mRNA_P-littoralis_Contig111.83.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig111.83.1
Unique NamemRNA_P-littoralis_Contig111.83.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 2.460e-121
Identity = 194/287 (67.60%), Postives = 211/287 (73.52%), Query Frame = 1
Query:    1 AEEFRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRG 720
            A  F+ K N+WY+RFRKR GFSIRRRTSVGQKLP G+EGMAWAT+MKLR AL++RAGE                  DLT EQL SV A VF+ELGNMDQTPVQHEMPVETTLEK GAKDARISTGGKEKERFTL LAVMA+G +V  RIIFKGTPFIPP  SGKGKST PRK                              W D REC  WIS SWKLRPNNGSI++QRP ILVLDDFKCH+DE +IA L++ ANTIVI+IPGGLTPLLQPLDRMLNKQMKRLLRG
Sbjct:   24 ALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRG 310          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 363 bits (931), Expect = 1.140e-120
Identity = 196/286 (68.53%), Postives = 209/286 (73.08%), Query Frame = 1
Query:    1 AEEFRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLR 717
            A  F+ KFN+WY+RFRKR GFSIRRRTSVGQKLP G EGMAWAT+MKLR AL+KRAGE                  DLTSEQL SV A VFEELGNMDQTPVQHE+PVETTLEK GAKDARISTGGKEKERFTL LAVMA+G +V  RIIFKGTPF PPT SGKGKST PRK                              W D REC  WIS SWKLRPNNGSI++QRP ILVLDDFKCH+DE FIA L++ ANTIVI IPG LTPLLQPLDRMLNKQMKRLLR
Sbjct:   24 ALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLR 309          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 2.190e-114
Identity = 192/288 (66.67%), Postives = 209/288 (72.57%), Query Frame = 1
Query:    1 AEEFRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGG-KEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRG 720
            A +F+ KFN+WY+RFRKR GFSIRRRTSVGQKLP G+EGMAWAT+MKL  AL+KRAGE                  DL SEQL SV A VFEE+GNMDQ PVQHEMPVETTL+K GAKDARISTGG  EKERFTL LAV A+G +V  RIIF+GTPFIPPT SGKGKST+PRK                              W D REC  WIS SWKLRPNNGSI++QRP ILVLDDFKCH DE FIA L++ ANTIVI IPGGLTPLLQPLDRMLNKQMKRLLRG
Sbjct:  218 AIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRG 505          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 364 bits (934), Expect = 2.670e-114
Identity = 189/284 (66.55%), Postives = 213/284 (75.00%), Query Frame = 1
Query:   10 FRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRG 720
            FR KF NWY  FR+R GFSIRRRTSVGQKLPTG+EG+A+ATLMKLR ALL+RAGE                  DLT  QLESVAA VFEELGNMDQTPVQ EMPVETTLEKRG KDARISTGGKEK+RFT CLAVMA+G +VP RIIFKG PFIPP+ +G+ K+TQ RKG                             WCDARECTLW+SESW+ RPN+GS+IKQR SILVLDDF+CHR E+F+ DL+++ NT VILIPGGLTPLLQPLDRMLNK+MKRL+RG
Sbjct:   96 FRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 349 bits (895), Expect = 8.530e-113
Identity = 194/300 (64.67%), Postives = 208/300 (69.33%), Query Frame = 1
Query:    1 AEEFRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG------------------------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRG 720
            A  F+ KFN+WY+RFRKR GFSIRRRTSVGQKLP G+EGMAWAT+MKLR AL+KRAGE                  DLTSEQL SV A VFEELGNMDQTPVQHEMPVETTLEK GAKDARISTGG+EKERFTL LAVMA+G +V  RIIFKGTPFIPPT SGK KST PRK                                           W D REC  WI  SWKLRPNNGSI++QRP ILVLDDFKCH+DE FIA L++ A T VI IPGGLT LLQPLDRMLNKQMKRLLRG
Sbjct:  206 ALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGEEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRG 504          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 1.750e-112
Identity = 187/282 (66.31%), Postives = 206/282 (73.05%), Query Frame = 1
Query:   16 AKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRG 720
            +KF +WY+RF KR  FSIRRRTSVGQKLP GHEGMAWATLMKLR ALL+RAGE                  DL+S QLE V   +FEELGNMDQTPVQHEMPVETTLE  GAKDARI+TGGKEKERFTLCLAV A+G +VPLRIIFKGTPF+PP   GKGK+TQPRK                              WCD REC LWI +SWKLRPNNGSI++QR  ILVLDDFKCH+D+ FIA L+++ANTIVI IPGGL PL QPLDRMLNKQMKRLLRG
Sbjct:  183 SKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRG 464          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 343 bits (881), Expect = 9.560e-112
Identity = 186/313 (59.42%), Postives = 212/313 (67.73%), Query Frame = 1
Query:    1 AEEFRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTG--------------------------GKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRG 720
            A  F++KF +WY+RFRKR  FSIRRRTSVG +LP GHEGMAWATLMKLR ALL+RAGE                  DL+S QLE V   +F++LGNMDQTPVQ+EMPVETTLEK GAKDARI+TG                          GKEKERFTLCLAV A+G++VPLRIIFKGTPF+PP   GKGK+TQPRK                              WCD RE  LWI +SWKLRPNNGS+++QR  ILVLDDFKCH+D+ FIA L+++ANTIVI IPGGLTPLLQPLDRMLNKQMKRLLRG
Sbjct:  111 ALAFKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRG 423          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 2.020e-111
Identity = 191/295 (64.75%), Postives = 203/295 (68.81%), Query Frame = 1
Query:    1 AEEFRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKL--------RPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRG 720
            A  F+ KFN+WY+RFRKR GFSIRRR SVGQKLP G+EGMAWAT+ KLR AL+KRAGE                  DLTSEQ  SV A VFEELGNMDQTPVQHEMPVETTLE  G KDARISTGGKEKERFTL LAVMA+G  V   IIFKGTPFIPPT SGKGKST PRK                              W   +EC  WI  SWKL        RPNNGSI++QRP ILVLDDFKCH+DE FIA L + ANTIVI IPGGLTPLLQPLDRMLNKQMKRLLRG
Sbjct:  178 ALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRG 472          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 328 bits (840), Expect = 2.600e-105
Identity = 183/289 (63.32%), Postives = 202/289 (69.90%), Query Frame = 1
Query:    1 AEE---FRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-----------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLR 717
            AEE   FR KF NWY RFR+R G SIRRRTSVGQKLPTG+EG+A+ATLMKLR ALL+RAGE                  DL+  QLESVA  VFEELGNMDQTPVQ EMPVETTLEK GAKDARISTGGKEKERFTLCLAVMA+G +VPLRIIFKG PFIPP+ + +GK+TQPRKG                             W DA ECTLW+SESW  RPN+GS+IKQR SILVLDDF+               NT VILIPGGLTPLLQPLDRML+K+MKRL+R
Sbjct:  194 AEETLAFRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFR--------------TNTTVILIPGGLTPLLQPLDRMLDKEMKRLMR 468          
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 324 bits (830), Expect = 9.550e-105
Identity = 195/383 (50.91%), Postives = 222/383 (57.96%), Query Frame = 1
Query:    1 AEE---FRAKFNNWYRRFRKRRGFSIRRRTSVGQKLPTGHEGMAWATLMKLRAALLKRAGE------------------DLTSEQLESVAATVFEELGNMDQTPVQHEMPVETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFIPPTKSGKGKSTQPRKG-------------------------------------------------------------------------------------------WCDARECTLWISESWKLRPNNGSIIKQRPSILVLDDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLRGCTPPTPPRQSPTPRRGS*SRRDVGRCRRGAR 813
            AEE   F+ KF NW+ RFR+RRG SIRR T+VGQKLPTG+EG+A+ATLMKLR ALL+RAGE                  DL+  QLESVAA VFEELGNMDQTPVQ EMPVETTLEKRGAKDARISTGGKEK+RFTLCLAVMA+G +VPL+IIFKG PFIPP+ +G+G++TQPRKG                                                                                           WCDAREC LW+SESW              SILVLDDF+CHR E+FI DL+++ NTIVILIPGGLTPL QPLDRMLNK+MKRL+RG            PRR S +RR V  CRRGAR
Sbjct:  116 AEETLAFKTKFKNWHHRFRERRGVSIRRHTNVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRHPPAPDESPIKGKDLSPAQLESVAAEVFEELGNMDQTPVQQEMPVETTLEKRGAKDARISTGGKEKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPVSGMSFGVQEKNWCDARECILWLSESW--------------SILVLDDFRCHRSESFIEDLRRRTNTIVILIPGGLTPLFQPLDRMLNKEMKRLMRGRYTQYMASAIADPRRASFNRRGVCSCRRGAR 484          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig111.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE2.460e-12167.60DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.140e-12068.53DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE2.190e-11466.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE2.670e-11466.55Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KRZ8_9PHAE8.530e-11364.67DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.750e-11266.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE9.560e-11259.42DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JTG5_9PHAE2.020e-11164.75DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE2.600e-10563.32DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE9.550e-10550.91DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig111contigP-littoralis_Contig111:420189..421448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size899
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.05e-104
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size657
COG categoryCH
BRITEko00000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig111.83.1prot_P-littoralis_Contig111.83.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig111 420306..421323 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789443.0540447-UTR-P-littoralis_Contig111:420188..4203051680789443.0540447-UTR-P-littoralis_Contig111:420188..420305Pylaiella littoralis U1_48UTRP-littoralis_Contig111 420189..420305 +
1680789443.1094513-UTR-P-littoralis_Contig111:421323..4214481680789443.1094513-UTR-P-littoralis_Contig111:421323..421448Pylaiella littoralis U1_48UTRP-littoralis_Contig111 421324..421448 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789443.0660737-CDS-P-littoralis_Contig111:420305..4203571680789443.0660737-CDS-P-littoralis_Contig111:420305..420357Pylaiella littoralis U1_48CDSP-littoralis_Contig111 420306..420357 +
1680789443.0745282-CDS-P-littoralis_Contig111:420411..4205641680789443.0745282-CDS-P-littoralis_Contig111:420411..420564Pylaiella littoralis U1_48CDSP-littoralis_Contig111 420412..420564 +
1680789443.0831447-CDS-P-littoralis_Contig111:420784..4209261680789443.0831447-CDS-P-littoralis_Contig111:420784..420926Pylaiella littoralis U1_48CDSP-littoralis_Contig111 420785..420926 +
1680789443.0970936-CDS-P-littoralis_Contig111:421013..4213231680789443.0970936-CDS-P-littoralis_Contig111:421013..421323Pylaiella littoralis U1_48CDSP-littoralis_Contig111 421014..421323 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig111.83.1

>prot_P-littoralis_Contig111.83.1 ID=prot_P-littoralis_Contig111.83.1|Name=mRNA_P-littoralis_Contig111.83.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=219bp
MAWATLMKLRAALLKRAGEDLTSEQLESVAATVFEELGNMDQTPVQHEMP
VETTLEKRGAKDARISTGGKEKERFTLCLAVMANGSRVPLRIIFKGTPFI
PPTKSGKGKSTQPRKGWCDARECTLWISESWKLRPNNGSIIKQRPSILVL
DDFKCHRDEAFIADLQKKANTIVILIPGGLTPLLQPLDRMLNKQMKRLLR
GCTPPTPPRQSPTPRRGS*
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mRNA from alignment at P-littoralis_Contig111:420189..421448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig111.83.1 ID=mRNA_P-littoralis_Contig111.83.1|Name=mRNA_P-littoralis_Contig111.83.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1260bp|location=Sequence derived from alignment at P-littoralis_Contig111:420189..421448+ (Pylaiella littoralis U1_48)
GCAGAGGAGTTCCGGGCCAAGTTCAACAACTGGTATCGGCGTTTCCGCAA GCGCCGCGGGTTTAGTATTCGCCGGCGTACCAGCGTGGGTCAGAAGCTGC CCACAGGACACGAGGGCATGGCGTGGGCAACGTTGATGAAGCTGCGGGCT GCTCTCCTGAAGCGCGCTGGTGAGATTTACGAGGAGCGCCACCCGTCCCC ACCTGGCGAGAGCCCCATGAAAGGGGAGGACCTGACTTCCGAGCAGCTGG AGTCGGTGGCCGCGACGGTTTTCGAGGAACTCGGCAACATGGACCAAACG CCTGTCCAGCACGAGATGCCGGTCGAAACGACTCTGGAAAAGCGTGGCGC CAAGGATGCTCGCATCAGCACCGGAGGTACGAGTCTTATCTATAGGTACT TCAACTTTTGTTTTGTGCTGTTGCTTGTCGGGATTTGGTCTCTCTCTAGG TCGACAAGAATTATGATTTTGGTCTACGCTGCTTTACTGTTTGTTCACTG TTTTGGGTCGGCAGTTGGTCTCTGTCATAATATAAAACAACAGACGAACT GAAAAACTTTTCTCCCCTCGTCTACTTTGTACTGGTTCCCCCGCAGGCAA GGAGAAGGAACGCTTCACGCTCTGTCTTGCTGTCATGGCGAACGGCAGCA GGGTTCCACTACGGATTATCTTCAAGGGCACGCCGTTCATCCCTCCGACC AAGTCAGGGAAGGGCAAGAGCACTCAGCCGCGGAAGGGGTCGATCGCGGC AGAGATTGTCCCCGGGGACCGTACCAAGCACGGGCAcCCCGCCGGCGGCA TGTCGTTTGGAGTGCAGGAGAAGAGCTGGTGCGACGCGCGGGAGTGCACC CTGTGGATCTCGGAGAGCTGGAAGCTGCGCCCCAACAACGGAAGCATAAT CAAGCAGCGCCCAAGCATCTTGGTGTTGGACGACTTCAAGTGCCACCGGG ACGAGGCTTTCATCGCCGACCTCCAGAAGAAAGCTAACACCATCGTCATC CTCATCCCGGGCGGTTTGACGCCGCTGCTACAGCCGCTGGACCGCATGCT CAACAAGCAGATGAAGCGGCTGCTGCGGGGATGTACACCGCCCACACCGC CAAGGCAGTCACCGACCCCAAGACGGGGAAGCTGAAGCCGCCGGGACGTG GGCAGGTGTCGACGTGGTGCAAGGAGGCGTGGGCGCAGATCACTCCTGAC CTGGTCAAGACTTGCTTCAAGATCTGCGGGCTCACGCTTGCTCTTGATGG CAGCGAGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig111:420189..421448+

>mRNA_P-littoralis_Contig111.83.1 ID=mRNA_P-littoralis_Contig111.83.1|Name=mRNA_P-littoralis_Contig111.83.1|organism=Pylaiella littoralis U1_48|type=CDS|length=657bp|location=Sequence derived from alignment at P-littoralis_Contig111:420189..421448+ (Pylaiella littoralis U1_48)
ATGGCGTGGGCAACGTTGATGAAGCTGCGGGCTGCTCTCCTGAAGCGCGC
TGGGGAGGACCTGACTTCCGAGCAGCTGGAGTCGGTGGCCGCGACGGTTT
TCGAGGAACTCGGCAACATGGACCAAACGCCTGTCCAGCACGAGATGCCG
GTCGAAACGACTCTGGAAAAGCGTGGCGCCAAGGATGCTCGCATCAGCAC
CGGAGGCAAGGAGAAGGAACGCTTCACGCTCTGTCTTGCTGTCATGGCGA
ACGGCAGCAGGGTTCCACTACGGATTATCTTCAAGGGCACGCCGTTCATC
CCTCCGACCAAGTCAGGGAAGGGCAAGAGCACTCAGCCGCGGAAGGGCTG
GTGCGACGCGCGGGAGTGCACCCTGTGGATCTCGGAGAGCTGGAAGCTGC
GCCCCAACAACGGAAGCATAATCAAGCAGCGCCCAAGCATCTTGGTGTTG
GACGACTTCAAGTGCCACCGGGACGAGGCTTTCATCGCCGACCTCCAGAA
GAAAGCTAACACCATCGTCATCCTCATCCCGGGCGGTTTGACGCCGCTGC
TACAGCCGCTGGACCGCATGCTCAACAAGCAGATGAAGCGGCTGCTGCGG
GGATGTACACCGCCCACACCGCCAAGGCAGTCACCGACCCCAAGACGGGG
AAGCTGA
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