prot_P-littoralis_Contig1139.1.2 (polypeptide) Pylaiella littoralis U1_48

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-littoralis_Contig1139.1.2
Unique Nameprot_P-littoralis_Contig1139.1.2
Typepolypeptide
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Sequence length133
Homology
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: D7FJZ6_ECTSI (RNA_pol_L_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJZ6_ECTSI)

HSP 1 Score: 211 bits (536), Expect = 1.390e-68
Identity = 101/106 (95.28%), Postives = 105/106 (99.06%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRDVCNILEERVQEEIPDA 106
            MAVNEHRPTVAD+KFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALE+LKEGLRDLRD+CNILEERV+ EIPDA
Sbjct:    1 MAVNEHRPTVADIKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALELLKEGLRDLRDLCNILEERVEREIPDA 106          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A835YNA2_9STRA (RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNA2_9STRA)

HSP 1 Score: 153 bits (386), Expect = 1.320e-45
Identity = 75/113 (66.37%), Postives = 92/113 (81.42%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALEVLKEGLRDLRDVCNILEERV----QEEIPDAPV 108
            M+VNEHRP  AD+KF++ EG++ +SATF+FGDEDHTLGNALRHVLMQ  E DFCGYSVPHPSEPKMNLRLQT  G PA++VLK GL+DL  +C+IL+E++    +   P APV
Sbjct:    1 MSVNEHRPKPADLKFEILEGATTTSATFVFGDEDHTLGNALRHVLMQMPETDFCGYSVPHPSEPKMNLRLQTRDGVPAIDVLKRGLQDLVTICDILDEKLDAMGEPSDPAAPV 113          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A7S4DHT9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHT9_HETAK)

HSP 1 Score: 141 bits (356), Expect = 6.180e-41
Identity = 66/95 (69.47%), Postives = 77/95 (81.05%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRDVCNIL 95
            MAVNEHR   A+ +F V EGS+  SATF+FG+EDHTLGNALRHVLMQ KE DFCGYSVPHP+EPKMN+RLQT G  AL VL+ GL DL  +C++L
Sbjct:   28 MAVNEHRTMPAEERFAVLEGSTSHSATFVFGNEDHTLGNALRHVLMQRKETDFCGYSVPHPTEPKMNVRLQTHGEDALTVLRAGLADLSGICDLL 122          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A4D9D350_9STRA (RNA_pol_L_2 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D350_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.100e-37
Identity = 64/116 (55.17%), Postives = 85/116 (73.28%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALEVLKEGLRDLRDVCNILEERVQEEIPDAPVKQEEDED 115
            M+VNEHRP  A+ KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT+  +PAL+VLK+GL ++ ++C++ +  +   I D   +Q +  D
Sbjct:    1 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYDEQQADSTD 116          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A7R9U1D2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U1D2_9STRA)

HSP 1 Score: 132 bits (332), Expect = 1.800e-37
Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSS---LSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGR--PALEVLKEGLRDLRDVCNILEE 97
            MAVNE R   ADV F+V E +    + + TF+FGDE HTLGNALRHVLM+ KE  FCGYS+PHPSEPKMN+RLQTT +  PA+++LK GL+DL DVC++++E
Sbjct:    1 MAVNEQRLATADVAFEVLEAADETDVGNRTFVFGDEGHTLGNALRHVLMRRKETHFCGYSIPHPSEPKMNMRLQTTDKEMPAIDLLKTGLQDLADVCDVVDE 102          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: W7TJI2_9STRA (Dna-directed rna polymerases i and iii subunit rpac2 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 3.240e-37
Identity = 64/116 (55.17%), Postives = 85/116 (73.28%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTG-RPALEVLKEGLRDLRDVCNILEERVQEEIPDAPVKQEEDED 115
            M+VNEHRP  A+ KF+  E +   S TF+FGDEDHTLGN+LRHVLM  KE  FCGYSVPHPSEPKMN+RLQT+  +PAL+VLK+GL ++ ++C++ +  +   I D   +Q +  D
Sbjct:   37 MSVNEHRPQPAEKKFESLEYTDEHSRTFVFGDEDHTLGNSLRHVLMGRKETRFCGYSVPHPSEPKMNIRLQTSATKPALQVLKDGLHEMVEICDLFDFTLDRAISDYEEQQADSTD 152          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A7S2UY40_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UY40_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.700e-36
Identity = 61/106 (57.55%), Postives = 79/106 (74.53%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALEVLKEGLRDLRDVCNILEERVQEEIPD 105
            MAVNEH+   AD++FQ  +GS++ S TF FGDEDHTLGNALRHVLMQ  + + CGYSVPHP+EP M++RLQT  G  A EVLK+GL DL  +C+ L ++  + + D
Sbjct:    1 MAVNEHKTLPADIRFQKLQGSTIDSCTFSFGDEDHTLGNALRHVLMQQAKTELCGYSVPHPTEPYMHVRLQTIQGSDATEVLKDGLNDLAKICDTLTDKFDKALND 106          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A7S1TTH9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TTH9_9STRA)

HSP 1 Score: 124 bits (311), Expect = 2.790e-34
Identity = 58/102 (56.86%), Postives = 77/102 (75.49%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQV---KEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGRP--ALEVLKEGLRDLRDVCNILEE 97
            M+VNEHR    +V FQ+    +     + TFIFG+EDHTLGNALRHVLMQ +E  FCGYS+PHPSEPKMNLRLQT  +   A+++LK GL+DL ++C++++E
Sbjct:    1 MSVNEHRTPQEEVDFQILNSPDDKDPGNRTFIFGNEDHTLGNALRHVLMQRRETQFCGYSIPHPSEPKMNLRLQTVNKDTDAVDLLKTGLKDLSEICDVVDE 102          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A7S0XDL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDL5_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.460e-31
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 0
Query:    1 MAVNEHR-PTVADVK-FQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTTGR-PALEVLKEGLRDLRDVCNILEERVQEEIPD 105
            M+VN+HR P  ++ + F++K G++  SATFIFG+EDHTLGN+LR+VL Q  EVDF GYSVPHP EPK+N+RLQT     A+ VLK+GL+DL +  NIL++   + I D
Sbjct:    1 MSVNDHRIPLASNTELFEIKPGNNNKSATFIFGNEDHTLGNSLRYVLSQRNEVDFVGYSVPHPYEPKLNIRLQTKENYTAVNVLKDGLKDLEETANILDDVFIQSIKD 108          
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Match: A0A7S2WKX3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKX3_9STRA)

HSP 1 Score: 113 bits (283), Expect = 4.970e-30
Identity = 60/111 (54.05%), Postives = 72/111 (64.86%), Query Frame = 0
Query:    1 MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKEVDFCGYSVPHPSEPKMNLRLQTT-GRPALEVLKEGLRDLRDVCNILEERVQEEIPDAPVKQ 110
            MAVNE     A+ + QVK G S   ATFI GD+DHTLGNALRHVLMQ +  +FCGYS+PHPSEP ++LRLQT  G  A E LK GL++L   C+ +E        D   KQ
Sbjct:    1 MAVNEVTAKTAEHRLQVKLGESEDCATFILGDQDHTLGNALRHVLMQTRGTEFCGYSIPHPSEPYVHLRLQTQDGTSAAEKLKAGLKELSVSCDHIEAAFDRAFDDFEKKQ 111          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1139.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJZ6_ECTSI1.390e-6895.28RNA_pol_L_2 domain-containing protein n=2 Tax=Ecto... [more]
A0A835YNA2_9STRA1.320e-4566.37RNA polymerase Rpb3/Rpb11 dimerization domain-cont... [more]
A0A7S4DHT9_HETAK6.180e-4169.47Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A4D9D350_9STRA1.100e-3755.17RNA_pol_L_2 domain-containing protein n=1 Tax=Nann... [more]
A0A7R9U1D2_9STRA1.800e-3761.76Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TJI2_9STRA3.240e-3755.17Dna-directed rna polymerases i and iii subunit rpa... [more]
A0A7S2UY40_9STRA2.700e-3657.55Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1TTH9_9STRA2.790e-3456.86Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0XDL5_9STRA1.460e-3155.56Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2WKX3_9STRA4.970e-3054.05Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 108..128
NoneNo IPR availableCOILSCoilCoilcoord: 78..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 107..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..132
NoneNo IPR availablePANTHERPTHR13946DNA-DIRECTED RNA POLYMERASE I,II,IIIcoord: 18..104
NoneNo IPR availablePANTHERPTHR13946:SF28DNA-DIRECTED RNA POLYMERASES I AND III SUBUNIT RPAC2coord: 18..104
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domainPFAMPF13656RNA_pol_L_2coord: 26..98
e-value: 3.5E-31
score: 106.8
IPR036603RNA polymerase, RBP11-like subunitGENE3D3.30.1360.10coord: 6..116
e-value: 3.9E-34
score: 118.5
IPR036603RNA polymerase, RBP11-like subunitSUPERFAMILY55257RBP11-like subunits of RNA polymerasecoord: 21..103
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved sitePROSITEPS01154RNA_POL_L_13KDcoord: 30..61
IPR033898DNA-directed RNA polymerases I and III subunit AC19CDDcd07029RNAP_I_III_AC19coord: 18..97
e-value: 2.37098E-44
score: 138.134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1139contigP-littoralis_Contig1139:2547..21768 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Pylaiella littoralis U1_48 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1139.1.2mRNA_P-littoralis_Contig1139.1.2Pylaiella littoralis U1_48mRNAP-littoralis_Contig1139 1886..21815 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-littoralis_Contig1139.1.2 ID=prot_P-littoralis_Contig1139.1.2|Name=mRNA_P-littoralis_Contig1139.1.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=133bp
MAVNEHRPTVADVKFQVKEGSSLSSATFIFGDEDHTLGNALRHVLMQNKE
VDFCGYSVPHPSEPKMNLRLQTTGRPALEVLKEGLRDLRDVCNILEERVQ
EEIPDAPVKQEEDEDDDEEDEDDDEEDEDEEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009025RBP11-like_dimer
IPR036603RBP11-like
IPR008193RNA_pol_Rpb11_13-16kDa_CS
IPR033898RNAP_AC19