mRNA_P-littoralis_Contig1109.2.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1109.2.1
Unique NamemRNA_P-littoralis_Contig1109.2.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5L4Q5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.350e-25
Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1
Query:   25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
            +G I+V +RVAVA+R+LAG SY D+AL+FG+++P  + I+W VIDAINKTPAVG F F  TEE C +        +G ST+G+F  VVAAVDGLF++ K
Sbjct:   31 NGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNA---NRFEGKSTDGIFCWVVAAVDGLFIKAK 126          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 9.370e-25
Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECA-QVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
            RT SG + V IR+AVA+RM AG SYID+ALLFG+A   VF +MWQV+DAIN TP VGPF+F QT EEC  Q R      +  ST G F   VAA DGLFV+
Sbjct:  116 RTSSGAVPVKIRLAVALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAR----EWEVKSTGGAFAGCVAAGDGLFVK 212          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.940e-24
Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
            RT+SG + V IR+AVA+RMLAG SY+D+A+LFG+A   VF ++W+V+DAIN TP VG F+F QT ++CA+        +  ST GVF   VAA DGLFV+
Sbjct:  117 RTRSGAVPVKIRLAVALRMLAGASYLDVAVLFGIAKETVFHVLWEVVDAINNTPEVGAFFFPQTRDDCARQA---KEWEAKSTGGVFSGCVAAGDGLFVK 213          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5K8X4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X4_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.240e-24
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
            +G I+V +RVAVA+R+LAG SY D+AL+FG+++P  + I+W VIDAINKTPAVG F F  TEE C +        +  ST+G+F  VVAAVDGLF++ K
Sbjct:   95 NGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNA---NRFKEKSTDGIFSWVVAAVDGLFIKTK 190          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5K9T7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T7_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.580e-24
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
            +G I+V +RVAVA+R+LAG SY D+AL+FG+++P  + I+W VIDAINKTPAVG F F  TEE C +        +  ST+G+F  VVAAVDGLF++ K
Sbjct:    8 NGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCVRNA---NIFKEKSTDGIFSWVVAAVDGLFIKAK 103          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.060e-23
Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
            RT +G ISV IR+AVA+R+LAG SY+D+A++FG+ +P V+  +W VIDAIN TP VG F+F QTE +C   R      +  STNG+F   VA VDGLFV+
Sbjct:  115 RTLNGAISVQIRLAVALRILAGASYLDVAVMFGLGLPTVYATLWMVIDAINSTPEVGAFFFPQTEFDC---RGHAARFKRKSTNGIFSFCVACVDGLFVK 211          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5KUP3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP3_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 1.150e-23
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
            +G I+V +RVAVA+R+LAG  Y D+AL+FG+++P  + I+W VIDAINKTPAVG F F  TEE C +        +  ST+G+F  VVAAVDGLF++ K
Sbjct:   76 NGAIAVEVRVAVALRILAGARYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNA---NRFKKKSTDGIFSWVVAAVDGLFIKAK 171          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JMM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM2_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.800e-23
Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:   16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
            RT SG + V I +AVA+RMLAG SY+D+A+LFG+A   VF  +W+V+DAIN TP VG F+F QT ++CA+        +  ST GVF   VAA DGLFV+
Sbjct:  117 RTGSGAVPVKISLAVALRMLAGASYLDVAVLFGIAKETVFHALWEVVDAINNTPEVGAFFFPQTRDDCARQA---KEWEAKSTGGVFSGCVAAGDGLFVK 213          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JPH5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH5_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 4.400e-23
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
            +G I+V +RVA A+R+LAGGSY D+AL+FG++  + F I+WQVIDAIN+TPA+G F F  TEE C +        +  ST+G+F  VVAAVDGLF++ K
Sbjct:   15 NGAIAVEVRVAAALRILAGGSYWDVALMFGLSRAVTFDILWQVIDAINETPAIGAFDFPLTEEGCMRNA---NRFKEKSTDGIFSWVVAAVDGLFIKAK 110          
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JEM6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM6_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.840e-22
Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:   22 KSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
            ++G ISV +RVAVA+R+LAG SY D+ ++FG+++ + + I+W+VIDAIN TPAVG F F  TEE C +        +  ST+G+F  VVAAVDGLF++ +
Sbjct:   30 RNGAISVEVRVAVALRILAGASYWDVLVMFGLSVAVTYQILWEVIDAINNTPAVGAFDFPLTEEGCMRNA---NRFKDKSTDGIFSWVVAAVDGLFIKAE 126          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L4Q5_9PHAE4.350e-2555.56Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JDE6_9PHAE9.370e-2559.41DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JHK3_9PHAE1.940e-2454.00DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K8X4_9PHAE2.240e-2454.55DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K9T7_9PHAE4.580e-2454.55DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5L386_9PHAE1.060e-2354.00DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KUP3_9PHAE1.150e-2353.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMM2_9PHAE1.800e-2353.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH5_9PHAE4.400e-2353.54DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JEM6_9PHAE1.840e-2250.00DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1109contigP-littoralis_Contig1109:60556..62017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size562
Hectar predicted targeting categorysignal peptide
Exons2
Cds size348
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.992205-UTR-P-littoralis_Contig1109:60555..607001680789438.992205-UTR-P-littoralis_Contig1109:60555..60700Pylaiella littoralis U1_48UTRP-littoralis_Contig1109 60556..60700 -
1680789439.0332053-UTR-P-littoralis_Contig1109:61948..620171680789439.0332053-UTR-P-littoralis_Contig1109:61948..62017Pylaiella littoralis U1_48UTRP-littoralis_Contig1109 61949..62017 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789439.0029027-CDS-P-littoralis_Contig1109:60700..608911680789439.0029027-CDS-P-littoralis_Contig1109:60700..60891Pylaiella littoralis U1_48CDSP-littoralis_Contig1109 60701..60891 -
1680789439.0223196-CDS-P-littoralis_Contig1109:61791..619481680789439.0223196-CDS-P-littoralis_Contig1109:61791..61948Pylaiella littoralis U1_48CDSP-littoralis_Contig1109 61792..61948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1109.2.1prot_P-littoralis_Contig1109.2.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1109 60701..61948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1109.2.1

>prot_P-littoralis_Contig1109.2.1 ID=prot_P-littoralis_Contig1109.2.1|Name=mRNA_P-littoralis_Contig1109.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp
MLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEEC
AQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCKKVDGVKPSEGSAKTGK
GRPTLTADGRLGASF*
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mRNA from alignment at P-littoralis_Contig1109:60556..62017-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1109.2.1 ID=mRNA_P-littoralis_Contig1109.2.1|Name=mRNA_P-littoralis_Contig1109.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1462bp|location=Sequence derived from alignment at P-littoralis_Contig1109:60556..62017- (Pylaiella littoralis U1_48)
TGTCCTTCAGGTGTGCGCACTAAGAGCGGCGTTATCAGTGTTCACATACG TGTTGCTGTGGCTATCCGGATGCTTGCTGGCGGCTCCTACATCGACATTG CGCTGCTCTTTGGCGTTGCAATCCCGATCGTGTTCTTGATCATGTGGCAA GTGATCGATGCCATAAACAAGACGCCGGCAGTGGGTCCCTTTTACTTCCA GCAAACGGAGGAGGAGTGCGCTCAGGCTGCAGGCAAATGGAAGGTGTGTC TGCAAATGAGGTGTTGTTGTTCCTTTATTGCGCGTGTCAAATTGTCATGA CATGGGTACGGGTGCCAACGATATTTCTTGGTCTGTTCTCAGTATACCAT AAAACCCTTTGTTTCCCCCCACCATTTATGATTCCCCCCATCTACTTTTC AGCCGAAAAGCATGGAAACTTTGATTTGCCCCCGGGAAGACGCAGAAAAT AAGAAAAAAAAAGCCCCCCCCGGCATCCCGTGAATTTTTACCTTTGGTAG TTGTTTTTCGAAGACTTCCACCCGGGGTTGCTTGATTTTTCAACACTTTG TTGTGCTTTCGGTATCGTTGCACATGGTTGAAGGGGGTGACACGTCTTTG TGTTCGGCCCTTGCACGGCATCCCCACGTGCTGTCCTCCTTCCTTTTCCT CCTGAATACTTGCTCGTATATCTTGTCCATGGCGGGTTCAGCAAACTCTA GAGAGAGAGAGGGCGCGCGTGTGTGTGTCCGTCTGCTGTGTGCGTGCTTT ATGTATCAATTTGTTTTTTGTGCCTTCCCCCCAGGGAAGAGTATCCGCCG GGGAAGATTCGAAAAATAAATGTCCCCCCTCCCCCGTCAGTTTACCCCCG AGGGGTCGTATTCAAAGAAAAAAGATGCCCTTCCTGGAGTAAAAGAAAGG TTTTTGCGGTACTCATTTTGCGGTATTCATCTAACATTGAGGTTCCCGAA TTCAAACTAAACCGATCTTGCGATGCTAGTTTATGTTTTGTTACCTTTTG TTTCATATATTCAGTCATACGACTCCCCCCTTAGAGTTGTAGACACACTT TCCTGACCCCGATCCCGACCCCTGATCCCCACCCCGGCGCGCGCTCCCCA TCACCCACTACCCGCCTTTCTTTTGCTTCGTATCCCACCACCCACCACGC AGGGACTGAGCACCAATGGCGTGTTCGATCATGTGGTGGCCGCTGTGGAT GGTTTGTTCGTCAGATGCAAGAAGGTCGATGGAGTGAAGCCTTCTGAGGG GTCCGCGAAGACGGGCAAGGGGCGGCCGACCCTCACCGCTGACGGCAGGC TAGGGGCGTCCTTCTAGAGCAGCGCGCCGGCACCGTCCAGAAGCGGGGAG TCGCCGGCGCGGCTTGCTCTGCGGATGATTTTGGAGGACGGCAAGCAATG GCGCCCGGAGTACAACAGGCTGCGCAACTCGTAAATACTGCACGGGTCGT ATGGTGGCTGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig1109:60556..62017-

>mRNA_P-littoralis_Contig1109.2.1 ID=mRNA_P-littoralis_Contig1109.2.1|Name=mRNA_P-littoralis_Contig1109.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1109:60556..62017- (Pylaiella littoralis U1_48)
ATGCTTGCTGGCGGCTCCTACATCGACATTGCGCTGCTCTTTGGCGTTGC
AATCCCGATCGTGTTCTTGATCATGTGGCAAGTGATCGATGCCATAAACA
AGACGCCGGCAGTGGGTCCCTTTTACTTCCAGCAAACGGAGGAGGAGTGC
GCTCAGGTTCGTATCCCACCACCCACCACGCAGGGACTGAGCACCAATGG
CGTGTTCGATCATGTGGTGGCCGCTGTGGATGGTTTGTTCGTCAGATGCA
AGAAGGTCGATGGAGTGAAGCCTTCTGAGGGGTCCGCGAAGACGGGCAAG
GGGCGGCCGACCCTCACCGCTGACGGCAGGCTAGGGGCGTCCTTCTAG
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