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Homology
BLAST of mRNA_P-littoralis_Contig1103.1.1 vs. uniprot
Match: D7G2T1_ECTSI (Putative transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T1_ECTSI) HSP 1 Score: 396 bits (1018), Expect = 3.980e-131 Identity = 213/358 (59.50%), Postives = 266/358 (74.30%), Query Frame = 1
Query: 1 ARFFVGDDEEVDQDATAEKFFLVAGLSTVMFGLAFNVPFIVAPSVLYAARQSGITMGGHLASQAIANLAAALFLYFAAHLSFVSFTPRALRLGAGCGIAMLVSIIGLRSLDLLVAGSFTLQPLTWQNILGLATIVAACVRASRENIVKKFTWVVGVPAVVTVLVYAVIDRSKFQGYSSVEHPPLSNWGDGSFGVVNFSQLQEVPSLHWFYTIRTFASIIINICSIILVLIDSVCIEDVDIELKSSGESNFSDAIGGSHKFRHMVCAIPMMSCLGNLMGVTTQAAFVQSMMVVFAGGTTGLSAAVTGALLVSTTVLWPLLPVVVPAHVSGALTVVISLRFFTVIRLINVKRPSSLLMFG 1074
A VG DE VDQ +T E F LVAG ST+ FG FN+PFIVAPSVLY+A ++ SFVS P ALRLGAGCGI++LVS++G+R++ +LV SF+LQ TWQ I+G I AAC +A+ E +KK+ V+GVP V+TV +YAV+DRSKFQGYS +HPPLSNWG G+FG +NFS+L+E P +WFY RTF S+ IN+ SI+L+LID+VC+EDV ++KS+ E +FS+AIGG+ KFR M CAIP MS +GN MGVTTQAAFVQSM++VFAGG TGLSA VTGALL+ TTV+WPLLP++ PAHVSGALTVVISLRFFTVI++I+V P +LLMFG
Sbjct: 42 ASLLVGGDESVDQKSTFEAFLLVAGASTMAFGAFFNMPFIVAPSVLYSAPET----------------------------SFVSLIPTALRLGAGCGISVLVSVLGMRNIGVLVNNSFSLQAFTWQIIVGFGIITAACGKAAPEKQLKKWMHVLGVPMVITVAIYAVLDRSKFQGYSLADHPPLSNWGMGAFGTINFSELRETPRKYWFYISRTFLSVNINVSSILLILIDAVCLEDVRTKVKSTREVDFSNAIGGTKKFRSMACAIPCMSLVGNFMGVTTQAAFVQSMILVFAGGKTGLSAVVTGALLLMTTVMWPLLPLLAPAHVSGALTVVISLRFFTVIKMIDVNEPRNLLMFG 371
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 1 |
| Start | 0 |
| Seed ortholog | 1247024.JRLH01000008_gene1607 |
| Preferred name | purP |
| PFAMs | Xan_ur_permease |
| Model size | 1668 |
| Max annot lvl | 1236|Gammaproteobacteria |
| KEGG ko | ko:K06901 |
| KEGG TC | 2.A.1.40 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0003674,GO:0005215,GO:0005345,GO:0005575,GO:0005623,GO:0005886,GO:0005887,GO:0006810,GO:0006811,GO:0006812,GO:0006863,GO:0008150,GO:0008324,GO:0015075,GO:0015077,GO:0015078,GO:0015205,GO:0015207,GO:0015291,GO:0015293,GO:0015294,GO:0015295,GO:0015318,GO:0015672,GO:0015851,GO:0015853,GO:0016020,GO:0016021,GO:0022804,GO:0022857,GO:0022890,GO:0031224,GO:0031226,GO:0034220,GO:0044425,GO:0044459,GO:0044464,GO:0051179,GO:0051234,GO:0055085,GO:0071702,GO:0071705,GO:0071944,GO:0072530,GO:0098655,GO:0098660,GO:0098662,GO:1902600,GO:1904823 |
| Exons | 8 |
| Evalue | 2.52e-07 |
| EggNOG OGs | COG2252@1|root,COG2252@2|Bacteria,1MUV0@1224|Proteobacteria,1RMBE@1236|Gammaproteobacteria |
| Description | permease |
| Cds size | 1668 |
| COG category | S |
| BiGG Reaction | iECH74115_1262.ECH74115_5145,iECOK1_1307.ECOK1_4117,iECSP_1301.ECSP_4762,iECUMN_1333.ECUMN_4191,iECs_1301.ECs4651,iG2583_1286.G2583_4505,iJO1366.b3714,iUTI89_1310.UTI89_C4220,iY75_1357.Y75_RS18500,iZ_1308.Z5209 |
| BRITE | ko00000,ko02000 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1680789437.4329908-CDS-P-littoralis_Contig1103:102..260 | 1680789437.4329908-CDS-P-littoralis_Contig1103:102..260 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 103..260 + |
| 1680789437.4448364-CDS-P-littoralis_Contig1103:446..669 | 1680789437.4448364-CDS-P-littoralis_Contig1103:446..669 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 447..669 + |
| 1680789437.4530587-CDS-P-littoralis_Contig1103:1700..2027 | 1680789437.4530587-CDS-P-littoralis_Contig1103:1700..2027 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 1701..2027 + |
| 1680789437.4609218-CDS-P-littoralis_Contig1103:2253..2322 | 1680789437.4609218-CDS-P-littoralis_Contig1103:2253..2322 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 2254..2322 + |
| 1680789437.47212-CDS-P-littoralis_Contig1103:2725..2864 | 1680789437.47212-CDS-P-littoralis_Contig1103:2725..2864 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 2726..2864 + |
| 1680789437.4818923-CDS-P-littoralis_Contig1103:3014..3111 | 1680789437.4818923-CDS-P-littoralis_Contig1103:3014..3111 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 3015..3111 + |
| 1680789437.495409-CDS-P-littoralis_Contig1103:3500..3559 | 1680789437.495409-CDS-P-littoralis_Contig1103:3500..3559 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 3501..3559 + |
| 1680789437.5076451-CDS-P-littoralis_Contig1103:4307..4903 | 1680789437.5076451-CDS-P-littoralis_Contig1103:4307..4903 | Pylaiella littoralis U1_48 | CDS | P-littoralis_Contig1103 4308..4903 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig1103.1.1 >prot_P-littoralis_Contig1103.1.1 ID=prot_P-littoralis_Contig1103.1.1|Name=mRNA_P-littoralis_Contig1103.1.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=556bp
ARFFVGDDEEVDQDATAEKFFLVAGLSTVMFGLAFNVPFIVAPSVLYAAR QSGITMGGHLASQAIANLAAALFLYFAAHLSFVSFTPRALRLGAGCGIAM LVSIIGLRSLDLLVAGSFTLQPLTWQNILGLATIVAACVRASRENIVKKF TWVVGVPAVVTVLVYAVIDRSKFQGYSSVEHPPLSNWGDGSFGVVNFSQL QEVPSLHWFYTIRTFASIIINICSIILVLIDSVCIEDVDIELKSSGESNF SDAIGGSHKFRHMVCAIPMMSCLGNLMGVTTQAAFVQSMMVVFAGGTTGL SAAVTGALLVSTTVLWPLLPVVVPAHVSGALTVVISLRFFTVIRLINVKR PSSLLMFGISILLIPFSFDFVDALCIAAVLGFTRDKIDELNGVDFRQFFF RGGENKLAVPAAEDEQKVDCETGSLSSLSVLTKSMVAKKGLRPGRGRLVR RHTMMHISSAPQGPVSMERQVGADAMQPSTNGPLQMYGPHRILKGLSRRS GSLSLPRPSLNSSGLLVKPDPSLQVDDHSTSLHWALAVAATLQLVLSAVS NQAKT* back to topmRNA from alignment at P-littoralis_Contig1103:103..4903+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_P-littoralis_Contig1103.1.1 ID=mRNA_P-littoralis_Contig1103.1.1|Name=mRNA_P-littoralis_Contig1103.1.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4801bp|location=Sequence derived from alignment at P-littoralis_Contig1103:103..4903+ (Pylaiella littoralis U1_48) GCACGCTTCTTTGTTGGGGATGACGAAGAGGTGGACCAAGACGCAACGGC
AGAGAAGTTCTTTCTCGTTGCCGGACTATCGACCGTTATGTTCGGTTTGG
CCTTCAACGTGCCGTTTATTGTGGCGCCTTCGGTGCTATATGCTGCACGG
CAATCTGGGTGAGTGCGGTTTACGATGTCACGTTCACCCAAGACCAAAGG
AAAAAGCCGTAGGCTCAGCGCCTTATTGTCGACAACGCTTCACCTTTATG
GATAAATGGCACCGGTGACATGATTTCGACACCACTGTAACATCAAAACC
TAGAGAAGACGAACCCCGCTCTATTCCATATTCGCATCGCGCAGGATCAC
GATGGGGGGGCACCTTGCATCGCAAGCCATCGCCAACCTGGCAGCGGCAT
TATTTTTGTACTTCGCGGCACATCTTAGCTTCGTGTCGTTCACACCGAGG
GCACTACGGCTAGGAGCTGGGTGCGGGATAGCTATGCTTGTCAGTATCAT
TGGCCTGCGCAGCTTGGATCTTTTGGTCGCCGGCTCTTTCACACTACAGC
CCCTCACCTGGCAAAACGTGAGTGCCGCCGATGTTCTGTGATTCGGAATA
TCGAGGGTTAGCTGAGCTTTTATCTTTTGATACAACCGCAACCGAGCTCT
AAGATTTAGCCCTGAGACCCTCGGATTGTGATGTCGTGATTCCTGTCTCG
GCGACCTTTATGTTTGTCCCCGTACGTATAGTACGCGAACGCGGGTCATT
CTGAAGAAAAAGCAACGCGCAGGCATACTGCTAGCGAGGGAAATAAGAAT
GCTCTCAGCTCTCATCGCAAAGAGTGATAAGTCATGCACCGAGGTAGGCA
AATTGGTCTGAGGAAGACCTCTCCAGTTGAGTCCCCGCTCGACGAGTAGG
CCCCTTTGGTGCATAGAGAGGCCGAAGATAATGGAGTCGAGATGGTGAAC
GGGCTAGGGTACGTACAAATTTAATATACTTTACTGGAACTCCTCTATAG
CAGAATGGAAAAAATAATGCTGTGCTGTGTCAACCCGATAGGCTTTGGCA
GTGGTGTCACAACAGCGACTGATGGCGCTCACATGCAAATATAATGCGCC
AGTGAATTATGAGTCTGTCTGATGTGGCAAGTCTGATATAATGAAAACCA
ATCGCCAAGACTAAATACTTAGATAAATGGCTCAATCGCGAACTCGTGGT
CGTGTATATGACCTCGTCGCTGGGGATAATGTAGGCTGTCCTCTGACGCA
ATGCCGTGTCCTTGTAGCGTCCAGAAAACAGGCTACAGTAAGGCGCTCAC
GTAAATAGGTCAATTTGAAAACTTTGTCAAAATCGATAACTTCAGAGAGC
GAGGCAAAAGCATTAGGTCGACATATCTGTTCTAAAGCGAATACTACGCA
CCAAACTTTCCAAGAATGTTCTTCAGAGGTGGCGATGTACCCTTTTACGC
GCACTAAACGGTCCAAATGTAGAGAACAATGATCATGGTTTTCTACAGAT
AGGGATCGTAAGATATCATCCCGTGACGCCGAAGCCAACCCCTGACTGAC
GACCCCTTTGTCCTACCAAACGGCACCACTCACCGTCACGGCGCTCAGAT
ACTTGGACTGGCCACCATCGTGGCCGCGTGTGTCAGGGCCTCTCGCGAAA
ATATAGTAAAAAAGTTTACTTGGGTCGTTGGAGTCCCCGCGGTGGTCACC
GTGCTGGTGTATGCCGTGATCGACCGGTCAAAGTTTCAAGGGTACTCCTC
GGTAGAGCACCCGCCCCTGTCCAACTGGGGAGATGGGAGTTTCGGCGTTG
TAAACTTCTCCCAGCTACAGGAAGTCCCAAGCCTGCACTGGTTTTACACC
ATCAGAACATTTGCCAGCATCATCATCAACATTTGCAGCATTATCCTGGT
CTTGATCGACTCGGTCTGTATTGAGGTGAGAAATCCAAAAAAGACATGGG
GGGGCCTGGGCGTCGCAAAATGAACGTGGGATATCAAAGTGCGTAGCGCA
GTATCAGTCAGTCTGAAAATCTCAACAAGAATGACCCTCCTCAGCACTTG
CGGGGGCTTGACACACGCTACAGCAGCTGGCAGACACGATTTTCGACAAC
AAACCGACATCCCACTTCCTATACAGTATGCCTGATGTCTTTGTTTCTCA
GGATGTGGACATCGAGCTGAAATCCTCCGGAGAATCGAACTTCTCTGACG
CCATCGGAGGTTCCCACAAGGTGAACCTTTATCAGCAGTCGTGTCTGCCC
CTGCGTATGAAATGAATACGGCAGCCAAGAATTTTAAACTTACTTGAGTT
CTGAGGTACGACATAATTCAGATATGAACTTTCGTCCGAAATCAGCGTTG
GGTTAATGGAGCCGTGCGCACTCGAAAGGGATGACAAGTCATACCGACGG
CGGACACCTACGGTTTACCATCTGACGGCTGTGCAGTTTGAAGCGAAACT
CCGTTCTAAAATTGAAGCTACCGAAACGGTTTCGGCCCGCGCCGTAGACT
GGGTAGAGCAACGCAAATATGAGCGAACAGGGGGTTCCCGCCCCCCGTTC
CATCCCAATGCAAACCCCCTCTATTCCTGCACCTACGCTGTTGCGTACCA
TGTCATGTCCCTCATACCCGAAGTTTCGGCACATGGTTTGCGCCATACCG
ATGATGTCCTGCCTCGGGAACCTGATGGGTGTCACCACCCAGGCCGCGTT
CGTCCAGTCCATGATGGTCGTCTTTGCTGGTGGTACTACCGGTCTGAGCG
CTGCCGTCACAGGTGTGCGTCTCTCAATGGTGGAAGGTGGTGATCGAATT
GAAAGGGGAAAGGACGACGGAATAACCGATGTCACAAAGTCCAATAGTAG
CTACCACAATGTTTCCGACGGTCCGACCTGCTGACAATATTCGGTGCCCT
GCCGTCGTTCAGGAGCCCTGCTCGTCTCGACAACCGTTCTATGGCCACTA
CTGCCGGTGGTAGTACCGGCGCACGTGTCGGGAGCTCTGACTGTAGTCAT
CAGCTTGAGGTGCGTTTTCACTCCAACATACACTCACGACCTTCCCAAAA
ACCTCCGCAGCCGAAAATTGGCGACGTGGTAGATTCACTGAAGCGGCTAG
GGAGTGGACATGCGAGGGCTTGTGTGCTCCGCGTTCGTCGTCTGGAATGG
CCGTCAGCGCTCCCTTCGGTGTTCAACTTGCTCCTTGTTCGCCCATCCAA
TGCCATGCGCCGACTGCGCGTCTTCTCTGTTAGTTTTGCCTCCTCTCTGA
CCCAGCGCCAGTATTTCCATCCAGGTCCGCTGTTCAACTTTCTCCTTCTT
TCCCCATTCAATGTCTTTCGCCGACAGCAGTCTTCTCTGTTGATTTTACC
ACCTGTCTGACCCATTCCATCCGGTCCCGCCAACTGCTGCTTCGACAGGT
TCTTCACAGTGATAAGACTGATCAACGTCAAGCGACCAAGCAGCCTTCTC
ATGTTTGGTGAGAGCAGTCTCCACTGCTGTTGTATCGCAGGACCGGAAAA
CGCTGAAACACTGCACCGTTCGTACCACACCATCATAAATGGATGGGAAA
GCCAAATACGTGTTTGCTGTACTATTGCCGCATCCACGGAGCTTCCTCCT
TTGTCCTCTTTCCTGCGCCAAACTCTGCCAAAGTGGTTGATTTGAAGAGG
GCTGGTGGTTTTACTTTCCCCGGCTGCCCCGGCGATTTGGTGGATATCCT
CGAAACCTCCTCACGTATACAGGTCGTGAGTTCGAAAACAGTGGACTGGG
ATATAGTCTCGCGCAAAATCTACCACCGCAGGAGTGGGAATCGTTCATTT
CGCTAGAAAATACGACCATTTTGCGAGCAAACAAACTTCGATTCGAAGAA
AGGTTTGGGAATTTTTCAACACACGCATGAAGACGATCTACTCTCCGACA
TCAATTCATCACAACACTTCGTCATGCCACTTTTTGCGCAACTCAGCGTA
ACCACGCATGTATGTGGAATCTCTGACATCCTCGGTTCACAAATCAACAC
AACCGGTCATTGTTTGCTATAGTAGGCGTTTAAAGGTCGTTAACCCTCTC
TGGCTAGTTTGTACCACCACACGGCGATATTGTGGCATGATTACCCGATG
GCCATTAGAGCGTTCTTGTGACAGGCCTTCAGTAATCAATGCACATACCA
TCCGCCTTACATCAGCTGACGCGGTGTGGCGTGTTTGTCTACTGTCTGTT
CCTAGGGATTTCTATTCTGTTGATCCCGTTCTCCTTCGACTTCGTGGATG
CCCTGTGCATCGCAGCGGTACTGGGCTTCACCAGGGACAAGATCGACGAG
CTCAACGGGGTTGACTTCCGACAGTTTTTTTTTCGCGGGGGCGAAAATAA
GTTGGCCGTCCCTGCGGCCGAGGACGAGCAAAAAGTTGATTGCGAAACGG
GATCACTCTCAAGCCTATCGGTCCTGACCAAAAGCATGGTAGCCAAGAAG
GGGCTACGCCCAGGACGCGGCCGCCTCGTCAGACGTCACACAATGATGCA
CATTTCCTCCGCGCCACAAGGCCCGGTCAGCATGGAGCGGCAGGTCGGAG
CAGACGCTATGCAACCGTCCACCAATGGGCCCCTCCAAATGTACGGTCCC
CACCGCATCCTTAAGGGCCTATCTCGTAGATCGGGGAGCCTTTCTTTGCC
CAGGCCCTCCCTAAACTCATCAGGACTTCTCGTGAAGCCGGACCCTAGTC
TCCAGGTTGATGATCATTCGACTTCTTTGCACTGGGCACTTGCTGTCGCG
GCGACGTTACAGCTGGTGCTTTCGGCGGTGAGCAACCAAGCAAAAACGTG
A back to topCoding sequence (CDS) from alignment at P-littoralis_Contig1103:103..4903+ >mRNA_P-littoralis_Contig1103.1.1 ID=mRNA_P-littoralis_Contig1103.1.1|Name=mRNA_P-littoralis_Contig1103.1.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1668bp|location=Sequence derived from alignment at P-littoralis_Contig1103:103..4903+ (Pylaiella littoralis U1_48) GCACGCTTCTTTGTTGGGGATGACGAAGAGGTGGACCAAGACGCAACGGC AGAGAAGTTCTTTCTCGTTGCCGGACTATCGACCGTTATGTTCGGTTTGG CCTTCAACGTGCCGTTTATTGTGGCGCCTTCGGTGCTATATGCTGCACGG CAATCTGGGATCACGATGGGGGGGCACCTTGCATCGCAAGCCATCGCCAA CCTGGCAGCGGCATTATTTTTGTACTTCGCGGCACATCTTAGCTTCGTGT CGTTCACACCGAGGGCACTACGGCTAGGAGCTGGGTGCGGGATAGCTATG CTTGTCAGTATCATTGGCCTGCGCAGCTTGGATCTTTTGGTCGCCGGCTC TTTCACACTACAGCCCCTCACCTGGCAAAACATACTTGGACTGGCCACCA TCGTGGCCGCGTGTGTCAGGGCCTCTCGCGAAAATATAGTAAAAAAGTTT ACTTGGGTCGTTGGAGTCCCCGCGGTGGTCACCGTGCTGGTGTATGCCGT GATCGACCGGTCAAAGTTTCAAGGGTACTCCTCGGTAGAGCACCCGCCCC TGTCCAACTGGGGAGATGGGAGTTTCGGCGTTGTAAACTTCTCCCAGCTA CAGGAAGTCCCAAGCCTGCACTGGTTTTACACCATCAGAACATTTGCCAG CATCATCATCAACATTTGCAGCATTATCCTGGTCTTGATCGACTCGGTCT GTATTGAGGATGTGGACATCGAGCTGAAATCCTCCGGAGAATCGAACTTC TCTGACGCCATCGGAGGTTCCCACAAGTTTCGGCACATGGTTTGCGCCAT ACCGATGATGTCCTGCCTCGGGAACCTGATGGGTGTCACCACCCAGGCCG CGTTCGTCCAGTCCATGATGGTCGTCTTTGCTGGTGGTACTACCGGTCTG AGCGCTGCCGTCACAGGAGCCCTGCTCGTCTCGACAACCGTTCTATGGCC ACTACTGCCGGTGGTAGTACCGGCGCACGTGTCGGGAGCTCTGACTGTAG TCATCAGCTTGAGGTTCTTCACAGTGATAAGACTGATCAACGTCAAGCGA CCAAGCAGCCTTCTCATGTTTGGGATTTCTATTCTGTTGATCCCGTTCTC CTTCGACTTCGTGGATGCCCTGTGCATCGCAGCGGTACTGGGCTTCACCA GGGACAAGATCGACGAGCTCAACGGGGTTGACTTCCGACAGTTTTTTTTT CGCGGGGGCGAAAATAAGTTGGCCGTCCCTGCGGCCGAGGACGAGCAAAA AGTTGATTGCGAAACGGGATCACTCTCAAGCCTATCGGTCCTGACCAAAA GCATGGTAGCCAAGAAGGGGCTACGCCCAGGACGCGGCCGCCTCGTCAGA CGTCACACAATGATGCACATTTCCTCCGCGCCACAAGGCCCGGTCAGCAT GGAGCGGCAGGTCGGAGCAGACGCTATGCAACCGTCCACCAATGGGCCCC TCCAAATGTACGGTCCCCACCGCATCCTTAAGGGCCTATCTCGTAGATCG GGGAGCCTTTCTTTGCCCAGGCCCTCCCTAAACTCATCAGGACTTCTCGT GAAGCCGGACCCTAGTCTCCAGGTTGATGATCATTCGACTTCTTTGCACT GGGCACTTGCTGTCGCGGCGACGTTACAGCTGGTGCTTTCGGCGGTGAGC AACCAAGCAAAAACGTGA back to top
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