mRNA_P-littoralis_Contig1109.2.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5L4Q5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Q5_9PHAE) HSP 1 Score: 107 bits (267), Expect = 4.350e-25 Identity = 55/99 (55.56%), Postives = 73/99 (73.74%), Query Frame = 1
Query: 25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
+G I+V +RVAVA+R+LAG SY D+AL+FG+++P + I+W VIDAINKTPAVG F F TEE C + +G ST+G+F VVAAVDGLF++ K
Sbjct: 31 NGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNA---NRFEGKSTDGIFCWVVAAVDGLFIKAK 126
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JDE6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDE6_9PHAE) HSP 1 Score: 109 bits (272), Expect = 9.370e-25 Identity = 60/101 (59.41%), Postives = 70/101 (69.31%), Query Frame = 1
Query: 16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECA-QVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
RT SG + V IR+AVA+RM AG SYID+ALLFG+A VF +MWQV+DAIN TP VGPF+F QT EEC Q R + ST G F VAA DGLFV+
Sbjct: 116 RTSSGAVPVKIRLAVALRMFAGASYIDVALLFGIAKESVFNVMWQVVDAINNTPTVGPFFFPQTVEECTRQAR----EWEVKSTGGAFAGCVAAGDGLFVK 212
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JHK3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK3_9PHAE) HSP 1 Score: 107 bits (268), Expect = 1.940e-24 Identity = 54/100 (54.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query: 16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
RT+SG + V IR+AVA+RMLAG SY+D+A+LFG+A VF ++W+V+DAIN TP VG F+F QT ++CA+ + ST GVF VAA DGLFV+
Sbjct: 117 RTRSGAVPVKIRLAVALRMLAGASYLDVAVLFGIAKETVFHVLWEVVDAINNTPEVGAFFFPQTRDDCARQA---KEWEAKSTGGVFSGCVAAGDGLFVK 213
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5K8X4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X4_9PHAE) HSP 1 Score: 104 bits (260), Expect = 2.240e-24 Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
+G I+V +RVAVA+R+LAG SY D+AL+FG+++P + I+W VIDAINKTPAVG F F TEE C + + ST+G+F VVAAVDGLF++ K
Sbjct: 95 NGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNA---NRFKEKSTDGIFSWVVAAVDGLFIKTK 190
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5K9T7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9T7_9PHAE) HSP 1 Score: 105 bits (262), Expect = 4.580e-24 Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
+G I+V +RVAVA+R+LAG SY D+AL+FG+++P + I+W VIDAINKTPAVG F F TEE C + + ST+G+F VVAAVDGLF++ K
Sbjct: 8 NGAIAVEVRVAVALRILAGASYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCVRNA---NIFKEKSTDGIFSWVVAAVDGLFIKAK 103
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5L386_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L386_9PHAE) HSP 1 Score: 106 bits (264), Expect = 1.060e-23 Identity = 54/100 (54.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query: 16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
RT +G ISV IR+AVA+R+LAG SY+D+A++FG+ +P V+ +W VIDAIN TP VG F+F QTE +C R + STNG+F VA VDGLFV+
Sbjct: 115 RTLNGAISVQIRLAVALRILAGASYLDVAVMFGLGLPTVYATLWMVIDAINSTPEVGAFFFPQTEFDC---RGHAARFKRKSTNGIFSFCVACVDGLFVK 211
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5KUP3_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP3_9PHAE) HSP 1 Score: 103 bits (256), Expect = 1.150e-23 Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
+G I+V +RVAVA+R+LAG Y D+AL+FG+++P + I+W VIDAINKTPAVG F F TEE C + + ST+G+F VVAAVDGLF++ K
Sbjct: 76 NGAIAVEVRVAVALRILAGARYWDVALMFGLSVPTTYQILWSVIDAINKTPAVGAFDFPLTEEGCMRNA---NRFKKKSTDGIFSWVVAAVDGLFIKAK 171
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JMM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM2_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.800e-23 Identity = 53/100 (53.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query: 16 RTKSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVR 315
RT SG + V I +AVA+RMLAG SY+D+A+LFG+A VF +W+V+DAIN TP VG F+F QT ++CA+ + ST GVF VAA DGLFV+
Sbjct: 117 RTGSGAVPVKISLAVALRMLAGASYLDVAVLFGIAKETVFHALWEVVDAINNTPEVGAFFFPQTRDDCARQA---KEWEAKSTGGVFSGCVAAGDGLFVK 213
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JPH5_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH5_9PHAE) HSP 1 Score: 102 bits (254), Expect = 4.400e-23 Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 25 SGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
+G I+V +RVA A+R+LAGGSY D+AL+FG++ + F I+WQVIDAIN+TPA+G F F TEE C + + ST+G+F VVAAVDGLF++ K
Sbjct: 15 NGAIAVEVRVAAALRILAGGSYWDVALMFGLSRAVTFDILWQVIDAINETPAIGAFDFPLTEEGCMRNA---NRFKEKSTDGIFSWVVAAVDGLFIKAK 110
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Match: A0A6H5JEM6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM6_9PHAE) HSP 1 Score: 100 bits (248), Expect = 1.840e-22 Identity = 50/100 (50.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query: 22 KSGVISVHIRVAVAIRMLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECAQVRIPPPTTQGLSTNGVFDHVVAAVDGLFVRCK 321
++G ISV +RVAVA+R+LAG SY D+ ++FG+++ + + I+W+VIDAIN TPAVG F F TEE C + + ST+G+F VVAAVDGLF++ +
Sbjct: 30 RNGAISVEVRVAVALRILAGASYWDVLVMFGLSVAVTYQILWEVIDAINNTPAVGAFDFPLTEEGCMRNA---NRFKDKSTDGIFSWVVAAVDGLFIKAE 126 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1109.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1109.2.1 >prot_P-littoralis_Contig1109.2.1 ID=prot_P-littoralis_Contig1109.2.1|Name=mRNA_P-littoralis_Contig1109.2.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=116bp MLAGGSYIDIALLFGVAIPIVFLIMWQVIDAINKTPAVGPFYFQQTEEECback to top mRNA from alignment at P-littoralis_Contig1109:60556..62017- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig1109.2.1 ID=mRNA_P-littoralis_Contig1109.2.1|Name=mRNA_P-littoralis_Contig1109.2.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1462bp|location=Sequence derived from alignment at P-littoralis_Contig1109:60556..62017- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig1109:60556..62017- >mRNA_P-littoralis_Contig1109.2.1 ID=mRNA_P-littoralis_Contig1109.2.1|Name=mRNA_P-littoralis_Contig1109.2.1|organism=Pylaiella littoralis U1_48|type=CDS|length=348bp|location=Sequence derived from alignment at P-littoralis_Contig1109:60556..62017- (Pylaiella littoralis U1_48)back to top |