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Homology
BLAST of mRNA_P-littoralis_Contig114.54.2 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE) HSP 1 Score: 283 bits (724), Expect = 2.850e-85 Identity = 190/292 (65.07%), Postives = 213/292 (72.95%), Query Frame = 2
Query: 407 SPAEPLARATRAAPRPRGGRAVPACTSDNPMDEVQCEGENKHLSSGSRRGSNMLGFFSTVACSSAFPRSASAAXXXXXXXXXEVVGDAGGGEMGARLDAPAAISFGAVVVAFAFLQARIRTAVRARTARRDYEVLFKGMKSKQLAGQADEEEVALVEECMSQLLREEQEARMVDIFGIPFNLVIPDGGAGGEQGTGAREAQQGRT------GAGSTSAGKAGSD----GIREVMRAKTESDLRDGKAREEEMSPGATLKVAALWLVLISQLWLLLVLWNDPMGPATSAFLKD 1252
+P PL R G R+ S P E + EG N+ + S +R G + F ACS AFP + XXXXXXX +VG+AGG EMGAR+D A SF AVVVAFAFLQ+RIRTAVRARTARR+YEVLFKGMK+KQLAGQADE+EV LVEE MSQLL+EEQEAR VDIFGIPFNLVIPDGGAGGE GT AREAQQGR+ G G +AG+ G GIRE M+AK ESDLR KAREEEMS GATLKVAALWLVLISQLWLL+VLWNDPMGPA+S FL+D
Sbjct: 70 TPMRPLTRGRATFASRAGERSSATRMSSAPSGEGRREG-NRVVGSIARGGDVVA--FVAAACS-AFPSCSX----XXXXXXXXIVGEAGGSEMGARVDPAATASFAAVVVAFAFLQSRIRTAVRARTARRNYEVLFKGMKAKQLAGQADEKEVKLVEERMSQLLQEEQEARKVDIFGIPFNLVIPDGGAGGEPGTAAREAQQGRSSGRGELGDGGRAAGEGGQQQQQLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 353
BLAST of mRNA_P-littoralis_Contig114.54.2 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI) HSP 1 Score: 114 bits (285), Expect = 4.070e-26 Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 2
Query: 1061 GIREVMRAKTESDLRDGKAREEEMSPGATLKVAALWLVLISQLWLLLVLWNDPMGPATSAFLKD 1252
GIRE M+AK ESDLRD KAREEEMSPGATLKVAALWLVLISQLWLL+VLWNDPMGPA+S FL+D
Sbjct: 71 GIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 134
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 1 |
| Model size | 2272 |
| Hectar predicted targeting category | signal peptide |
| Exons | 5 |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-28_002390.1 |
| Cds size | 1101 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789464.6477492-UTR-P-littoralis_Contig114:364337..364491 | 1680789464.6477492-UTR-P-littoralis_Contig114:364337..364491 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig114 364338..364491 + |
| 1680789464.738799-UTR-P-littoralis_Contig114:369368..370385 | 1680789464.738799-UTR-P-littoralis_Contig114:369368..370385 | Pylaiella littoralis U1_48 | UTR | P-littoralis_Contig114 369369..370385 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789464.6638167-CDS-P-littoralis_Contig114:364491..365091 | 1680789464.6638167-CDS-P-littoralis_Contig114:364491..365091 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig114 364492..365091 + |
| 1680789464.6792881-CDS-P-littoralis_Contig114:365786..365879 | 1680789464.6792881-CDS-P-littoralis_Contig114:365786..365879 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig114 365787..365879 + |
| 1680789464.6924112-CDS-P-littoralis_Contig114:366842..366887 | 1680789464.6924112-CDS-P-littoralis_Contig114:366842..366887 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig114 366843..366887 + |
| 1680789464.7138007-CDS-P-littoralis_Contig114:367476..367596 | 1680789464.7138007-CDS-P-littoralis_Contig114:367476..367596 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig114 367477..367596 + |
| 1680789464.727439-CDS-P-littoralis_Contig114:369125..369368 | 1680789464.727439-CDS-P-littoralis_Contig114:369125..369368 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig114 369126..369368 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig114.54.2 >prot_P-littoralis_Contig114.54.2 ID=prot_P-littoralis_Contig114.54.2|Name=mRNA_P-littoralis_Contig114.54.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=367bp
MTMTMTMTMLSTRWVWLLMMCWSATADTLPPKTTPTTTLTHSPASPAFLA PTSFNHHHCHHQQQQQQQHHHQLLGSKPILIRDRSPAEPLARATRAAPRP RGGRAVPACTSDNPMDEVQCEGENKHLSSGSRRGSNMLGFFSTVACSSAF PRSASAAVAAAAAAAAEVVGDAGGGEMGARLDAPAAISFGAVVVAFAFLQ ARIRTAVRARTARRDYEVLFKGMKSKQLAGQADEEEVALVEECMSQLLRE EQEARMVDIFGIPFNLVIPDGGAGGEQGTGAREAQQGRTGAGSTSAGKAG SDGIREVMRAKTESDLRDGKAREEEMSPGATLKVAALWLVLISQLWLLLV LWNDPMGPATSAFLKD* back to topmRNA from alignment at P-littoralis_Contig114:364338..370385+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig114.54.2 ID=mRNA_P-littoralis_Contig114.54.2|Name=mRNA_P-littoralis_Contig114.54.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6048bp|location=Sequence derived from alignment at P-littoralis_Contig114:364338..370385+ (Pylaiella littoralis U1_48) CTTCTGTGGATCCTGCCCGCAATAAATCCGATAGTCGCGCTCTATCATCG
ACAGCGCATCGCACGGGGTTCTGGTGGTTGCTGTTTGTTTTTCGTTTTTT
TCGAAGCAGGAAGGAACCAGATCAAATTCAGTAGAGTCAGGACGTTGACG
TATCATGACCATGACCATGACCATGACCATGCTGTCAACAAGATGGGTTT
GGTTGCTGATGATGTGCTGGAGCGCAACAGCAGATACCCTCCCCCCAAAG
ACCACGCCCACAACCACCCTCACGCACTCGCCTGCATCGCCGGCCTTCTT
GGCGCCGACAAGCTTCAACCACCACCATTGTCATCATCAGCAGCAGCAAC
AGCAGCAGCACCATCATCAACTCCTGGGCAGTAAGCCAATCCTCATTCGG
GACAGATCTCCCGCTGAGCCTCTGGCTCGAGCAACAAGGGCAGCACCACG
GCCGCGGGGAGGACGTGCAGTACCGGCTTGTACGAGCGACAATCCCATGG
ACGAAGTACAGTGCGAGGGGGAGAATAAACACTTGAGCAGCGGCAGCCGA
AGAGGCAGCAACATGCTCGGCTTCTTTTCGACGGTGGCGTGCTCCTCGGC
TTTTCCACGCTCCGCCTCGGCAGCAGTAGCGGCGGCGGCAGCAGCGGCAG
CGGAGGTAGTAGGCGACGCGGGGGGGGGGGAGATGGGGGCACGCCTGGAC
GCGCCTGCAGCGATCTCGTTCGGCGCAGTTGTGGTGGCCTTCGCATTTTT
GCAGGTAGGTATGGAGCGTGGACATGTGTGTGGTGCACACACACACACAC
ACACACACACACACACACACACACACACCTTGTGGTATGTTACAGCGTGG
TATGGTTCGGGTCTAGTCCCACCGCAAGTACGCAGAGGTGTGATGATCTT
CTGTCCATCGCCCGCCTTCTCCGTTTCTGGCGCCAGTGTTCGATACCCTG
CGCGTCTAGTTCTGTGGAAGCCCACGTTGCACAGCAGTTGTGAATGCTTC
CCCCGCACCGCAATGTTCATCTTTCACGTTTGTTCGCCGTTACTCTGGGT
GTGTAGGCTGTTCGCCATGCCGCTGCACGAATGGGTAATAACATGTATTG
AGAAGACCGCATTCAGACCAGTGTTACGCCTGCGTTTTTATCCGAAAGAG
GTTTCAAGTTCACAAGCATTTCACAAGCAATCTGTTGACAAAGTCCACGG
AAATGATAGGGTCCAACAACTGAGGAATAACACTTCGCTTTGAGAGCTAG
TATGGCGACGAGATATGATACGGGAAAAAGGAGCAATTCTACCGCTGTTC
AGGGCATTCAGCTATTCCGGCGCATATGATATCGTGCACATTACCATATG
TAGACGTAGATGGTTCTTTCAGGTAGTCAAGCACTTTCTTTCTCGTGCTG
CACTTGGCCTTCGCGGGCGATCCTGTTGTTGCTCCTGCTGTGCGCACAGG
CTCGAATCCGAACTGCCGTCAGAGCGCGGACAGCCCGAAGAGACTACGAG
GTGTTGTTCAAGGGAATGAAATCGAAGCAGCTGGCTGGACAGGTGCGTGC
GCGCCGCATCTTCAGATCGAGAGAGAGGAATGAAGCGAACAGATGCTGAC
GTGATCGATGATGCGATTGATCGTTTAGTCCGTTTTATGATTTGTAGGCT
GATTTTGCTTCTCGACATTGAACTGTCCGGGAAGGTGTGCGTGTGTGTAC
GCGCGCGCGCTCGTGCGCGCAAATGTTTTAACACTCTCGCCTTATCGAAT
GACCTACGTGCGGGAAGGCGTTTCCGACAGACAGCGGGGGCAGGGAGAAA
GAGAGAGCGAAACGCACACCAACAGCTTGACACGTCGTCGCTGGGCCGAC
CTTTCCGTCAAATAGAAAAGTTTCACGGGCCGGGAGAGAAACGACCGTGC
CCTCACGACAAAATTATTTTTACTCATGCCTTCCTTGCCGCTCGGACCTA
TCCCCCGGCCCCGAAATATCGCTCATCTTGCCGGTTTCTTCAGGTCAATT
TATGCATGTGCGTCACATGCATGCATGTGATCTTCTCACTTTCTCCACAC
GTGTAGTACTGCTGTCTTCCCTCCTCCCAACCGTGCCTCATCTTTGTCTT
CTTCCCGCTTGACGAGGCGCTCGCTTCGTTGTGTCACACCACCGGCACCC
GGGGATCTTATCCGCCGGAAATGTCTACAGCAGTATCATAGTACTGCGGT
ATAGAGTTGCCCGCCCGAAGAGGAAACTGAAGAAATGCGTGTGAAGCCCC
CCTACCCCAACTCCAGGCGGTGACGGTTACGCAAACGAAAGGCGATGTGT
GTAAAAATCAATGATACGCACACGCGCCCTGGAGATGAGTATATCCCCCC
GGGGACGCTGCGTATCATAGTGTTGTGCTCACACCGTCTGTGATGTTGTC
GAATCATATTCTCCTAACAAAATAAAATGACGTTCGTTTTTGTTTTTCGT
TGCCCGACCGCGCTGGTTTTGCCGTTTGTATGTAAACACGATGTGCCCCT
CCTAGGCGGACGAGGAAGAGGTCGCGCTTGTGGAGGAGTGCATGTCGCAG
GTTCGATAACGGAAAAAAAAGAACGGAACAATGAAGAAAAAGGCACCGAC
GTTTTTTGTTTGCATGTAAATATCGTATGCGATGCGTGATACTTTTTTCT
GTGTACTGCTGCTGCTCAGGTAAGGTCGTCGCATGTGCATGAACCGCGTG
TCACACAGGGTTCGAATCAACGAAATGAGGGATACTGCACGGATGACACA
ACTCCTAGATGTATTTATGGTTACATACGATCGCGTGCGTAAGGAGGGAT
TTTGAAAGCGCCCGACCTCGACCCCCACAGGCAAGACCATGGCTAAGTTC
GTCACCTTGGGGTCGTTTGCACGTATCATGGGTTTGAGTCTACTGTTTTT
TTTTTATTAGACGCACTGGTATCCTGAAAATCCGCGATCAGTGATGTACA
GATACTGTTGTTCATCCAACTTCAAGGATAGCTAGCCAGCCAGCCAGCCA
GCCAGCCAGCCAGCCTTAACATCAAAACTATGCACGTCTCTGTGTACACC
CCATCACCCTCTTGCAGTCTTGTGTGCATGTCTCTCTACCAACCCCCCGC
CCCATCCCTCAACGGTCTCCGTGCGTTTCGTTCGTTCAGCTCCTCCGGGA
GGAACAAGAGGCGAGGATGGTGGACATCTTTGGCATCCCTTTTAACCTGG
TTATTCCTGACGGTGGCGCAGGGGGGGAACAGGGAACTGGGGCCCGGGAA
GCCCAGCAGGTGACAGAATGAATTTCATTTCTGCGGCACAAGAAAAATGA
AAAATCATGCTGAAGTAGAAGAAAGCCTTTCGTTGGAACAAATAGTTTTA
AGCAGCAGGTGTTTTGATACTGATACAAGTGTGCCCCTGTAATTTTGCAT
CTGGCTCGCCTTTATTGGGGTTCGGGGATCTTTAAAAAATTGGTTATTAG
GTTTGTTGTGATATCGTGGAGTTGCTTGAAAGTACTTTGAAAATGTTGGA
TATTTGACTGCGCTGCGGGAATTGCCAAGGGAAGTATCTGGCTTCGTTTT
ACTCTCGTACGGGGGATGAAAATGAAATCGCTCGAAGACAAAAACGGCGG
AAACTACAACTTACCTCAGTAAATGTTTTTAGAGGTTAGCGCACGTTTTG
TTAGGTGGGCACGTTTTGTTTTTAGAAGGGTTACCCACACCACTGTACAG
AGTGCCGTAGTTCTTGCGGGGGAAAGCGGGGAGAGTTTTGGTGTGAAACC
GTACTCGCATCGCTGTACGGGAGGTCTAAGAGCTAGTGGGGACGGTTCTG
GTGTGAAACTGCCCTGTTTTTTTCCCTTCCGGGGGCCTCTCCCCCAGCCC
CAACTGTTGTTCCGCACATCGTGTTCAACTTCCTCCCTCAGTCAGGCAGC
CGAAAAAATCTCTGCTTTCGCAGATCGATCGCACGTATTTTTTTCTTCTT
TTTTCTCTTTTCCGTCTGGATTTTTACCGCCGTGTTGGTGCCATCATGCA
TGCGAGGAATGCGACCCGGCGAGCCCAAGGAGAGGGGGGGCGTAGTGCGC
TCAATTGCCGCTTGCTTCCCTTGGTCGTCTGATTGTTGACCACGCATCCC
TCTCGGGACGGAGCTTTTCGAGTTTTCACTCACCCAGCACACATTTCTCC
CACAAAGAGTAACGAGGAGGTGGAGGGGGGAGTCACCGCGGTGCGACTTC
TCGCAGAGGAGGGAGGCGCGTCCGCATGTCTGTCGGCACAGGCGGACGAG
ACATTCCTGCCGGCAACGCGTCTTGACGGCGACAGCATCCACCTAAAACC
TTCCCGAGGCACAGCAACCAAAAGAGACAAGCCTGCCGGCGCTTCGGGGA
AGATTTGAATGTTGTGCTCCATGTGGAAGGCATGCTACTAGACGAGCCCG
CATGTTTTCAGCCCTCCTACTACTGTAGATTCAGCCTCAAGGCACGGGGC
GCCCGACCCCGAACCCTAGCCCTAACTTTGAGGGGGGATGGGAGATGTAC
GGGCTCCGGGGCAGGGTAGCGGTGGTGGAACCGGTCGGCAGCGAGAGCCG
TGCTCCTTGCGTGCGACACCTTCGCCTTCCTCCTCCGGCGAAACTTCTTC
CTGTGCTTCGCATCACGAAGTATGGAATATTTTATGTATGAAACCACAGG
AAACAAAACTGTGGGCACTTTTGTTATACAAAACCACCTTCCCTCCTTCC
TTACATCATTTAAAAAATACTCCGGTACATAATTCCGGCTTCGTCGTCTG
AATTATCACATACTTACCATATTTAATCTAAAATTCAGGGTAGAACCGGT
GCCGGTTCGACGAGTGCTGGCAAGGCGGGGAGCGACGGGATCCGTGAGGT
CATGAGGGCAAAAACCGAATCAGACTTGCGGGATGGAAAGGCAAGAGAGG
AGGAGATGTCGCCGGGAGCCACACTCAAGGTGGCCGCGCTCTGGCTGGTG
CTGATCAGCCAGCTGTGGCTGCTGCTGGTGCTCTGGAATGACCCCATGGG
CCCGGCGACGTCGGCATTCTTAAAAGACTGAGAGATTTAGAGGGAGTCGT
TTGTTTTCATGGGCTTTACAACGAGCACTGCACGTATGTCGGTGTGTTTT
GTGAAATGCCAACTTTGAGTTAGAGGCGGTTCGCTCGCCTTTTTAATGGA
TGGGGCGCGTAAGAAAATCGACACCGAGGAGCAGGCGTTGTTTTCTGTGA
TTTTTTTTGTTTTAGGTCGTGTTTAGTGTGTTTCGTTGTTTGCTGTTCCG
AGGGAGAGAGAGAGGGGCGGGGGGGGGAGGGAGAACGAGACTAGTTATTG
TTGAATGATTTTGTGATCATATTTATATGAACACGAACCGAACGGCACGG
CAAGCCGTCGTCTCGTCTTCTTCCTCTCTCTCTTCTTTTTTCTGCTACCC
AGGCGGGCGGGGGTCATCTCAGTCGGCGCATAAGCCGCCGTCATGGAGGA
AGGTGCCGGCGGGCACCATCTAGCATCATCACTTGGAAACGACCACCTAC
ATCTGACCGTTTTTGTTTTTCACGTGAAAATGGGCCATGTGATCACCGGA
CGGTGCGTTGCGATGTCGTACAAATCATAAGTCGCCGTATTCTTCTCTGT
AGCTGATTGACTCTCCGCATGTGGAGGCCTTCCTTCTACTTTTTTGATAT
ATCTTCTCTTCTTCTCTCTCCAGTCAAGATCAATTAAATCAGCACACAGG
GTTGATGTTGATGAGGTCTTGGGTGCTTTGTTTTGGCGAGGTAGTGAGGG
GTGGAGGGGTGGATGTCCGTGTGAGGGGTTTCCATGGCAAGAAACGGCGA
TTCGATCGGGTTCCCTCCCGCAGTTTGCAGCGTACTTTATCGAGATGAAG
TCGCCAGGAGGTTCCACGGCCTCAAGATGTAGTGTAAAGACAGTCGTGGG
TTCGACCCCCAGGGTGTCAACTTCTTTTTCAGAAAAAACAAATGTGCGTG
AAAATAGAAAAACCCTCGCAAGACGGCAGGCCCTGCTTACAAAACCTTGT
TTGTAAAAACATTTGGGTCCTAAAAAAGAGTCGGCCCTCATCACCTTC back to topCoding sequence (CDS) from alignment at P-littoralis_Contig114:364338..370385+ >mRNA_P-littoralis_Contig114.54.2 ID=mRNA_P-littoralis_Contig114.54.2|Name=mRNA_P-littoralis_Contig114.54.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1101bp|location=Sequence derived from alignment at P-littoralis_Contig114:364338..370385+ (Pylaiella littoralis U1_48) ATGACCATGACCATGACCATGACCATGCTGTCAACAAGATGGGTTTGGTT GCTGATGATGTGCTGGAGCGCAACAGCAGATACCCTCCCCCCAAAGACCA CGCCCACAACCACCCTCACGCACTCGCCTGCATCGCCGGCCTTCTTGGCG CCGACAAGCTTCAACCACCACCATTGTCATCATCAGCAGCAGCAACAGCA GCAGCACCATCATCAACTCCTGGGCAGTAAGCCAATCCTCATTCGGGACA GATCTCCCGCTGAGCCTCTGGCTCGAGCAACAAGGGCAGCACCACGGCCG CGGGGAGGACGTGCAGTACCGGCTTGTACGAGCGACAATCCCATGGACGA AGTACAGTGCGAGGGGGAGAATAAACACTTGAGCAGCGGCAGCCGAAGAG GCAGCAACATGCTCGGCTTCTTTTCGACGGTGGCGTGCTCCTCGGCTTTT CCACGCTCCGCCTCGGCAGCAGTAGCGGCGGCGGCAGCAGCGGCAGCGGA GGTAGTAGGCGACGCGGGGGGGGGGGAGATGGGGGCACGCCTGGACGCGC CTGCAGCGATCTCGTTCGGCGCAGTTGTGGTGGCCTTCGCATTTTTGCAG GCTCGAATCCGAACTGCCGTCAGAGCGCGGACAGCCCGAAGAGACTACGA GGTGTTGTTCAAGGGAATGAAATCGAAGCAGCTGGCTGGACAGGCGGACG AGGAAGAGGTCGCGCTTGTGGAGGAGTGCATGTCGCAGCTCCTCCGGGAG GAACAAGAGGCGAGGATGGTGGACATCTTTGGCATCCCTTTTAACCTGGT TATTCCTGACGGTGGCGCAGGGGGGGAACAGGGAACTGGGGCCCGGGAAG CCCAGCAGGGTAGAACCGGTGCCGGTTCGACGAGTGCTGGCAAGGCGGGG AGCGACGGGATCCGTGAGGTCATGAGGGCAAAAACCGAATCAGACTTGCG GGATGGAAAGGCAAGAGAGGAGGAGATGTCGCCGGGAGCCACACTCAAGG TGGCCGCGCTCTGGCTGGTGCTGATCAGCCAGCTGTGGCTGCTGCTGGTG CTCTGGAATGACCCCATGGGCCCGGCGACGTCGGCATTCTTAAAAGACTG A back to top
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