identity = 92/172 (53.49%), Postives = 122/172 (70.93%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQ 519
R+RRS+ Y P++ D +FR FRM + +FM L D+LRP+L+R+ MG LRNGA+PVE+Q+ TLR+LAGG + ++ +VIAKSTAY RV+ AIN ++L+C+WP A AE +R RSTNGV+ +CVGAMDGLF+R+ P + P SFYSGHKK FGMNFQ
Sbjct: 52 RERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQ-AELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQ 222
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 181 bits (460), Expect = 1.590e-52 Identity = 83/144 (57.64%), Postives = 110/144 (76.39%), Query Frame = 1
Query: 94 MVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
+VLVD LRP L++N MG LRNGA+PVE QV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + + A AE FR+RS+ V+ KCVGA DGLF+RM +P +++ EPN +Y+GHKKGFGMNFQ +
Sbjct: 71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAV 213
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 175 bits (443), Expect = 7.550e-51 Identity = 80/166 (48.19%), Postives = 113/166 (68.07%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKG 501
R+RR + + +P+L D +F FRM +D+F VL+D LRP L +N MG LR GA+PVEYQ+ TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + + V+ KCVGAMDGLF+RM +P +++ EPN +Y+GH+KG
Sbjct: 52 RERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARMD---------------VVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKG 202
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 163 bits (412), Expect = 1.040e-48 Identity = 75/127 (59.06%), Postives = 98/127 (77.17%), Query Frame = 1
Query: 142 MGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
MG LRNGA+PVE QV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + + A AE FR+RS+ V+ KCVGAMD LF+RM +P +++ EPN +Y+GHKKGFGMNFQV
Sbjct: 1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQV 126
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5J9B3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9B3_9PHAE) HSP 1 Score: 105 bits (261), Expect = 7.620e-26 Identity = 49/91 (53.85%), Postives = 66/91 (72.53%), Query Frame = 1
Query: 142 MGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGA 414
MG LRNGA+PVEYQV TLRWLAGG +++ GHVIA+STAY + V+ A+NAC EL+C+WP+ + + A AE FR+RS+ G + G+
Sbjct: 1 MGLLRNGAIPVEYQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGE-DAAGAAELFRNRSSYGCRPEVRGS 90
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 109 bits (272), Expect = 1.750e-25 Identity = 54/100 (54.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query: 4 RDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRLRNGALPVEYQVGNTLRWLAGGEMHDIKQGHVIAKSTAYQTAARVMKAINA 303
R RR + Y +P+L D +F FRM +D+F VLVD LRP L++N MG LRNGA+PVEYQV TLRWLAGG ++ GHVIA+STAY I A
Sbjct: 52 RVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAYHAVCDAQYRIMA 151
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5JYU2_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYU2_9PHAE) HSP 1 Score: 110 bits (276), Expect = 5.140e-25 Identity = 50/94 (53.19%), Postives = 69/94 (73.40%), Query Frame = 1
Query: 241 HVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQV 522
HVIA+STAY + V+ A+NAC E++C+WP+ + + A AE FR+RS+ V+ KCVGAMDG F+RM +P +++ EPN +GHKKGFG NFQ
Sbjct: 4 HVIARSTAYHETSTVINALNACSEVNCKWPEGE-DAARAAELFRNRSSIDVVRKCVGAMDGFFVRMIKPSAKEVVEPNLCNNGHKKGFGTNFQA 96
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 106 bits (264), Expect = 3.070e-24 Identity = 52/105 (49.52%), Postives = 63/105 (60.00%), Query Frame = 1
Query: 211 GGEMHDIKQGHVIAKSTAYQTAARVMKAINACKELDCRWPKNQTEFASIAEGFRDRSTNGVMAKCVGAMDGLFIRMTRPISRDTHEPNSFYSGHKKGFGMNFQVM 525
GG + ++ G V AKSTAY RV+ AIN +E DC WP+ +R RSTN V+ CVGAMDGLF+ + P R P FYSGHKKGFGMNFQ +
Sbjct: 51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGV-YRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAV 154 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig115.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig115.79.1 >prot_P-littoralis_Contig115.79.1 ID=prot_P-littoralis_Contig115.79.1|Name=mRNA_P-littoralis_Contig115.79.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=175bp RRDRRSWAVYSEPILADGSFRPSFRMGHDEFMVLVDMLRPELERNPHMGRback to top mRNA from alignment at P-littoralis_Contig115:207414..207938- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig115.79.1 ID=mRNA_P-littoralis_Contig115.79.1|Name=mRNA_P-littoralis_Contig115.79.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig115:207414..207938- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig115:207414..207938- >mRNA_P-littoralis_Contig115.79.1 ID=mRNA_P-littoralis_Contig115.79.1|Name=mRNA_P-littoralis_Contig115.79.1|organism=Pylaiella littoralis U1_48|type=CDS|length=525bp|location=Sequence derived from alignment at P-littoralis_Contig115:207414..207938- (Pylaiella littoralis U1_48)back to top |