mRNA_P-littoralis_Contig1106.11.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1106.11.1
Unique NamemRNA_P-littoralis_Contig1106.11.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5JXZ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXZ6_9PHAE)

HSP 1 Score: 236 bits (602), Expect = 5.860e-72
Identity = 123/204 (60.29%), Postives = 152/204 (74.51%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAPLL 612
            D +RPL+I+SRLQA R +LD SAVG R  +W   ++RFRDP H VR+IVD + V+H +PN+I QPNISAEK++KMW+   AKWN   ANW   SGNNQP ++FCQGD+D +++G AI+KYPELDQ CN LLPED QREDDGTG   G TGGAERRA+AKREG RL+   R G K+ KK  R QSVA+AT  A+ +A   + PLL
Sbjct:   56 DSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHNVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPIANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQ-KKQGRRQSVAEATSVAMKTALLDIEPLL 258          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: D7FJ39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ39_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 2.200e-70
Identity = 123/204 (60.29%), Postives = 152/204 (74.51%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAPLL 612
            D +RPLLI+SRLQA R  LD S+VG R+++W   + RFRDPDH+VR+IVD + V+H DPN+I QPNISAEKLS+MWA   AKWNQ +A+W   SGNNQP ++FCQG +D +++G AI+KYPEL+Q CN LLPE  QREDDGTG     TGGA+RRA+AKREG RLH   R GKK+  K    QSVA+AT  A+ +A   M PLL
Sbjct:  193 DAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYADWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVGTGGADRRAAAKREGARLHEQNRRGKKQKNKGV-GQSVAEATSAAMKTAIKDMEPLL 395          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5JZX9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZX9_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 2.810e-67
Identity = 120/204 (58.82%), Postives = 149/204 (73.04%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAPLL 612
            D +RPL+I+SRLQA R +LD SAVG R  +W   ++RFRDP H VR+IVD + V+H +PN+I QPNISAEK++KMW+   AKWN  +ANW   SGNNQP ++FCQGD+D +++G AI+KYPELDQ CN  LP D QREDDGTG   G TGGAERRASAKREG RL    R G K+ KK    Q+VA+AT  A+ +A   + PLL
Sbjct:  214 DSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQNVAEATSVAMKTALLDIEPLL 416          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5KNY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNY9_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 1.790e-66
Identity = 120/204 (58.82%), Postives = 150/204 (73.53%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAPLL 612
            D +RPL+I+SRLQA R +LD SAVG R  +W   ++RFRDP H VR  VD ++V+H +PN+I QPNISAEK++KMW+   AKWN  +ANW   SGNNQP ++FCQGD+D +++G AI+KYPELDQ CN LLPED QREDDGTG   G TGGAER A+AKREG RL+   R G  + KK  R QSVA+AT  A+ +A   + PLL
Sbjct:  220 DSIRPLVINSRLQATRQELDNSAVGPRKHLWTEVTDRFRDPRHNVRISVDDELVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKRESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGDGNGCTGGAERLAAAKREGARLYEQNRRGTMQKKKGGR-QSVAEATSVAMKTALLEVEPLL 422          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5KKV3_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KKV3_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 7.860e-66
Identity = 122/204 (59.80%), Postives = 150/204 (73.53%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAPLL 612
            D +RPLLI+SRLQA R  LD S+VG R+ +W   + RFRDPDH+VR+IVD + V+H DPN+I QPNISAEKLS+MWA   AKWNQ +ANW   SGNNQP ++FCQG +D +++G AI+KYPEL+Q CN LLPE  QREDDGTG     TGGA+RRA+AKREG RL+   R GKK   K    QSVA+AT  A+ +A   + PLL
Sbjct:  428 DAIRPLLIESRLQATRQDLDTSSVGPRNDLWTEVTTRFRDPDHQVRKIVDDQQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDGTGEGIVCTGGADRRAAAKREGARLNEQNRRGKKPKNKGV-GQSVAEATSAAMKTALKDIEPLL 630          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5KFU0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFU0_9PHAE)

HSP 1 Score: 226 bits (577), Expect = 3.090e-65
Identity = 120/204 (58.82%), Postives = 148/204 (72.55%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAPLL 612
            D +RPL+I+SRLQA R +LD SAVG R  +W   ++RFRDP H VR+IVD + V+H +PN+I QPNISAEK++KMW+   AKWN  +ANW   SGNNQP ++F QGD+D +++G AI+KYPELDQ CN  LP D QREDDGTG   G TGGAERRASAKREG RL    R G K+ KK    QSVA+AT  A+ +A   + PLL
Sbjct:  376 DSIRPLVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHHVRKIVDDEQVSHVNPNIIQQPNISAEKITKMWSAAKAKWNTPNANWKSESGNNQPWLSFAQGDTDTYILGCAIEKYPELDQVCNNPLPVDAQREDDGTGEGDGCTGGAERRASAKREGARLDEQNRRGTKQKKKGG-GQSVAEATSVAMKTALLDIEPLL 578          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: D7FU69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU69_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 8.250e-65
Identity = 110/174 (63.22%), Postives = 134/174 (77.01%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKK 522
            D +RPLLI+SRLQA R  LD S+VG R+++W   + RFRDPDH+VR+IVD + V+H DPN+I QPNISAEKLS+MWA   AKWNQ +ANW   SGNNQP ++FCQG +D +++G AI+KYPEL+Q CN LLPE  QREDD TG     TGGA+RRA+AKREG RLH   R GKK
Sbjct:  316 DAIRPLLIESRLQATRQDLDTSSVGPRNELWTEVTARFRDPDHQVRKIVDDEQVSHVDPNIIQQPNISAEKLSRMWATAKAKWNQPYANWKSESGNNQPWLSFCQGCTDTYVLGCAIEKYPELNQVCNNLLPEGAQREDDWTGEGIVGTGGADRRAAAKREGARLHEQNRRGKK 489          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5KNM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNM0_9PHAE)

HSP 1 Score: 216 bits (549), Expect = 2.010e-59
Identity = 112/190 (58.95%), Postives = 142/190 (74.74%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGT-SGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADAT 567
            D +RP +I+SRLQA R +LD SAVG R  +W   ++RFRDP H VR+IVD +  +H +PN+I QP+I AEK++K W+   AKWN  +ANW  + SGNNQP ++FCQGD+D +++G AI+KYPELDQ CN LLPED QREDDGTG   G TGGAERRA+AKREG RL+   R G K+ K+  R QSVA+AT
Sbjct:  750 DSIRPRVINSRLQATRQELDTSAVGPRKHLWTEVTDRFRDPRHNVRKIVDDEQASHVNPNIIQQPDIFAEKITKTWSAAKAKWNTPNANWKKSESGNNQPWLSFCQGDTDTYILGCAIEKYPELDQVCNNLLPEDAQREDDGTGEGDGCTGGAERRAAAKREGARLYEQNRRGTKQKKEGGR-QSVAEAT 938          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5JSN7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSN7_9PHAE)

HSP 1 Score: 195 bits (496), Expect = 2.720e-53
Identity = 95/165 (57.58%), Postives = 119/165 (72.12%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERL 495
            D + PL I+SR+QA R +LD SAV  R+ +W   ++RFRD  H VR+IVD   V+H +PN+I QPN SAEK++  W+   A WN  +ANW+  SGNNQP V+F QGD+D +++G A +KYPELDQ CN LLPED QREDDGTG     TGGAERR +AKREG RL
Sbjct:  351 DSIHPLAINSRMQATRQELDTSAVWPRNNLWTEVTDRFRDRGHNVRKIVDDGQVSHVNPNIIQQPNRSAEKITNTWSAARANWNTPYANWTSESGNNQPWVSFSQGDTDTYILGCAFEKYPELDQVCNNLLPEDAQREDDGTGEGDACTGGAERRTAAKREGARL 515          
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Match: A0A6H5KQ52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ52_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.770e-52
Identity = 102/204 (50.00%), Postives = 131/204 (64.22%), Query Frame = 1
Query:    1 DDVRPLLIDSRLQANRAQLDASAVGSRSKVWQVASERFRDPDHEVRRIVDHKMVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVNFCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGAERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAPLL 612
            D +RPL+I+SRLQA R +LD SAVG R  +W   ++RFRDP H VR+IVD + V+H   N+I QPNISAEK++ M +   AKWN  +ANW    GNNQP ++FCQGD+D +++G A++KYPELDQ CN LLPED QREDD TG   G                  +   R G K+ KK  R QSVA+AT  A+ +A   + PLL
Sbjct:   90 DSIRPLVINSRLQATRQELDTSAVGPRKNLWPEVTDRFRDPRHNVRKIVDDEQVSHVIANIIQQPNISAEKITPMRSAAKAKWNTPNANWKSEPGNNQPWLSFCQGDTDTYILGCAVEKYPELDQVCNNLLPEDAQREDDRTGEGDG--------------WREAYEQNRRGTKQKKKGGR-QSVAEATSVAMKTALLDIEPLL 278          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1106.11.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXZ6_9PHAE5.860e-7260.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ39_ECTSI2.200e-7060.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JZX9_9PHAE2.810e-6758.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNY9_9PHAE1.790e-6658.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKV3_9PHAE7.860e-6659.80Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KFU0_9PHAE3.090e-6558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU69_ECTSI8.250e-6563.22Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5KNM0_9PHAE2.010e-5958.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JSN7_9PHAE2.720e-5357.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ52_9PHAE1.770e-5250.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1106contigP-littoralis_Contig1106:39319..41903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIC6
Model size1064
Max annot lvl2880.D7FIC6|-
Hectar predicted targeting categoryother localisation
Exons3
Evalue2.72e-48
EggNOG OGs2EJXG@1|root,2SPZB@2759|Eukaryota
Cds size561
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.54658-UTR-P-littoralis_Contig1106:39318..394501680789438.54658-UTR-P-littoralis_Contig1106:39318..39450Pylaiella littoralis U1_48UTRP-littoralis_Contig1106 39319..39450 +
1680789438.5587702-UTR-P-littoralis_Contig1106:39713..397371680789438.5587702-UTR-P-littoralis_Contig1106:39713..39737Pylaiella littoralis U1_48UTRP-littoralis_Contig1106 39714..39737 +
1680789438.6004372-UTR-P-littoralis_Contig1106:41556..419031680789438.6004372-UTR-P-littoralis_Contig1106:41556..41903Pylaiella littoralis U1_48UTRP-littoralis_Contig1106 41557..41903 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789438.572807-CDS-P-littoralis_Contig1106:39737..398971680789438.572807-CDS-P-littoralis_Contig1106:39737..39897Pylaiella littoralis U1_48CDSP-littoralis_Contig1106 39738..39897 +
1680789438.584291-CDS-P-littoralis_Contig1106:41155..415561680789438.584291-CDS-P-littoralis_Contig1106:41155..41556Pylaiella littoralis U1_48CDSP-littoralis_Contig1106 41156..41556 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1106.11.1prot_P-littoralis_Contig1106.11.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1106 39738..41556 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1106.11.1

>prot_P-littoralis_Contig1106.11.1 ID=prot_P-littoralis_Contig1106.11.1|Name=mRNA_P-littoralis_Contig1106.11.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=187bp
MVAHCDPNVIHQPNISAEKLSKMWAGVAAKWNQSHANWSGTSGNNQPLVN
FCQGDSDIFLVGEAIKKYPELDQACNALLPEDVQREDDGTGAAAGETGGA
ERRASAKREGERLHGMKRAGKKKAKKDERAQSVADATEKAVSSATAGMAP
LLASMKPDTANGRPQTDDPGRQVAEIVLADECMTAL*
back to top

mRNA from alignment at P-littoralis_Contig1106:39319..41903+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1106.11.1 ID=mRNA_P-littoralis_Contig1106.11.1|Name=mRNA_P-littoralis_Contig1106.11.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2585bp|location=Sequence derived from alignment at P-littoralis_Contig1106:39319..41903+ (Pylaiella littoralis U1_48)
GACGACGTTCGCCCGCTGCTCATAGACAGTCGGCTTCAGGCGAATCGTGC TCAGCTTGATGCCTCTGCGGTGGGATCACGCAGCAAAGTGTGGCAAGTCG CCTCGGAACGCTTCAGGGACCCTGACCACGAGGTAACACCAGTGGAGGGG GAACACCCCCTCCGCCGGCAGTGACGATGGCATGAATATGTGATGTACCA ACTTGTTTTTCGCGCTGCACCCAGTAAGCCGTGTGTATACATTGTTTTGT TTTCATCACAGCGGGTTCAGGGGCAGGTCTGATCCCGGTTGGTCATCGGC ACCCAAATTCGTGTAGCACAGACGCACGCGAAATTTCGCCCGCACCATGT ACCTGATACCTCTCCCTTTTCAACCGATCGCTCCCGACTCTTAAGGTGCG ACGGATCGTCGACCACAAGATGGTCGCCCACTGCGATCCCAACGTAATCC ACCAACCGAACATTTCCGCGGAAAAGCTCTCCAAAATGTGGGCGGGGGTG GCGGCGAAGTGGAATCAGTCCCACGCAAACTGGAGTGGCACGTCTGGCAA CAATCAGCCTTTGGTGAACTTCTGCCAAGGTAAGAATGCCGTTCGAGCGT GGGTGGGAAACTCACATGCGTAGATAAAACGTTGTACAGGGGCCTTCGGC GTAAACTGTCCAGCGTGTCAATTTTCGTGTCGGCCGTAGGCGAGACGCCG CCTTCCCGGTCTTGTTTAGGTGATTCGATTCTGCACCGGTTCGTTTGTGT TTCTCATTCATTTTGTACTTCGAGTGAAAGGGAACAAGTTGGGCTCGCAA TCCGGGCTTAGACGATCCTAAGGTCAACAAACGTCTTTTTGCAAGGGTGT ACATAGACTGCTGCCGGGCTGATTGTTCCCGGATTTTGACGGAAGTGCTG GTGATTCCGGCCCGTCCCGGCAAAAACATAAAAATAACCGGCCCGTCCCG GCCCCCGGAAAGAAATAAAAAAAACATTATACCCGCCCGTCCCGGCACAC GAGAAAAAAAAAAAACGGCCCGGCCCGGCGCGTGAAAAAAGAACGTCCAT TCCCGGCACGTGAAAAAAAGAAACGCCCGCCCGGCCCAGCAAGTGGACAC AAAATTACCGCTCTATCCCGGCCATGTGAATACAAAAACTACCGAACACT CGCGATTAAGGCACAATGCAAAATACACCAATTTGCGTGCGATTGGTCAC ACCCTCGTCGTATCCAGTATACACTCCGCAAATGTCCGGGCCCATACAAC CACCCCGTGTCCCGGTGCTGAAAACGAAAACTACCGGCCCGTCCCGGCAC GTGAAAGCAAAAACTACTGGCTCGTCCCGGCACATGAAAACAAAAACAAC CGGCCCGGCCCGGCACGTGAAAAAAAATCGGCTCGGCCCGGGTGGAATAT TCCCGGCAAAACTACCGTCCCGGCAAGAATTGAAACCAATGTTTGGCACT CCGGCGCTACCGTTTTTTTTTTTTGTCGTCCACCCGAATTCTCCTCCCGG CCCGGCAAATTTCAATTTCAGCAGTCCATGTACACCCTTGCTTTTTTGTT CACCTTCCTCGTGCGGTGCTCGCGAATGACCTCGTTTCCCCTCACGGGTA ATTCTGTGAGCTGAAACCCCCCTTCGTCAGCATTCGACCTCCTGACCTAG CTGTAACATCTAATCGAGGTTACCGACTAAACAACCGGGGCGGCTCTCGG TGCATTTGAATCTTGGAAAATTTCAGCACATGTAGACGTACATGGGGTAA GGCGTAGTTCTGACGAATGGCGTGTGCGCTATGCTTGGCCCCTGCTGCCT GCTCCCCCCCCCCCCCCTCCCCCCTTTGACCGTCCAGGCGATTCCGACAT TTTCCTCGTCGGTGAAGCTATAAAAAAGTACCCCGAATTAGACCAGGCGT GCAACGCGCTATTACCAGAAGACGTCCAGCGAGAAGACGACGGGACCGGA GCAGCAGCTGGGGAGACGGGAGGTGCGGAACGCAGGGCGTCAGCCAAGCG CGAGGGCGAGCGGCTACACGGCATGAAACGTGCCGGCAAGAAGAAGGCTA AAAAGGACGAGAGGGCGCAGAGCGTGGCCGACGCTACGGAGAAGGCGGTG AGTTCGGCCACTGCGGGGATGGCACCGTTGCTGGCATCGATGAAGCCGGA CACCGCAAACGGGCGTCCCCAAACTGATGACCCGGGGCGCCAGGTTGCAG AAATCGTCCTCGCCGACGAATGCATGACCGCCCTATGAAAATTGGTCGAA GACACTCGCGGAAGAAGAGAAGAAAGTAGAGGAGGGGAGTGTCTTTCGGA AGAAATTTATGAGGGAAAGGATTGAAAGTCTTGAGAAGAGAATGGCTGCA ATGAAGTAGGCATTTCCACGCAAGACGATTCATGGGAGCGTAGAGTTTAA ATGACAAGCGCAACCTGTCGTTCATCACCAAAAGGTGTTGTTGAACGTGT GGAATGTCTGTGGGGTTGGTGTTACTCCTGTTGCTTGCGCAGCCGGGTGT GAGTACAGCCCAGAATCAGTTTTGAGTTGTTTCTGCTTTTTGCATTACGT CGTCGAGGTGAGCCGAGGATTGGCGGGAGGCTGGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig1106:39319..41903+

>mRNA_P-littoralis_Contig1106.11.1 ID=mRNA_P-littoralis_Contig1106.11.1|Name=mRNA_P-littoralis_Contig1106.11.1|organism=Pylaiella littoralis U1_48|type=CDS|length=561bp|location=Sequence derived from alignment at P-littoralis_Contig1106:39319..41903+ (Pylaiella littoralis U1_48)
ATGGTCGCCCACTGCGATCCCAACGTAATCCACCAACCGAACATTTCCGC
GGAAAAGCTCTCCAAAATGTGGGCGGGGGTGGCGGCGAAGTGGAATCAGT
CCCACGCAAACTGGAGTGGCACGTCTGGCAACAATCAGCCTTTGGTGAAC
TTCTGCCAAGGCGATTCCGACATTTTCCTCGTCGGTGAAGCTATAAAAAA
GTACCCCGAATTAGACCAGGCGTGCAACGCGCTATTACCAGAAGACGTCC
AGCGAGAAGACGACGGGACCGGAGCAGCAGCTGGGGAGACGGGAGGTGCG
GAACGCAGGGCGTCAGCCAAGCGCGAGGGCGAGCGGCTACACGGCATGAA
ACGTGCCGGCAAGAAGAAGGCTAAAAAGGACGAGAGGGCGCAGAGCGTGG
CCGACGCTACGGAGAAGGCGGTGAGTTCGGCCACTGCGGGGATGGCACCG
TTGCTGGCATCGATGAAGCCGGACACCGCAAACGGGCGTCCCCAAACTGA
TGACCCGGGGCGCCAGGTTGCAGAAATCGTCCTCGCCGACGAATGCATGA
CCGCCCTATGA
back to top