mRNA_P-littoralis_Contig1144.6.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5K3V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V5_9PHAE) HSP 1 Score: 246 bits (627), Expect = 5.010e-79 Identity = 134/175 (76.57%), Postives = 143/175 (81.71%), Query Frame = 1
Query: 64 PHILDAAELGLEAWKKVSPETIKSC------WRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWL------GVGDYCRFGGRS-L*EVACPPEHRPTEHRLRRRRGRLFGGRRGTVYAAPGLSSSATVR 549
PHILDAAELGLEAWK+V P+TIKSC WR CDILPPAVHADLDQDVGKNIRNKK+SLEELTDLVQRLSLEAKKTTVDE+LGEAL+GLGLAPGATPTRASMEAVQTWL GV + + L E + +H PTEHRL RRRGR FGGRRGTVYAAP LSSSATVR
Sbjct: 9 PHILDAAELGLEAWKEVMPQTIKSCVRVVVCWRKCDILPPAVHADLDQDVGKNIRNKKESLEELTDLVQRLSLEAKKTTVDEDLGEALEGLGLAPGATPTRASMEAVQTWLRAAEKEGVAEAIIADLKDDLCEESLAHQHGPTEHRLGRRRGRRFGGRRGTVYAAPSLSSSATVR 183
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JB59_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB59_9PHAE) HSP 1 Score: 197 bits (500), Expect = 3.250e-57 Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 2
Query: 368 RHGWV*AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
+ G A I DL+DDLCE+SLAHLN+DQLNIDSDDDEADSSAGDEG+CTQPLVSPRPPPYADVSR+FGDLEEIAERCSMAGVAYHL KAKLAWMSEAGSKKTKQTRMADFM
Sbjct: 277 KEGIAEANIEDLKDDLCEESLAHLNMDQLNIDSDDDEADSSAGDEGKCTQPLVSPRPPPYADVSRKFGDLEEIAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTRMADFM 387
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JHY0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY0_9PHAE) HSP 1 Score: 196 bits (497), Expect = 5.080e-56 Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 2
Query: 386 AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEI-AERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
AIIADL+DDLCE+SLAHLN DQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEI AERCSMAGVAYHL KAKLAWMSEAGSKKTKQT MADFM
Sbjct: 354 AIIADLKDDLCEESLAHLNTDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIIAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTCMADFM 459
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JRP4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP4_9PHAE) HSP 1 Score: 195 bits (496), Expect = 3.210e-55 Identity = 98/111 (88.29%), Postives = 103/111 (92.79%), Query Frame = 2
Query: 368 RHGWV*AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
+ G AIIADL+DDLCE+SLAHLN+DQLNIDSDDDEADS AGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHL KAK+AWMSEAGSKKTKQT MAD M
Sbjct: 421 KEGVAEAIIADLKDDLCEESLAHLNMDQLNIDSDDDEADSLAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLRKAKIAWMSEAGSKKTKQTCMADSM 531
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JV28_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV28_9PHAE) HSP 1 Score: 187 bits (474), Expect = 2.720e-54 Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 1
Query: 64 PHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWL 378
PHILDAAELGLEAWK+ PETIK CWR CD LPPAVHADLDQDVGKNIRNKK+SLEELTD VQRLSLE KKTTVDE+LGEAL+GLGL PGATPTRAS+EAVQTW+
Sbjct: 177 PHILDAAELGLEAWKEFLPETIKRCWRKCDTLPPAVHADLDQDVGKNIRNKKESLEELTDSVQRLSLETKKTTVDEDLGEALKGLGLTPGATPTRASIEAVQTWM 281
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5KT98_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT98_9PHAE) HSP 1 Score: 190 bits (482), Expect = 4.880e-54 Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1
Query: 64 PHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWLGVGD 390
PHILDAAELGLEAWK+V PETIK CWR CD+LP AVHADLD+DVGKN+RNKK+SLEELTDLVQRLSLEAKKTTVDE+LGEAL+GLGLAPGATPTRAS +AVQTWL V D
Sbjct: 276 PHILDAAELGLEAWKEVLPETIKRCWRKCDMLPSAVHADLDEDVGKNMRNKKESLEELTDLVQRLSLEAKKTTVDEDLGEALKGLGLAPGATPTRASTKAVQTWLRVED 384
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5K2U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U1_9PHAE) HSP 1 Score: 186 bits (471), Expect = 7.030e-54 Identity = 97/134 (72.39%), Postives = 110/134 (82.09%), Query Frame = 2
Query: 368 RHGWV*AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM*IKLQKLPTGDVHGSLFFGFLRV 769
+ G AIIADL+D+LCE+SLAHLN+DQLN SDDDEADSS GDEGQCTQPLVSPRPP YADVS QFGDLEEIA+RCSMAG+AYHL KAKLAWMSEAGSKKTKQT MADFM + P + +FF +++V
Sbjct: 160 KEGVAGAIIADLKDNLCEESLAHLNMDQLNKHSDDDEADSSVGDEGQCTQPLVSPRPPQYADVSMQFGDLEEIAKRCSMAGIAYHLRKAKLAWMSEAGSKKTKQTCMADFM-SSCRSCPQA-MFMDVFFPYIKV 291
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5K2E1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E1_9PHAE) HSP 1 Score: 191 bits (486), Expect = 7.080e-53 Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 1
Query: 64 PHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWLGV 384
PH LDAAEL LEAWK+V PETIK CWR CDILPPAVHADLDQDVGKNIRNKK+SLEELTDLVQRLSLEAK TTVDE+LGEAL+GLGLAPGATPTRASMEAVQTWL V
Sbjct: 436 PHSLDAAELDLEAWKEVLPETIKRCWRKCDILPPAVHADLDQDVGKNIRNKKESLEELTDLVQRLSLEAKTTTVDEDLGEALKGLGLAPGATPTRASMEAVQTWLRV 542
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JNH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH8_9PHAE) HSP 1 Score: 161 bits (407), Expect = 6.000e-43 Identity = 84/105 (80.00%), Postives = 87/105 (82.86%), Query Frame = 2
Query: 386 AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
AIIADL+DDLCE+SLAHLN+DQ S AGDEGQCTQ LV PRPPPYADVSRQF DLEE AERCSMAGVAYHL KAKLAWMSEAGSKKTKQT MADFM
Sbjct: 338 AIIADLKDDLCEESLAHLNMDQXXXXXXXXXXXSLAGDEGQCTQTLVYPRPPPYADVSRQFVDLEEKAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTCMADFM 442
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: D7FWQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ1_ECTSI) HSP 1 Score: 127 bits (319), Expect = 5.690e-34 Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 1
Query: 1 MDCAVCMTRLATARCTVFATDPHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLE 231
MDCAVC+TRLAT R PHILDAAELGLEAWK+VS ETIK CWR CDILPPAVHADLDQDVGKNI NKK++L+
Sbjct: 1 MDCAVCLTRLATTRWLAEGGQPHILDAAELGLEAWKEVSAETIKRCWRKCDILPPAVHADLDQDVGKNIPNKKENLD 77 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 14
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1144.6.1 >prot_P-littoralis_Contig1144.6.1 ID=prot_P-littoralis_Contig1144.6.1|Name=mRNA_P-littoralis_Contig1144.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp MDCAVCMTRLATARCTVFATDPHILDAAELGLEAWKKVSPETIKSCWRNCback to top mRNA from alignment at P-littoralis_Contig1144:44901..46086+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1144.6.1 ID=mRNA_P-littoralis_Contig1144.6.1|Name=mRNA_P-littoralis_Contig1144.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1186bp|location=Sequence derived from alignment at P-littoralis_Contig1144:44901..46086+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1144:44901..46086+ >mRNA_P-littoralis_Contig1144.6.1 ID=mRNA_P-littoralis_Contig1144.6.1|Name=mRNA_P-littoralis_Contig1144.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1144:44901..46086+ (Pylaiella littoralis U1_48)back to top |