mRNA_P-littoralis_Contig114.54.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig114.54.2
Unique NamemRNA_P-littoralis_Contig114.54.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig114.54.2 vs. uniprot
Match: A0A6H5L6Y5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y5_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 2.850e-85
Identity = 190/292 (65.07%), Postives = 213/292 (72.95%), Query Frame = 2
Query:  407 SPAEPLARATRAAPRPRGGRAVPACTSDNPMDEVQCEGENKHLSSGSRRGSNMLGFFSTVACSSAFPRSASAAXXXXXXXXXEVVGDAGGGEMGARLDAPAAISFGAVVVAFAFLQARIRTAVRARTARRDYEVLFKGMKSKQLAGQADEEEVALVEECMSQLLREEQEARMVDIFGIPFNLVIPDGGAGGEQGTGAREAQQGRT------GAGSTSAGKAGSD----GIREVMRAKTESDLRDGKAREEEMSPGATLKVAALWLVLISQLWLLLVLWNDPMGPATSAFLKD 1252
            +P  PL R         G R+     S  P  E + EG N+ + S +R G  +   F   ACS AFP  +     XXXXXXX +VG+AGG EMGAR+D  A  SF AVVVAFAFLQ+RIRTAVRARTARR+YEVLFKGMK+KQLAGQADE+EV LVEE MSQLL+EEQEAR VDIFGIPFNLVIPDGGAGGE GT AREAQQGR+      G G  +AG+ G      GIRE M+AK ESDLR  KAREEEMS GATLKVAALWLVLISQLWLL+VLWNDPMGPA+S FL+D
Sbjct:   70 TPMRPLTRGRATFASRAGERSSATRMSSAPSGEGRREG-NRVVGSIARGGDVVA--FVAAACS-AFPSCSX----XXXXXXXXIVGEAGGSEMGARVDPAATASFAAVVVAFAFLQSRIRTAVRARTARRNYEVLFKGMKAKQLAGQADEKEVKLVEERMSQLLQEEQEARKVDIFGIPFNLVIPDGGAGGEPGTAAREAQQGRSSGRGELGDGGRAAGEGGQQQQQLGIRETMKAKAESDLRGRKAREEEMSTGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 353          
BLAST of mRNA_P-littoralis_Contig114.54.2 vs. uniprot
Match: D7FXN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXN2_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 4.070e-26
Identity = 56/64 (87.50%), Postives = 60/64 (93.75%), Query Frame = 2
Query: 1061 GIREVMRAKTESDLRDGKAREEEMSPGATLKVAALWLVLISQLWLLLVLWNDPMGPATSAFLKD 1252
            GIRE M+AK ESDLRD KAREEEMSPGATLKVAALWLVLISQLWLL+VLWNDPMGPA+S FL+D
Sbjct:   71 GIRESMKAKAESDLRDRKAREEEMSPGATLKVAALWLVLISQLWLLVVLWNDPMGPASSTFLQD 134          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig114.54.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6Y5_9PHAE2.850e-8565.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXN2_ECTSI4.070e-2687.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig114contigP-littoralis_Contig114:364338..370385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2272
Hectar predicted targeting categorysignal peptide
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-28_002390.1
Cds size1101
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig114.54.2prot_P-littoralis_Contig114.54.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig114 364492..369368 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789464.6477492-UTR-P-littoralis_Contig114:364337..3644911680789464.6477492-UTR-P-littoralis_Contig114:364337..364491Pylaiella littoralis U1_48UTRP-littoralis_Contig114 364338..364491 +
1680789464.738799-UTR-P-littoralis_Contig114:369368..3703851680789464.738799-UTR-P-littoralis_Contig114:369368..370385Pylaiella littoralis U1_48UTRP-littoralis_Contig114 369369..370385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789464.6638167-CDS-P-littoralis_Contig114:364491..3650911680789464.6638167-CDS-P-littoralis_Contig114:364491..365091Pylaiella littoralis U1_48CDSP-littoralis_Contig114 364492..365091 +
1680789464.6792881-CDS-P-littoralis_Contig114:365786..3658791680789464.6792881-CDS-P-littoralis_Contig114:365786..365879Pylaiella littoralis U1_48CDSP-littoralis_Contig114 365787..365879 +
1680789464.6924112-CDS-P-littoralis_Contig114:366842..3668871680789464.6924112-CDS-P-littoralis_Contig114:366842..366887Pylaiella littoralis U1_48CDSP-littoralis_Contig114 366843..366887 +
1680789464.7138007-CDS-P-littoralis_Contig114:367476..3675961680789464.7138007-CDS-P-littoralis_Contig114:367476..367596Pylaiella littoralis U1_48CDSP-littoralis_Contig114 367477..367596 +
1680789464.727439-CDS-P-littoralis_Contig114:369125..3693681680789464.727439-CDS-P-littoralis_Contig114:369125..369368Pylaiella littoralis U1_48CDSP-littoralis_Contig114 369126..369368 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig114.54.2

>prot_P-littoralis_Contig114.54.2 ID=prot_P-littoralis_Contig114.54.2|Name=mRNA_P-littoralis_Contig114.54.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=367bp
MTMTMTMTMLSTRWVWLLMMCWSATADTLPPKTTPTTTLTHSPASPAFLA
PTSFNHHHCHHQQQQQQQHHHQLLGSKPILIRDRSPAEPLARATRAAPRP
RGGRAVPACTSDNPMDEVQCEGENKHLSSGSRRGSNMLGFFSTVACSSAF
PRSASAAVAAAAAAAAEVVGDAGGGEMGARLDAPAAISFGAVVVAFAFLQ
ARIRTAVRARTARRDYEVLFKGMKSKQLAGQADEEEVALVEECMSQLLRE
EQEARMVDIFGIPFNLVIPDGGAGGEQGTGAREAQQGRTGAGSTSAGKAG
SDGIREVMRAKTESDLRDGKAREEEMSPGATLKVAALWLVLISQLWLLLV
LWNDPMGPATSAFLKD*
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mRNA from alignment at P-littoralis_Contig114:364338..370385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig114.54.2 ID=mRNA_P-littoralis_Contig114.54.2|Name=mRNA_P-littoralis_Contig114.54.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6048bp|location=Sequence derived from alignment at P-littoralis_Contig114:364338..370385+ (Pylaiella littoralis U1_48)
CTTCTGTGGATCCTGCCCGCAATAAATCCGATAGTCGCGCTCTATCATCG ACAGCGCATCGCACGGGGTTCTGGTGGTTGCTGTTTGTTTTTCGTTTTTT TCGAAGCAGGAAGGAACCAGATCAAATTCAGTAGAGTCAGGACGTTGACG TATCATGACCATGACCATGACCATGACCATGCTGTCAACAAGATGGGTTT GGTTGCTGATGATGTGCTGGAGCGCAACAGCAGATACCCTCCCCCCAAAG ACCACGCCCACAACCACCCTCACGCACTCGCCTGCATCGCCGGCCTTCTT GGCGCCGACAAGCTTCAACCACCACCATTGTCATCATCAGCAGCAGCAAC AGCAGCAGCACCATCATCAACTCCTGGGCAGTAAGCCAATCCTCATTCGG GACAGATCTCCCGCTGAGCCTCTGGCTCGAGCAACAAGGGCAGCACCACG GCCGCGGGGAGGACGTGCAGTACCGGCTTGTACGAGCGACAATCCCATGG ACGAAGTACAGTGCGAGGGGGAGAATAAACACTTGAGCAGCGGCAGCCGA AGAGGCAGCAACATGCTCGGCTTCTTTTCGACGGTGGCGTGCTCCTCGGC TTTTCCACGCTCCGCCTCGGCAGCAGTAGCGGCGGCGGCAGCAGCGGCAG CGGAGGTAGTAGGCGACGCGGGGGGGGGGGAGATGGGGGCACGCCTGGAC GCGCCTGCAGCGATCTCGTTCGGCGCAGTTGTGGTGGCCTTCGCATTTTT GCAGGTAGGTATGGAGCGTGGACATGTGTGTGGTGCACACACACACACAC ACACACACACACACACACACACACACACCTTGTGGTATGTTACAGCGTGG TATGGTTCGGGTCTAGTCCCACCGCAAGTACGCAGAGGTGTGATGATCTT CTGTCCATCGCCCGCCTTCTCCGTTTCTGGCGCCAGTGTTCGATACCCTG CGCGTCTAGTTCTGTGGAAGCCCACGTTGCACAGCAGTTGTGAATGCTTC CCCCGCACCGCAATGTTCATCTTTCACGTTTGTTCGCCGTTACTCTGGGT GTGTAGGCTGTTCGCCATGCCGCTGCACGAATGGGTAATAACATGTATTG AGAAGACCGCATTCAGACCAGTGTTACGCCTGCGTTTTTATCCGAAAGAG GTTTCAAGTTCACAAGCATTTCACAAGCAATCTGTTGACAAAGTCCACGG AAATGATAGGGTCCAACAACTGAGGAATAACACTTCGCTTTGAGAGCTAG TATGGCGACGAGATATGATACGGGAAAAAGGAGCAATTCTACCGCTGTTC AGGGCATTCAGCTATTCCGGCGCATATGATATCGTGCACATTACCATATG TAGACGTAGATGGTTCTTTCAGGTAGTCAAGCACTTTCTTTCTCGTGCTG CACTTGGCCTTCGCGGGCGATCCTGTTGTTGCTCCTGCTGTGCGCACAGG CTCGAATCCGAACTGCCGTCAGAGCGCGGACAGCCCGAAGAGACTACGAG GTGTTGTTCAAGGGAATGAAATCGAAGCAGCTGGCTGGACAGGTGCGTGC GCGCCGCATCTTCAGATCGAGAGAGAGGAATGAAGCGAACAGATGCTGAC GTGATCGATGATGCGATTGATCGTTTAGTCCGTTTTATGATTTGTAGGCT GATTTTGCTTCTCGACATTGAACTGTCCGGGAAGGTGTGCGTGTGTGTAC GCGCGCGCGCTCGTGCGCGCAAATGTTTTAACACTCTCGCCTTATCGAAT GACCTACGTGCGGGAAGGCGTTTCCGACAGACAGCGGGGGCAGGGAGAAA GAGAGAGCGAAACGCACACCAACAGCTTGACACGTCGTCGCTGGGCCGAC CTTTCCGTCAAATAGAAAAGTTTCACGGGCCGGGAGAGAAACGACCGTGC CCTCACGACAAAATTATTTTTACTCATGCCTTCCTTGCCGCTCGGACCTA TCCCCCGGCCCCGAAATATCGCTCATCTTGCCGGTTTCTTCAGGTCAATT TATGCATGTGCGTCACATGCATGCATGTGATCTTCTCACTTTCTCCACAC GTGTAGTACTGCTGTCTTCCCTCCTCCCAACCGTGCCTCATCTTTGTCTT CTTCCCGCTTGACGAGGCGCTCGCTTCGTTGTGTCACACCACCGGCACCC GGGGATCTTATCCGCCGGAAATGTCTACAGCAGTATCATAGTACTGCGGT ATAGAGTTGCCCGCCCGAAGAGGAAACTGAAGAAATGCGTGTGAAGCCCC CCTACCCCAACTCCAGGCGGTGACGGTTACGCAAACGAAAGGCGATGTGT GTAAAAATCAATGATACGCACACGCGCCCTGGAGATGAGTATATCCCCCC GGGGACGCTGCGTATCATAGTGTTGTGCTCACACCGTCTGTGATGTTGTC GAATCATATTCTCCTAACAAAATAAAATGACGTTCGTTTTTGTTTTTCGT TGCCCGACCGCGCTGGTTTTGCCGTTTGTATGTAAACACGATGTGCCCCT CCTAGGCGGACGAGGAAGAGGTCGCGCTTGTGGAGGAGTGCATGTCGCAG GTTCGATAACGGAAAAAAAAGAACGGAACAATGAAGAAAAAGGCACCGAC GTTTTTTGTTTGCATGTAAATATCGTATGCGATGCGTGATACTTTTTTCT GTGTACTGCTGCTGCTCAGGTAAGGTCGTCGCATGTGCATGAACCGCGTG TCACACAGGGTTCGAATCAACGAAATGAGGGATACTGCACGGATGACACA ACTCCTAGATGTATTTATGGTTACATACGATCGCGTGCGTAAGGAGGGAT TTTGAAAGCGCCCGACCTCGACCCCCACAGGCAAGACCATGGCTAAGTTC GTCACCTTGGGGTCGTTTGCACGTATCATGGGTTTGAGTCTACTGTTTTT TTTTTATTAGACGCACTGGTATCCTGAAAATCCGCGATCAGTGATGTACA GATACTGTTGTTCATCCAACTTCAAGGATAGCTAGCCAGCCAGCCAGCCA GCCAGCCAGCCAGCCTTAACATCAAAACTATGCACGTCTCTGTGTACACC CCATCACCCTCTTGCAGTCTTGTGTGCATGTCTCTCTACCAACCCCCCGC CCCATCCCTCAACGGTCTCCGTGCGTTTCGTTCGTTCAGCTCCTCCGGGA GGAACAAGAGGCGAGGATGGTGGACATCTTTGGCATCCCTTTTAACCTGG TTATTCCTGACGGTGGCGCAGGGGGGGAACAGGGAACTGGGGCCCGGGAA GCCCAGCAGGTGACAGAATGAATTTCATTTCTGCGGCACAAGAAAAATGA AAAATCATGCTGAAGTAGAAGAAAGCCTTTCGTTGGAACAAATAGTTTTA AGCAGCAGGTGTTTTGATACTGATACAAGTGTGCCCCTGTAATTTTGCAT CTGGCTCGCCTTTATTGGGGTTCGGGGATCTTTAAAAAATTGGTTATTAG GTTTGTTGTGATATCGTGGAGTTGCTTGAAAGTACTTTGAAAATGTTGGA TATTTGACTGCGCTGCGGGAATTGCCAAGGGAAGTATCTGGCTTCGTTTT ACTCTCGTACGGGGGATGAAAATGAAATCGCTCGAAGACAAAAACGGCGG AAACTACAACTTACCTCAGTAAATGTTTTTAGAGGTTAGCGCACGTTTTG TTAGGTGGGCACGTTTTGTTTTTAGAAGGGTTACCCACACCACTGTACAG AGTGCCGTAGTTCTTGCGGGGGAAAGCGGGGAGAGTTTTGGTGTGAAACC GTACTCGCATCGCTGTACGGGAGGTCTAAGAGCTAGTGGGGACGGTTCTG GTGTGAAACTGCCCTGTTTTTTTCCCTTCCGGGGGCCTCTCCCCCAGCCC CAACTGTTGTTCCGCACATCGTGTTCAACTTCCTCCCTCAGTCAGGCAGC CGAAAAAATCTCTGCTTTCGCAGATCGATCGCACGTATTTTTTTCTTCTT TTTTCTCTTTTCCGTCTGGATTTTTACCGCCGTGTTGGTGCCATCATGCA TGCGAGGAATGCGACCCGGCGAGCCCAAGGAGAGGGGGGGCGTAGTGCGC TCAATTGCCGCTTGCTTCCCTTGGTCGTCTGATTGTTGACCACGCATCCC TCTCGGGACGGAGCTTTTCGAGTTTTCACTCACCCAGCACACATTTCTCC CACAAAGAGTAACGAGGAGGTGGAGGGGGGAGTCACCGCGGTGCGACTTC TCGCAGAGGAGGGAGGCGCGTCCGCATGTCTGTCGGCACAGGCGGACGAG ACATTCCTGCCGGCAACGCGTCTTGACGGCGACAGCATCCACCTAAAACC TTCCCGAGGCACAGCAACCAAAAGAGACAAGCCTGCCGGCGCTTCGGGGA AGATTTGAATGTTGTGCTCCATGTGGAAGGCATGCTACTAGACGAGCCCG CATGTTTTCAGCCCTCCTACTACTGTAGATTCAGCCTCAAGGCACGGGGC GCCCGACCCCGAACCCTAGCCCTAACTTTGAGGGGGGATGGGAGATGTAC GGGCTCCGGGGCAGGGTAGCGGTGGTGGAACCGGTCGGCAGCGAGAGCCG TGCTCCTTGCGTGCGACACCTTCGCCTTCCTCCTCCGGCGAAACTTCTTC CTGTGCTTCGCATCACGAAGTATGGAATATTTTATGTATGAAACCACAGG AAACAAAACTGTGGGCACTTTTGTTATACAAAACCACCTTCCCTCCTTCC TTACATCATTTAAAAAATACTCCGGTACATAATTCCGGCTTCGTCGTCTG AATTATCACATACTTACCATATTTAATCTAAAATTCAGGGTAGAACCGGT GCCGGTTCGACGAGTGCTGGCAAGGCGGGGAGCGACGGGATCCGTGAGGT CATGAGGGCAAAAACCGAATCAGACTTGCGGGATGGAAAGGCAAGAGAGG AGGAGATGTCGCCGGGAGCCACACTCAAGGTGGCCGCGCTCTGGCTGGTG CTGATCAGCCAGCTGTGGCTGCTGCTGGTGCTCTGGAATGACCCCATGGG CCCGGCGACGTCGGCATTCTTAAAAGACTGAGAGATTTAGAGGGAGTCGT TTGTTTTCATGGGCTTTACAACGAGCACTGCACGTATGTCGGTGTGTTTT GTGAAATGCCAACTTTGAGTTAGAGGCGGTTCGCTCGCCTTTTTAATGGA TGGGGCGCGTAAGAAAATCGACACCGAGGAGCAGGCGTTGTTTTCTGTGA TTTTTTTTGTTTTAGGTCGTGTTTAGTGTGTTTCGTTGTTTGCTGTTCCG AGGGAGAGAGAGAGGGGCGGGGGGGGGAGGGAGAACGAGACTAGTTATTG TTGAATGATTTTGTGATCATATTTATATGAACACGAACCGAACGGCACGG CAAGCCGTCGTCTCGTCTTCTTCCTCTCTCTCTTCTTTTTTCTGCTACCC AGGCGGGCGGGGGTCATCTCAGTCGGCGCATAAGCCGCCGTCATGGAGGA AGGTGCCGGCGGGCACCATCTAGCATCATCACTTGGAAACGACCACCTAC ATCTGACCGTTTTTGTTTTTCACGTGAAAATGGGCCATGTGATCACCGGA CGGTGCGTTGCGATGTCGTACAAATCATAAGTCGCCGTATTCTTCTCTGT AGCTGATTGACTCTCCGCATGTGGAGGCCTTCCTTCTACTTTTTTGATAT ATCTTCTCTTCTTCTCTCTCCAGTCAAGATCAATTAAATCAGCACACAGG GTTGATGTTGATGAGGTCTTGGGTGCTTTGTTTTGGCGAGGTAGTGAGGG GTGGAGGGGTGGATGTCCGTGTGAGGGGTTTCCATGGCAAGAAACGGCGA TTCGATCGGGTTCCCTCCCGCAGTTTGCAGCGTACTTTATCGAGATGAAG TCGCCAGGAGGTTCCACGGCCTCAAGATGTAGTGTAAAGACAGTCGTGGG TTCGACCCCCAGGGTGTCAACTTCTTTTTCAGAAAAAACAAATGTGCGTG AAAATAGAAAAACCCTCGCAAGACGGCAGGCCCTGCTTACAAAACCTTGT TTGTAAAAACATTTGGGTCCTAAAAAAGAGTCGGCCCTCATCACCTTC
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Coding sequence (CDS) from alignment at P-littoralis_Contig114:364338..370385+

>mRNA_P-littoralis_Contig114.54.2 ID=mRNA_P-littoralis_Contig114.54.2|Name=mRNA_P-littoralis_Contig114.54.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1101bp|location=Sequence derived from alignment at P-littoralis_Contig114:364338..370385+ (Pylaiella littoralis U1_48)
ATGACCATGACCATGACCATGACCATGCTGTCAACAAGATGGGTTTGGTT
GCTGATGATGTGCTGGAGCGCAACAGCAGATACCCTCCCCCCAAAGACCA
CGCCCACAACCACCCTCACGCACTCGCCTGCATCGCCGGCCTTCTTGGCG
CCGACAAGCTTCAACCACCACCATTGTCATCATCAGCAGCAGCAACAGCA
GCAGCACCATCATCAACTCCTGGGCAGTAAGCCAATCCTCATTCGGGACA
GATCTCCCGCTGAGCCTCTGGCTCGAGCAACAAGGGCAGCACCACGGCCG
CGGGGAGGACGTGCAGTACCGGCTTGTACGAGCGACAATCCCATGGACGA
AGTACAGTGCGAGGGGGAGAATAAACACTTGAGCAGCGGCAGCCGAAGAG
GCAGCAACATGCTCGGCTTCTTTTCGACGGTGGCGTGCTCCTCGGCTTTT
CCACGCTCCGCCTCGGCAGCAGTAGCGGCGGCGGCAGCAGCGGCAGCGGA
GGTAGTAGGCGACGCGGGGGGGGGGGAGATGGGGGCACGCCTGGACGCGC
CTGCAGCGATCTCGTTCGGCGCAGTTGTGGTGGCCTTCGCATTTTTGCAG
GCTCGAATCCGAACTGCCGTCAGAGCGCGGACAGCCCGAAGAGACTACGA
GGTGTTGTTCAAGGGAATGAAATCGAAGCAGCTGGCTGGACAGGCGGACG
AGGAAGAGGTCGCGCTTGTGGAGGAGTGCATGTCGCAGCTCCTCCGGGAG
GAACAAGAGGCGAGGATGGTGGACATCTTTGGCATCCCTTTTAACCTGGT
TATTCCTGACGGTGGCGCAGGGGGGGAACAGGGAACTGGGGCCCGGGAAG
CCCAGCAGGGTAGAACCGGTGCCGGTTCGACGAGTGCTGGCAAGGCGGGG
AGCGACGGGATCCGTGAGGTCATGAGGGCAAAAACCGAATCAGACTTGCG
GGATGGAAAGGCAAGAGAGGAGGAGATGTCGCCGGGAGCCACACTCAAGG
TGGCCGCGCTCTGGCTGGTGCTGATCAGCCAGCTGTGGCTGCTGCTGGTG
CTCTGGAATGACCCCATGGGCCCGGCGACGTCGGCATTCTTAAAAGACTG
A
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