mRNA_P-littoralis_Contig1144.6.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1144.6.1
Unique NamemRNA_P-littoralis_Contig1144.6.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5K3V5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V5_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 5.010e-79
Identity = 134/175 (76.57%), Postives = 143/175 (81.71%), Query Frame = 1
Query:   64 PHILDAAELGLEAWKKVSPETIKSC------WRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWL------GVGDYCRFGGRS-L*EVACPPEHRPTEHRLRRRRGRLFGGRRGTVYAAPGLSSSATVR 549
            PHILDAAELGLEAWK+V P+TIKSC      WR CDILPPAVHADLDQDVGKNIRNKK+SLEELTDLVQRLSLEAKKTTVDE+LGEAL+GLGLAPGATPTRASMEAVQTWL      GV +      +  L E +   +H PTEHRL RRRGR FGGRRGTVYAAP LSSSATVR
Sbjct:    9 PHILDAAELGLEAWKEVMPQTIKSCVRVVVCWRKCDILPPAVHADLDQDVGKNIRNKKESLEELTDLVQRLSLEAKKTTVDEDLGEALEGLGLAPGATPTRASMEAVQTWLRAAEKEGVAEAIIADLKDDLCEESLAHQHGPTEHRLGRRRGRRFGGRRGTVYAAPSLSSSATVR 183          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JB59_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB59_9PHAE)

HSP 1 Score: 197 bits (500), Expect = 3.250e-57
Identity = 98/111 (88.29%), Postives = 104/111 (93.69%), Query Frame = 2
Query:  368 RHGWV*AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
            + G   A I DL+DDLCE+SLAHLN+DQLNIDSDDDEADSSAGDEG+CTQPLVSPRPPPYADVSR+FGDLEEIAERCSMAGVAYHL KAKLAWMSEAGSKKTKQTRMADFM
Sbjct:  277 KEGIAEANIEDLKDDLCEESLAHLNMDQLNIDSDDDEADSSAGDEGKCTQPLVSPRPPPYADVSRKFGDLEEIAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTRMADFM 387          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JHY0_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY0_9PHAE)

HSP 1 Score: 196 bits (497), Expect = 5.080e-56
Identity = 100/106 (94.34%), Postives = 102/106 (96.23%), Query Frame = 2
Query:  386 AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEI-AERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
            AIIADL+DDLCE+SLAHLN DQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEI AERCSMAGVAYHL KAKLAWMSEAGSKKTKQT MADFM
Sbjct:  354 AIIADLKDDLCEESLAHLNTDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIIAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTCMADFM 459          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JRP4_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRP4_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 3.210e-55
Identity = 98/111 (88.29%), Postives = 103/111 (92.79%), Query Frame = 2
Query:  368 RHGWV*AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
            + G   AIIADL+DDLCE+SLAHLN+DQLNIDSDDDEADS AGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHL KAK+AWMSEAGSKKTKQT MAD M
Sbjct:  421 KEGVAEAIIADLKDDLCEESLAHLNMDQLNIDSDDDEADSLAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLRKAKIAWMSEAGSKKTKQTCMADSM 531          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JV28_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV28_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 2.720e-54
Identity = 91/105 (86.67%), Postives = 97/105 (92.38%), Query Frame = 1
Query:   64 PHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWL 378
            PHILDAAELGLEAWK+  PETIK CWR CD LPPAVHADLDQDVGKNIRNKK+SLEELTD VQRLSLE KKTTVDE+LGEAL+GLGL PGATPTRAS+EAVQTW+
Sbjct:  177 PHILDAAELGLEAWKEFLPETIKRCWRKCDTLPPAVHADLDQDVGKNIRNKKESLEELTDSVQRLSLETKKTTVDEDLGEALKGLGLTPGATPTRASIEAVQTWM 281          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5KT98_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT98_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 4.880e-54
Identity = 94/109 (86.24%), Postives = 102/109 (93.58%), Query Frame = 1
Query:   64 PHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWLGVGD 390
            PHILDAAELGLEAWK+V PETIK CWR CD+LP AVHADLD+DVGKN+RNKK+SLEELTDLVQRLSLEAKKTTVDE+LGEAL+GLGLAPGATPTRAS +AVQTWL V D
Sbjct:  276 PHILDAAELGLEAWKEVLPETIKRCWRKCDMLPSAVHADLDEDVGKNMRNKKESLEELTDLVQRLSLEAKKTTVDEDLGEALKGLGLAPGATPTRASTKAVQTWLRVED 384          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5K2U1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2U1_9PHAE)

HSP 1 Score: 186 bits (471), Expect = 7.030e-54
Identity = 97/134 (72.39%), Postives = 110/134 (82.09%), Query Frame = 2
Query:  368 RHGWV*AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM*IKLQKLPTGDVHGSLFFGFLRV 769
            + G   AIIADL+D+LCE+SLAHLN+DQLN  SDDDEADSS GDEGQCTQPLVSPRPP YADVS QFGDLEEIA+RCSMAG+AYHL KAKLAWMSEAGSKKTKQT MADFM    +  P   +   +FF +++V
Sbjct:  160 KEGVAGAIIADLKDNLCEESLAHLNMDQLNKHSDDDEADSSVGDEGQCTQPLVSPRPPQYADVSMQFGDLEEIAKRCSMAGIAYHLRKAKLAWMSEAGSKKTKQTCMADFM-SSCRSCPQA-MFMDVFFPYIKV 291          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5K2E1_9PHAE (HTH CENPB-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E1_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 7.080e-53
Identity = 96/107 (89.72%), Postives = 100/107 (93.46%), Query Frame = 1
Query:   64 PHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLGEALQGLGLAPGATPTRASMEAVQTWLGV 384
            PH LDAAEL LEAWK+V PETIK CWR CDILPPAVHADLDQDVGKNIRNKK+SLEELTDLVQRLSLEAK TTVDE+LGEAL+GLGLAPGATPTRASMEAVQTWL V
Sbjct:  436 PHSLDAAELDLEAWKEVLPETIKRCWRKCDILPPAVHADLDQDVGKNIRNKKESLEELTDLVQRLSLEAKTTTVDEDLGEALKGLGLAPGATPTRASMEAVQTWLRV 542          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: A0A6H5JNH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH8_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 6.000e-43
Identity = 84/105 (80.00%), Postives = 87/105 (82.86%), Query Frame = 2
Query:  386 AIIADLEDDLCEKSLAHLNIDQLNIDSDDDEADSSAGDEGQCTQPLVSPRPPPYADVSRQFGDLEEIAERCSMAGVAYHLHKAKLAWMSEAGSKKTKQTRMADFM 700
            AIIADL+DDLCE+SLAHLN+DQ           S AGDEGQCTQ LV PRPPPYADVSRQF DLEE AERCSMAGVAYHL KAKLAWMSEAGSKKTKQT MADFM
Sbjct:  338 AIIADLKDDLCEESLAHLNMDQXXXXXXXXXXXSLAGDEGQCTQTLVYPRPPPYADVSRQFVDLEEKAERCSMAGVAYHLRKAKLAWMSEAGSKKTKQTCMADFM 442          
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Match: D7FWQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWQ1_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 5.690e-34
Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 1
Query:    1 MDCAVCMTRLATARCTVFATDPHILDAAELGLEAWKKVSPETIKSCWRNCDILPPAVHADLDQDVGKNIRNKKKSLE 231
            MDCAVC+TRLAT R       PHILDAAELGLEAWK+VS ETIK CWR CDILPPAVHADLDQDVGKNI NKK++L+
Sbjct:    1 MDCAVCLTRLATTRWLAEGGQPHILDAAELGLEAWKEVSAETIKRCWRKCDILPPAVHADLDQDVGKNIPNKKENLD 77          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1144.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5K3V5_9PHAE5.010e-7976.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JB59_9PHAE3.250e-5788.29DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHY0_9PHAE5.080e-5694.34DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JRP4_9PHAE3.210e-5588.29HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JV28_9PHAE2.720e-5486.67DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KT98_9PHAE4.880e-5486.24DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K2U1_9PHAE7.030e-5472.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2E1_9PHAE7.080e-5389.72HTH CENPB-type domain-containing protein n=1 Tax=E... [more]
A0A6H5JNH8_9PHAE6.000e-4380.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWQ1_ECTSI5.690e-3477.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1144contigP-littoralis_Contig1144:44901..46086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size832
Hectar predicted targeting categoryother localisation
Exons3
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.0133028-CDS-P-littoralis_Contig1144:44900..449631680789467.0133028-CDS-P-littoralis_Contig1144:44900..44963Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 44901..44963 +
1680789467.0260148-CDS-P-littoralis_Contig1144:45006..450771680789467.0260148-CDS-P-littoralis_Contig1144:45006..45077Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 45007..45077 +
1680789467.0343997-CDS-P-littoralis_Contig1144:45388..456741680789467.0343997-CDS-P-littoralis_Contig1144:45388..45674Pylaiella littoralis U1_48CDSP-littoralis_Contig1144 45389..45674 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789467.043042-UTR-P-littoralis_Contig1144:45674..460861680789467.043042-UTR-P-littoralis_Contig1144:45674..46086Pylaiella littoralis U1_48UTRP-littoralis_Contig1144 45675..46086 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1144.6.1prot_P-littoralis_Contig1144.6.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1144 44901..45674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1144.6.1

>prot_P-littoralis_Contig1144.6.1 ID=prot_P-littoralis_Contig1144.6.1|Name=mRNA_P-littoralis_Contig1144.6.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=140bp
MDCAVCMTRLATARCTVFATDPHILDAAELGLEAWKKVSPETIKSCWRNC
DILPPAVHADLDQDVGKNIRNKKKSLEELTDLVQRLSLEAKKTTVDENLG
EALQGLGLAPGATPTRASMEAVQTWLGVGDYCRFGGRSL*
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mRNA from alignment at P-littoralis_Contig1144:44901..46086+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1144.6.1 ID=mRNA_P-littoralis_Contig1144.6.1|Name=mRNA_P-littoralis_Contig1144.6.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1186bp|location=Sequence derived from alignment at P-littoralis_Contig1144:44901..46086+ (Pylaiella littoralis U1_48)
ATGGACTGTGCGGTGTGCATGACCCGCTTGGCGACAGCGAGATGCACCGT GTTTGCCACGGATGTGTCAACTCGAACACTGCATGGGGCTCGCGGAAGGG GCGCAGCCTCACATCCTGGACGCAGCTGAGCTAGGCCTCGAGGCGTGGAA GAAAGTTTCGCCGGAGACAATCAAGAGGTGTGTTCGTGTGGTGTTCACTT CATTATTCAATAACTGCTGTATAATTTCCCCCCTCCAGACACATACCGTT ACCACGTATTGTATATTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTCTTCACATTAAATTTTGTACGTTGACGAAATTGTTA ACTGACGCCATCATCTTGCAAGTTTTGTTTGTATTGAAAAAATGATTTTT TTTCGTTCGGCTCGTTCTGTTTTTTATTTTCTCGTTGTACACGTTTCTCT CTTCTTCCCGCGTGCTTTGACTATTCATCGTTTCCAAGTTGCTGGAGGAA CTGTGACATCCTCCCTCCTGCGGTGCACGCGGACCTCGACCAGGACGTGG GGAAGAATATCCGCAACAAGAAGAAGAGTCTCGAAGAGTTGACGGACTTG GTGCAGCGTCTTTCTCTTGAGGCGAAGAAGACAACTGTCGATGAAAACCT TGGCGAGGCGCTTCAGGGTCTGGGGCTGGCACCTGGCGCAACGCCAACCC GGGCTTCCATGGAAGCCGTGCAGACATGGTTGGGTGTAGGCGATTATTGC AGATTTGGAGGACGATCTTTGTGAGAAGTCGCTTGCCCACCTGAACATAG ACCAACTGAACATAGACTCAGACGACGACGAGGCCGACTCTTCGGCGGGA GACGAGGGACAGTGTACGCAGCCCCTGGTCTCTCCTCGTCCGCCACCGTA CGCTGACGTATCTAGGCAGTTCGGAGACCTCGAAGAAATAGCAGAGAGGT GCAGCATGGCCGGGGTAGCTTACCATCTTCACAAGGCGAAGTTAGCCTGG ATGAGCGAGGCTGGGTCAAAGAAAACGAAGCAAACACGCATGGCAGACTT CATGTAAATAAAGTTGCAGAAGCTGCCCACAGGCGATGTTCATGGAAGTT TGTTTTTTGGTTTTTTAAGGGTAGGGTGTACTACTTGTACTGCTGGAGGT GCTTGAGTCACTGGTCTTGAGTGTTTTGTGTGTGTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig1144:44901..46086+

>mRNA_P-littoralis_Contig1144.6.1 ID=mRNA_P-littoralis_Contig1144.6.1|Name=mRNA_P-littoralis_Contig1144.6.1|organism=Pylaiella littoralis U1_48|type=CDS|length=420bp|location=Sequence derived from alignment at P-littoralis_Contig1144:44901..46086+ (Pylaiella littoralis U1_48)
ATGGACTGTGCGGTGTGCATGACCCGCTTGGCGACAGCGAGATGCACCGT
GTTTGCCACGGATCCTCACATCCTGGACGCAGCTGAGCTAGGCCTCGAGG
CGTGGAAGAAAGTTTCGCCGGAGACAATCAAGAGTTGCTGGAGGAACTGT
GACATCCTCCCTCCTGCGGTGCACGCGGACCTCGACCAGGACGTGGGGAA
GAATATCCGCAACAAGAAGAAGAGTCTCGAAGAGTTGACGGACTTGGTGC
AGCGTCTTTCTCTTGAGGCGAAGAAGACAACTGTCGATGAAAACCTTGGC
GAGGCGCTTCAGGGTCTGGGGCTGGCACCTGGCGCAACGCCAACCCGGGC
TTCCATGGAAGCCGTGCAGACATGGTTGGGTGTAGGCGATTATTGCAGAT
TTGGAGGACGATCTTTGTGA
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