mRNA_P-littoralis_Contig1103.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig1103.10.1
Unique NamemRNA_P-littoralis_Contig1103.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 1.120e-43
Identity = 72/99 (72.73%), Postives = 83/99 (83.84%), Query Frame = 1
Query:    1 QPLPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKMASCVVEAF 297
            +PL DMSHA RKKAAA+HP LCG+ HA +IAAV+TQDV EKWN+TTGNK+RNQA ++GAE +NARGAGVQL RAECFT ACR L PG G+M   VVEAF
Sbjct:  133 EPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQACYNGAEAVNARGAGVQLPRAECFTRACRALLPGSGEMDPLVVEAF 231          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5K6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6T9_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.120e-34
Identity = 59/98 (60.20%), Postives = 70/98 (71.43%), Query Frame = 1
Query:    7 LPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKMASCVVEAFS 300
            +P M  A+ K AAAEHP LCG+ HA +IAAVK QDV+ +   T  NK+RNQA + G   MNARG GVQL+R ECFTH CR LWPG G+  + VVEAFS
Sbjct:    1 MPSMKAAAAKVAAAEHPGLCGVYHAHIIAAVKIQDVLARSGSTAANKYRNQACYDGEMAMNARGQGVQLKREECFTHPCRALWPGSGESDASVVEAFS 98          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 7.920e-34
Identity = 59/96 (61.46%), Postives = 72/96 (75.00%), Query Frame = 1
Query:    7 LPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKMASCVVEA 294
            +P M+ A+ KKAAAEHP LCG+ HA +IAAV+T+DV  +   T  NKFRNQA + GA  MNARG GVQL+RAECFTHA R +WPG  +M + VVEA
Sbjct:    1 MPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHAGRAVWPGNEEMEASVVEA 96          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 6.020e-32
Identity = 56/91 (61.54%), Postives = 69/91 (75.82%), Query Frame = 1
Query:    1 QPLPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKM 273
            +P+P M+ A+ KKAAAEHP LCG+ HA +IAAV+T+DV  +   T  NKFRNQA + GA  MNARG GVQL+RAECFTHA R +WPG  +M
Sbjct:   62 EPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSRSGSTAANKFRNQACYDGAMAMNARGKGVQLKRAECFTHARRAVWPGNEEM 152          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 1.670e-31
Identity = 55/95 (57.89%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 QPLPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKMASCV 285
            +P+P M+ A+ KKAAAEHP LCG+ HA +IAAV+T+DV  +   T  NKFRNQA + G   MN RG GVQL+RA+CFTHACR +WPG  +M + V
Sbjct:   64 EPMPSMALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDVTSRSGFTAANKFRNQACYDGGMAMNTRGKGVQLKRADCFTHACRAVWPGNEEMEASV 158          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 3.060e-30
Identity = 55/91 (60.44%), Postives = 68/91 (74.73%), Query Frame = 1
Query:    1 QPLPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKM 273
            +P+P M+ A+ KKAAAEHP LCG+ HA +IAAV+T+DV  +   T  NKFRNQA + GA  MNA G GVQL+RAECFTHA R +WPG  +M
Sbjct:  131 EPMPSMALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDVTSQSGSTAANKFRNQACYDGAMAMNAHGKGVQLKRAECFTHARRAVWPGNEEM 221          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.580e-19
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 QPLPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQ 159
            +PL DMSHA RKKAAA+HP LCG+ HA +IAAV+TQDV EKWN+TTGNK+RNQ
Sbjct:   64 EPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDVAEKWNQTTGNKYRNQ 116          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5KQB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 6.040e-17
Identity = 40/69 (57.97%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 QPLPDMSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQASFHGAETMNARGAGV 207
            +P+P M+ ++ K AAAEHP LCG+ HA ++AAVKTQDV  +   T GNK+RNQA   GA TMNARG G 
Sbjct:   64 EPMPSMAPSAAKVAAAEHPGLCGVYHAHILAAVKTQDVQARSGSTAGNKYRNQACCDGAITMNARGRGA 132          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5KJS7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJS7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 5.220e-16
Identity = 44/103 (42.72%), Postives = 58/103 (56.31%), Query Frame = 1
Query:    4 PLPDMSHASRKKAAAE-HPDLCGLCHADVIAAVKTQDVVEK--WNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKMASCVVEAFSL 303
            PLPD+     ++AA + H  LCG  HA+ IA +    V E+    E T  + RNQA +     +NARG GVQLRR ECFT ACR +WP    +   V+ A S+
Sbjct:   96 PLPDIGKLPERQAAVQQHAGLCGKYHAEHIANIDVTMVEERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWPDDQPLPVAVLAALSM 198          
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Match: A0A6H5K3W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3W2_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.230e-13
Identity = 41/88 (46.59%), Postives = 51/88 (57.95%), Query Frame = 1
Query:    4 PLPDMSHASRKKAAAE-HPDLCGLCHADVIAAVKTQDVVEK--WNETTGNKFRNQASFHGAETMNARGAGVQLRRAECFTHACRTLWP 258
            PLPD+S     +AAA+ H   CG  H + IA +    V E+    E T  + RNQA +     +NARG GVQLRR ECFT ACR +WP
Sbjct:  200 PLPDISKLPEMQAAAQQHAGSCGKYHGEHIANIDVTMVKERAAGAEITTKRMRNQACYDAGTALNARGRGVQLRRQECFTQACRAVWP 287          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig1103.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A6H5JH50_9PHAE1.120e-4372.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6T9_9PHAE3.120e-3460.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE7.920e-3461.46Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE6.020e-3261.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE1.670e-3157.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE3.060e-3060.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH61_9PHAE1.580e-1975.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB2_9PHAE6.040e-1757.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJS7_9PHAE5.220e-1642.72Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3W2_9PHAE2.230e-1346.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig1103contigP-littoralis_Contig1103:39713..40880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size699
Hectar predicted targeting categoryother localisation
Exons2
Cds size291
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789437.6808007-UTR-P-littoralis_Contig1103:39712..397271680789437.6808007-UTR-P-littoralis_Contig1103:39712..39727Pylaiella littoralis U1_48UTRP-littoralis_Contig1103 39713..39727 +
1680789437.7202156-UTR-P-littoralis_Contig1103:40487..408801680789437.7202156-UTR-P-littoralis_Contig1103:40487..40880Pylaiella littoralis U1_48UTRP-littoralis_Contig1103 40488..40880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789437.6920328-CDS-P-littoralis_Contig1103:39727..398711680789437.6920328-CDS-P-littoralis_Contig1103:39727..39871Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 39728..39871 +
1680789437.7101238-CDS-P-littoralis_Contig1103:40340..404871680789437.7101238-CDS-P-littoralis_Contig1103:40340..40487Pylaiella littoralis U1_48CDSP-littoralis_Contig1103 40341..40487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig1103.10.1prot_P-littoralis_Contig1103.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig1103 39728..40487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig1103.10.1

>prot_P-littoralis_Contig1103.10.1 ID=prot_P-littoralis_Contig1103.10.1|Name=mRNA_P-littoralis_Contig1103.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=97bp
MSHASRKKAAAEHPDLCGLCHADVIAAVKTQDVVEKWNETTGNKFRNQAS
FHGAETMNARGAGVQLRRAECFTHACRTLWPGKGKMASCVVEAFSL*
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mRNA from alignment at P-littoralis_Contig1103:39713..40880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig1103.10.1 ID=mRNA_P-littoralis_Contig1103.10.1|Name=mRNA_P-littoralis_Contig1103.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1168bp|location=Sequence derived from alignment at P-littoralis_Contig1103:39713..40880+ (Pylaiella littoralis U1_48)
CAGCCTCTACCCGACATGAGCCACGCCTCGAGGAAGAAGGCAGCAGCGGA ACACCCGGATCTATGCGGTCTGTGCCACGCAGACGTAATCGCCGCCGTGA AAACACAAGATGTCGTCGAGAAGTGGAACGAAACCACTGGCAATAAGTTC CGCAACCAGGTGCGACACTCGATCTATGTTTCTACTGCTGTCTACTGCTG CTGCTGCTGCATGATACAAGTATGATATTTCTTGTACGATTTGAAATATG TTCGTCAGCTAGTAGTATAATTTGATACTCCCGGTACATACAAATCGCAT CATTATTGTATCTACTGCCGCCATGTGCATGAATTTGCACTGCTGCTGTA GTTTTAGTATATATCTAAATATATATCACGTGAGCTCGCCCGTATTCATT CGCAGGCATGATTTCACTCATAATGTGGTTGCAACTTGCTGCTCACGGGG GTTGGTTGCGTTCTTTGTTGTTGCCGCAAGTCCACATGTGATGGGCTGGG CCACATATTGGAACACACCGCAGGCAGAGACGTAAAACATAACACTGACA AAAGCGGTAAACGTGGTTCCTGCTGTTTTCTTATGTTACGCGTGTGCTGT TTGTCAAAAACTCGTGTGCATACGATAGGCCTCCTTCCATGGAGCGGAAA CGATGAACGCGCGTGGGGCGGGTGTTCAGCTGCGCAGGGCAGAATGTTTC ACCCACGCTTGTCGGACGCTGTGGCCTGGCAAAGGCAAAATGGCCTCGTG TGTTGTGGAGGCGTTTTCTTTGTAGGCACCCTTGCCGGCTACATGTTTGC GGTAGCGTTTCCGCGAAATAGGCCGCAAACGTAGAGTTGAGAAGTAATGA ACGTACTGTCACACAGTTCCGCTCGCCGCACCTTTACATCGGCAAACAGC CTAGTTTGTTTCTGCCGTGGTGTTGGAGGGCTCCTACGGCAAGAACAGGT CATGATCCTGTTCGTGACATGTTTCGGGATGATTTTGTCTGGGTGAAACA TCTGTAGGCCCTTGCGATGTGCGCATAGATGTCGCGTGACATAGATTGGA GGTTTGCATCCTTTGCCGCTGCGTCTAGTACGCCTTCGAGGCGTCTGCGG GGCGTCCCAGTACAGGGCGTCCTAGTACGTATGCAATTGTGTTTGCTCAA GCAACCAAATGGTACTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig1103:39713..40880+

>mRNA_P-littoralis_Contig1103.10.1 ID=mRNA_P-littoralis_Contig1103.10.1|Name=mRNA_P-littoralis_Contig1103.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=291bp|location=Sequence derived from alignment at P-littoralis_Contig1103:39713..40880+ (Pylaiella littoralis U1_48)
ATGAGCCACGCCTCGAGGAAGAAGGCAGCAGCGGAACACCCGGATCTATG
CGGTCTGTGCCACGCAGACGTAATCGCCGCCGTGAAAACACAAGATGTCG
TCGAGAAGTGGAACGAAACCACTGGCAATAAGTTCCGCAACCAGGCCTCC
TTCCATGGAGCGGAAACGATGAACGCGCGTGGGGCGGGTGTTCAGCTGCG
CAGGGCAGAATGTTTCACCCACGCTTGTCGGACGCTGTGGCCTGGCAAAG
GCAAAATGGCCTCGTGTGTTGTGGAGGCGTTTTCTTTGTAG
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